XLOC_025792 (prkcab)


Basic Information

Item Value
gene id XLOC_025792
gene name prkcab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56163276 ~ 56342119 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050667
agacTAATGtaacccctgctgaaaaatccagcttaaaccagcctaggatggttggctggttttagctggtcgaccagcctggttttagaggggttttggccacttccagcctggttttagctggacaggctgggagatgaccagctaaaaccagcttgaccagcctaaaacctagccaaaaccagctatgtccagcttaaaccaggatggtcaagctggttttagatggttttagcgggtcactttccagcctgaccagctaagaccaggatggaaatggctgaaaaccagcctggaagtggccaaaacccctctaaaaccaggctggttggcCAACCATCCTAAGccggtttaagctggattttttcagcagggacactAAAATATAAgtggcatttttttaaaatgaaaggaATCTTCAATGACAAACTGATCTTTGGTTTGATGTATggcttttctatttatttatgaaacAGTTTTCTCTAATTTCCTTTTCTTCTCACCCGCAGTGTGCTGTTTTGTGGTCCACAAAAGGTGCCATGAGTTTGTGTCCTTCTCCTGTCCAGGGGCCGATAAGGGCCCAGACACAGATGATCCCAGAAGCAAGCACAAGTTTAAGATCCACAGCTATGGCAGTCCCACATTCTGCGACCACTGCGGATCGCTGCTGTACGGCCTCATCCACCAGGGCATGAAATGCGACACCTGTGACATGAACGTTCATAAGCAGTGTGTGATGAATGTGCCAAGTCTGTGCGGGACAGACCACACTGAGCGCAGAGGACGAATCTTCATGAAGATCGAGGTCAGCGGAGACAGACTTCATGTCACAGTGGGTGAGGCTAGAAATCTGATTCCCATGGACCCCAATGGCCTTTCAGATCCGTATGTGAAGCTCAAACTCATCCCAGACCCCAAGAACGAGACCAAACAGAAGACCCGCACCATCCGCTCCTCGCTCAACCCCACCTGGAACGAGTCCTTCATCTTTAAGTTAAAGGCGTCAGATAAGGAGCGGCGTCTGTCAGTGGAGGTGTGGGATTGGGACAGAACCACCCGAAATGACTTCATGGGCTCCATGTCCTTCGGTGTGTCTGAGCTGATCAAAGCTCCTGTGTCTGGGTGGTATAAGATGCTGAACCAGGAGGAGGGTGAGTACTACAACGTACCCATCCCCGAGGAGAATGACATTAACTTGGAGCTGCGGCAGAAGTTTGAGAAagccaagctcggtcctggaaaGAAAGTCATCACCCCCACTGATCACCGACGCTTCAGTTTACCGTCCGGAAACATGGACAAAGTTCGACTCAATGACTTCCATTTCCTGGCTCTTCTTGGCAAAGGGAGTTTTGGGAAGGTGATGTTGGCAGAGATGAAGTCCACAGAGGAGTTATACGCTATTAAAATCCTGAAAAAGGATGTGGTGATCCAGGATGATGACGTGGAGTGCACAATGGTGGAGAAGAGAGTTCTGGCCCAAAGAGAAAAGCCACCTTTCCTCACACAACTACACTCTTGCTTCCAGACAGTGGATCGTCTGTACTTTGTAATGGAGTACATTAACGGCGGAGACCTGATGTATCACATCCAGCAAGTGGGCAAGTTTAAGGAGCCACAAGCTGTATTCTATGCGGCAGAGATTGCAGTCGGACTCTTCTTTCTTCATAGGAAGGGAATTATTTACAGAGATCTGAAGCTGGACAACGTGATGCTGGACTCCGAGGGCCACATCAAGATCGCAGACTTCGGCATGTGTAAGGAGAACATGTATGAGGGAATGACCACTCGGACCTTCTGCGGGACGCCGGATTACATCGCCCCAGAGATTATCGCCTATCAGCCGTATGGGAAATCAGTGGACTGGTGGGCTTACGGTGTGCTCCTGTACGAGATGCTGGCGGGGCAGccTCCATTTGATGGAGAGGACGAGGACGAGCTCTTTCAGTCCATCATGGAGCACAATGTGTCCTACCCCAAATCCCTGACTAAAGAAGCTGTGTCCATCTGTAAAGGGCTGATGACCAAGCATCCATCTAAACGTCTGGGTTGTGGAGCGGAGGGCGAGAGAGATATAAAGGAGCAAGCTTTCTTCCGCAGGATTGACTGGGACCGACTGGCCAACAGAGAGATTCAACCTCCTTTCAAACCCAAAGTGTGCGGCAAGGCAGCGGAGAACTTTGACAAATTCTTCACACGCACGCAGCCCATGCTGACCCCACCTGACCAACTGGTCATCGCCAACATCGACCAGAGCGAGTTTGCTGGATTCTCCTTCATAAACCCCGAGTTCATCCACCCAGCGTCTATTCACAGTGTGGTATGA
>TCONS_00050666
