epdr1 (LOC106568636)


Basic Information

Item Value
gene id epdr1
gene name LOC106568636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45692358 ~ 45708512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985487.1
acacctagctactTGATCTGTCCcccttagctagctaactatagctactgaaacataTTATGTCGTTTTGCTGtgttttggggaagaacattgtttgcatccatcagCTGGCTAGCGTTTTTACGATCAGCACTGTCCAGGGAAGGgcaggtgcgcgagacaactttaccagcatcatagcatacataTCGATGAATccttgtgacatatgaaatacgagtgatactGTAATCattgtgtaataactacgtaacaATTTATcgcgttcatacattttttatgtgactgcagtcattttcaggtcctgattggtcaacaagcttatttgacacgtcaaatagtgttctTTGAATTGTATCTTTTTTGATAAGtcaagacccaaacggcgttccatactATGTATGGACTATTATTTGTTGGCTATTATTTACGTTtatatcatttatataaatacatTGTAAAGAAATAAAGATAAGTGGGCAAATATCAATTTGAAACATGtacattttaaaatgctaaatgTTCCCGTGCTTGTTAAATTCTAAGGTACGACTACATATCATGCTATTTATGTTTACAATAATTAATATAACAATGTTACCGTAAATGTATCCTTTTTATACAAACATGTTTATTATCATAGGACGGATTTGCGACTGCGTGAGCTGCTCTGAAAAAAACAAAAGGGCTTTTTATTTGAGTGTAACGGTATCAAAGACTCTGTGGTGTTATCAACCTGCTGCCACATATCAAATGAAATCAACAGTTCATGATTTTTACCTTCACTTGAATGAATTCCATATCTCCAGGATGACTCATGTTGTATCTCTTGTGTTTGCATTTTGCTTGGGAGCGGTGGTACCTGCTTTGAGCTACCCGGAGACAGCTTTCGCACCGCCGGTTCAGCCCTGTCTTGCGCCCTTGCAATGGGAGGGCAGATCCGTCGAATACAACCACAACACAGGACGAAATACACGGGCCTCGGTGTCGTATGATGCACAGAACCACAGAATAAGGCTTCTTCAACAGAATAAAAGACATACACCATGCCAGAAATACTTTGAGTTTATCTACCTGTACAACAGTGGCCTGCTGTTCCAGATCGAGCAGAAGACGAAGCAGTGTTCTAAGATCCCCTTGACCCAGGCCTGGGACCCCTTTGACATCCCTATGAACTCCACCTATGAGGACCAGTACTTTATCGGTGGACCTGGAGACATGATCGAGGTGCAGGAGTGGTCAGATAGGAAACCAGCCCGCAAAAGTAaATGAGGCGTGGGTGGGCGTCTACACAGTGAAGGACTGCTACCCTGTCCAGGAGACCTACACCAGGAACAGCAGCATCACTACCTCTACCCGCTTCTTTGACCTCCAGCTGGGCATCAGCGACCCGGAAGTCTTCACACCGCCCAGCAGCTGCCAGTCGGCCCGCCCAGAGAGGATGAACTCCGACTGCTGAGGCCTTCACCTTT
>XM_021612617.2
aatacgagtgatactGTAATCattgtgtaataactacgtaacaATTTATcgcgttcatacattttttatgtgactgcagtcattttcaggtcctgattggtcaacaagcttatttgacacgtcaaatagtgttctTTGAATTGTATCTTTTTTGATAAGtcaagacccaaacggcgttccatactATGTATGGACTATTATTTGTTGGCTATTATTTACGTTtatatcatttatataaatacatTGTAAAGAAATAAAGATAAGTGGGCAAATATCAATTTGAAACATGtacattttaaaatgctaaatgTTCCCGTGCTTGTTAAATTCTAAGGTACGACTACATATCATGCTATTTATGTTTACAATAATTAATATAACAATGTTACCGTAAATGTATCCTTTTTATACAAACATGTTTATTATCATAGGACGGATTTGCGACTGCGTGAGCTGCTCTGAAAAAAACAAAAGGGCTTTTTATTTGAGTGTAACGGTATCAAAGACTCTGTGGTGTTATCAACCTGCTGCCACATATCAAATGAAATCAACAGTTCATGATTTTTACCTTCACTTGAATGAATTCCATATCTCCAGGATGACTCATGTTGTATCTCTTGTGTTTGCATTTTGCTTGGGAGCGGTGGTACCTGCTTTGAGCTACCCGGAGACAGCTTTCGCACCGCCGGTTCAGCCCTGTCTTGCGCCCTTGCAATGGGAGGGCAGATCCGTCGAATACAACCACAACACAGGACGAAATACACGGGCCTCGGTGTCGTATGATGCACAGAACCACAGAATAAGGCTTCTTCAACAGAATAAAAGACATACACCATGCCAGAAATACTTTGAGTTTATCTACCTGTACAACAGTGGCCTGCTGTTCCAGATCGAGCAGAAGACGAAGCAGTGTTCTAAGATCCCCTTGACCCAGGCCTGGGACCCCTTTGACATCCCTATGAACTCCACCTATGAGGACCAGTACTTTATCGGTGGACCTGGAGACATGATCGAGGTGCAGGAGTGGTCAGATAGGAAACCAGCCCGCAAAAATGAGGCGTGGGTGGGCGTCTACACAGTGAAGGACTGCTACCCTGTCCAGGAGACCTACACCAGGAACAGCAGCATCACTACCTCTACCCGCTTCTTTGACCTCCAGCTGGGCATCAGCGACCCGGAAGTCTTCACACCGCCCAGCAGCTGCCAGTCGGCCCGCCCAGAGAGGATGAACTCCGACTGCTGAGGCCTTCACCTTTCCCCTTTGACCCCATGCTCGTTGACCCCATGCTCTGTTTTCACATTTCCCCCACTTTTAAccaaatttaacctttatttaattaggcaagtcagttaagaactaattcttattagTGCCGGTTTCGGTGTAGGTCCAACTGTCCCAGCATCCCGGTTAGAGGATGTAGAATGACCAGCAGGAGACAAAGAGACAAGGCACACtttattaccacacacacacacacacacacacgcacacacggcaaacaggaagaggagactATTAGTAGTGTAAGTGTTGTAGTGGTTGTCTACAAGAGAAGAGCATGTATTACATAATGGCATTACAGGCTAATGACTATGTAATAGCAATGAGGATGACACGTACTATAATGGTCAGGTATTAGCATAAGCTAATGTGGTACACAGTAGG
>XM_036985488.1
ggatccattgacttaggactcaatttgcagttcATATGccctccactagatgtcaacagtctttagaaattgtttcaggcttgtattcttgtAAATGAGTGAGTAAGACCaatctgaatgagtggaccctgacgtgtcacagagctttttcatgctcaatcccgagagagtgcatttcttgtttaccttttatattgaagatgttattgtccggttgaaatattattaatcatttagaaaacaacctgaggattgaatataaacatcgtttgacatgtttctatgaactttatggATACAATTTGGATGTTTTGTCTCCCTGTTTTGActgtgtttgagcctgtggattactgaagaaaacgcgaacaaaacagaggtttttggatataaagagactatcgaacaaaaggaacatttattgagcaaatgaatgtcttctgagtgcaaccatatgcagatcatcaaagATGAGGCGTGGGTGGGCGTCTACACAGTGAAGGACTGCTACCCTGTCCAGGAGACCTACACCAGGAACAGCAGCATCACTACCTCTACCCGCTTCTTTGACCTCCAGCTGGGCATCAGCGACCCGGAAGTCTTCACACCGCCCAGCAGCTGCCAGTCGGCCCGCCCAGAGAGGATGAACTCCGACTGCTGAGGCCTTCACCTTTCCCCTTTGACCCCATGCTCGTTGACCCCATGCTCTGTTTTCACATTTCCCCCACTTTTAAccaaatttaacctttatttaattaggcaagtcagttaagaactaattcttattagTGCCGGTTTCGGTGTAGGTCCAACTGTCCCAGCATCCCGGTTAGAGGATGTAGAATGACCAGCAGGAGACAAAGAGACAAGGCACACtttattaccacacacacacacacacacacacgcacacacggcaaacaggaagaggagactATTAGTAGTGTAAGTGTTGTAGTGGTTGTCTACAAGAGAAGAGCATGTATTACATAATGGCATTACAGGCTAATGACTATGTAATAGCAATGAGGATGACACGTACTATAATGGTCAGGTATTAGCATAAGCTAATGTGGTACACAGTAGG