agacTAATGtaacccctgctgaaaaatccagcttaaaccagcctaggatggttggctggttttagctggtcgaccagcctggttttagaggggttttggccacttccagcctggttttagctggacaggctgggagatgaccagctaaaaccagcttgaccagcctaaaacctagccaaaaccagctatgtccagcttaaaccaggatggtcaagctggttttagatggttttagcgggtcactttccagcctgaccagctaagaccaggatggaaatggctgaaaaccagcctggaagtggccaaaacccctctaaaaccaggctggttggcCAACCATCCTAAGccggtttaagctggattttttcagcagggacactAAAATATAAgtggcatttttttaaaatgaaaggaATCTTCAATGACAAACTGATCTTTGGTTTGATGTATggcttttctatttatttatgaaacAGTTTTCTCTAATTTCCTTTTCTTCTCACCCGCAGTGTGCTGTTTTGTGGTCCACAAAAGGTGCCATGAGTTTGTGTCCTTCTCCTGTCCAGGGGCCGATAAGGGCCCAGACACAGATGATCCCAGAAGCAAGCACAAGTTTAAGATCCACAGCTATGGCAGTCCCACATTCTGCGACCACTGCGGATCGCTGCTGTACGGCCTCATCCACCAGGGCATGAAATGCGACACCTGTGACATGAACGTTCATAAGCAGTGTGTGATGAATGTGCCAAGTCTGTGCGGGACAGACCACACTGAGCGCAGAGGACGAATCTTCATGAAGATCGAGGTCAGCGGAGACAGACTTCATGTCACAGTGGGTGAGGCTAGAAATCTGATTCCCATGGACCCCAATGGCCTTTCAGATCCGTATGTGAAGCTCAAACTCATCCCAGACCCCAAGAACGAGACCAAACAGAAGACCCGCACCATCCGCTCCTCGCTCAACCCCACCTGGAACGAGTCCTTCATCTTTAAGTTAAAGGCGTCAGATAAGGAGCGGCGTCTGTCAGTGGAGGTGTGGGATTGGGACAGAACCACCCGAAATGACTTCATGGGCTCCATGTCCTTCGGTGTGTCTGAGCTGATCAAAGCTCCTGTGTCTGGGTGGTATAAGATGCTGAACCAGGAGGAGGGTGAGTACTACAACGTACCCATCCCCGAGGAGAATGACATTAACTTGGAGCTGCGGCAGAAGTTTGAGGCCTGTCAGTTCAATATCCACCTGCTGAAGAAagccaagctcggtcctggaaaGAAAGTCATCACCCCCACTGATCACCGACGCTTCAGTTTACCGTCCGGAAACATGGACAAAGTTCGACTCAATGACTTCCATTTCCTGGCTCTTCTTGGCAAAGGGAGTTTTGGGAAGGTGATGTTGGCAGAGATGAAGTCCACAGAGGAGTTATACGCTATTAAAATCCTGAAAAAGGATGTGGTGATCCAGGATGATGACGTGGAGTGCACAATGGTGGAGAAGAGAGTTCTGGCCCAAAGAGAAAAGCCACCTTTCCTCACACAACTACACTCTTGCTTCCAGACAGTGGATCGTCTGTACTTTGTAATGGAGTACATTAACGGCGGAGACCTGATGTATCACATCCAGCAAGTGGGCAAGTTTAAGGAGCCACAAGCTGTATTCTATGCGGCAGAGATTGCAGTCGGACTCTTCTTTCTTCATAGGAAGGGAATTATTTACAGAGATCTGAAGCTGGACAACGTGATGCTGGACTCCGAGGGCCACATCAAGATCGCAGACTTCGGCATGTGTAAGGAGAACATGTATGAGGGAATGACCACTCGGACCTTCTGCGGGACGCCGGATTACATCGCCCCAGAGATTATCGCCTATCAGCCGTATGGGAAATCAGTGGACTGGTGGGCTTACGGTGTGCTCCTGTACGAGATGCTGGCGGGGCAGccTCCATTTGATGGAGAGGACGAGGACGAGCTCTTTCAGTCCATCATGGAGCACAATGTGTCCTACCCCAAATCCCTGACTAAAGAAGCTGTGTCCATCTGTAAAGGGCTGATGACCAAGCATCCATCTAAACGTCTGGGTTGTGGAGCGGAGGGCGAGAGAGATATAAAGGAGCAAGCTTTCTTCCGCAGGATTGACTGGGACCGACTGGCCAACAGAGAGATTCAACCTCCTTTCAAACCCAAAGTGTGCGGCAAGGCAGCGGAGAACTTTGACAAATTCTTCACACGCACGCAGCCCATGCTGACCCCACCTGACCAACTGGTCATCGCCAACATCGACCAGAGCGAGTTTGCTGGATTCTCCTTCATAAACCCCGAGTTCATCCACCCAGCGTCTATTCACAGTGTGGTATGA
>TCONS_00050668
tCATCAGTGGGTGAGGCTAGAAATCTGATTCCCATGGACCCCAATGGCCTTTCAGATCCGTATGTGAAGCTCAAACTCATCCCAGACCCCAAGAACGAGACCAAACAGAAGACCCGCACCATCCGCTCCTCGCTCAACCCCACCTGGAACGAGTCCTTCATCTTTAAGTTAAAGGCGTCAGATAAGGAGCGGCGTCTGTCAGTGGAGGTGTGGGATTGGGACAGAACCACCCGAAATGACTTCATGGGCTCCATGTCCTTCGGTGTGTCTGAGCTGATCAAAGCTCCTGTGTCTGGGTGGTATAAGATGCTGAACCAGGAGGAGGGTGAGTACTACAACGTACCCATCCC

Function

symbol description
prkcab Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and membrane. Is expressed in brain and retinal inner nuclear layer.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099841

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050667 False 2326 mRNA 0.50 15 56163276 56342119
TCONS_00050666 False 2356 mRNA 0.50 16 56163276 56342119
TCONS_00050668 True 350 mRNA 0.53 3 56276346 56284122

Neighbor

gene id symbol gene type direction distance location
XLOC_025791 FP326652.1 coding upstream 55367 56099256 ~ 56107909 (+)
XLOC_025790 NA coding upstream 509012 55646873 ~ 55654264 (+)
XLOC_025789 NA coding upstream 675035 55482120 ~ 55488241 (+)
XLOC_025788 NA coding upstream 775619 55386215 ~ 55387657 (+)
XLOC_025787 CT583658.1 coding upstream 864118 55299043 ~ 55299158 (+)
XLOC_025793 NA coding downstream 16563 56358682 ~ 56360650 (+)
XLOC_025794 cacng5b coding downstream 24276 56366395 ~ 56394018 (+)
XLOC_025795 rac1b coding downstream 232504 56574623 ~ 56594285 (+)
XLOC_025796 CU019632.1 coding downstream 277076 56619195 ~ 56622872 (+)
XLOC_025797 CR759836.1 coding downstream 303591 56645710 ~ 56685946 (+)
XLOC_025429 BX649540.1 misc upstream 25914240 30248739 ~ 30249036 (+)
XLOC_025799 NA non-coding downstream 479580 56821699 ~ 56822203 (+)
XLOC_025802 NA non-coding downstream 607836 56949955 ~ 56957558 (+)
XLOC_025806 NA non-coding downstream 1084041 57426160 ~ 57480996 (+)

Expression


Co-expression Network