Function

NR:

description
mammalian ependymin-related protein 1-like

GO:

id name namespace
GO:0007160 cell-matrix adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985487.1 False 1472 mRNA 0.43 3 45692358 45708099
XM_021612617.2 False 1669 mRNA 0.43 3 45692570 45708512
XM_036985488.1 True 1084 mRNA 0.43 2 45698637 45708512

Neighbor

gene id symbol gene type direction distance location
ranbp9 ranbp9 coding upstream 15973 45651211 ~ 45676385 (+)
rnf182 rnf182 coding upstream 78065 45611353 ~ 45614293 (+)
myo10 myo10 coding upstream 229707 45203948 ~ 45462651 (+)
LOC118965519 NA coding upstream 393961 45293797 ~ 45298397 (+)
adcy8 adcy8 coding upstream 790637 44616342 ~ 44901721 (+)
stard3nl stard3nl coding downstream 17189 45725701 ~ 45760239 (+)
LOC110529945 LOC106568641 coding downstream 256152 45964664 ~ 45975008 (+)
LOC110529944 LOC106568640 coding downstream 294569 46003081 ~ 46008988 (+)
slc39a6 slc39a6 coding downstream 556128 46264640 ~ 46293864 (+)
cldn15la LOC106568649 coding downstream 644274 46352786 ~ 46356523 (+)
G711756 NA non-coding upstream 163813 45527673 ~ 45528545 (+)
G711734 znf622 non-coding upstream 199031 45485441 ~ 45493327 (+)
G711708 NA non-coding upstream 245951 45446112 ~ 45446407 (+)
G711707 NA non-coding upstream 246459 45445682 ~ 45445899 (+)
G711880 NA non-coding downstream 13289 45721801 ~ 45722306 (+)
G711865 NA non-coding downstream 55150 45763662 ~ 45767095 (+)
G711901 NA non-coding downstream 67558 45776070 ~ 45776367 (+)
G711906 NA non-coding downstream 75234 45783746 ~ 45784333 (+)
G711907 NA non-coding downstream 76350 45784862 ~ 45785204 (+)
G711845 NA other upstream 44981 45646857 ~ 45647377 (+)
G711021 NA other upstream 1243385 44448584 ~ 44448973 (+)
G709490 NA other upstream 2494716 43196560 ~ 43197642 (+)
G708448 NA other upstream 4308175 41380025 ~ 41384183 (+)
LOC110529918 LOC106571794 other upstream 4410877 41160943 ~ 41283719 (+)
G711912 NA other downstream 84757 45793269 ~ 45794549 (+)
G713405 NA other downstream 756886 46465398 ~ 46466227 (+)
G713574 NA other downstream 1007403 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2829231 48537743 ~ 48544164 (+)
G716133 NA other downstream 3051831 48760343 ~ 48760740 (+)

Expression


Co-expression Network