Gene
RNA
| Item | Value |
|---|---|
| gene id | amph |
| gene name | amph |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 45793248 ~ 45924730 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| amph | Predicted to enable phospholipid binding activity. Predicted to be involved in synaptic vesicle endocytosis. Located in cytoplasm. Is expressed in several structures, including fin; gonad; heart; nervous system; and neural tube. Orthologous to human AMPH (amphiphysin). |
| description |
|---|
| amphiphysin isoform X6 |
| id | description |
|---|---|
| K12562 | AMPH; amphiphysin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612624.2 | False | 3541 | mRNA | 0.50 | 22 | 45793248 | 45924729 |
| XM_021612626.2 | False | 3307 | mRNA | 0.48 | 23 | 45793248 | 45924729 |
| XM_021612621.2 | False | 3650 | mRNA | 0.50 | 24 | 45793248 | 45924730 |
| XM_021612622.2 | False | 3617 | mRNA | 0.50 | 23 | 45793248 | 45924730 |
| XM_021612623.2 | False | 3596 | mRNA | 0.50 | 23 | 45793248 | 45924730 |
| XM_021612625.2 | False | 3539 | mRNA | 0.50 | 24 | 45793248 | 45924730 |
| XM_036985490.1 | False | 3596 | mRNA | 0.50 | 23 | 45793248 | 45924730 |
| XM_036985491.1 | False | 3419 | mRNA | 0.49 | 23 | 45793248 | 45924730 |
| XM_036985492.1 | False | 3365 | mRNA | 0.49 | 22 | 45793248 | 45924730 |
| XM_036985494.1 | False | 3311 | mRNA | 0.49 | 21 | 45793248 | 45924730 |
| XM_036985495.1 | False | 3278 | mRNA | 0.49 | 20 | 45793248 | 45924730 |
| XM_036985496.1 | False | 3254 | mRNA | 0.49 | 20 | 45793248 | 45924730 |
| XM_036985497.1 | True | 3221 | mRNA | 0.49 | 19 | 45793248 | 45924730 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nol7 | nol7 | coding | downstream | 108256 | 45678859 ~ 45684992 (-) |
| retreg1 | fam134b | coding | downstream | 191684 | 45509081 ~ 45601564 (-) |
| znf622 | znf622 | coding | downstream | 298147 | 45485018 ~ 45495101 (-) |
| basp1 | NA | coding | downstream | 619507 | 45122083 ~ 45173741 (-) |
| LOC110529115 | NA | coding | downstream | 808980 | 44980969 ~ 44984268 (-) |
| tmem71 | tmem71 | coding | upstream | 81681 | 46006411 ~ 46033000 (-) |
| ift57 | ift57 | coding | upstream | 137013 | 46061743 ~ 46074046 (-) |
| cavin4a | LOC106568643 | coding | upstream | 198014 | 46122744 ~ 46133988 (-) |
| tmeff1a | tmeff1 | coding | upstream | 238923 | 46163653 ~ 46241437 (-) |
| crfb16 | LOC106568648 | coding | upstream | 385002 | 46309732 ~ 46325685 (-) |
| G713011 | NA | non-coding | downstream | 8184 | 45784786 ~ 45785064 (-) |
| G713002 | NA | non-coding | downstream | 20869 | 45772129 ~ 45772379 (-) |
| G712998 | NA | non-coding | downstream | 26160 | 45763667 ~ 45767088 (-) |
| G712973 | NA | non-coding | downstream | 74749 | 45718282 ~ 45718499 (-) |
| G712972 | NA | non-coding | downstream | 75372 | 45717665 ~ 45717876 (-) |
| G713114 | NA | non-coding | upstream | 30141 | 45954871 ~ 45955074 (-) |
| G713141 | NA | non-coding | upstream | 66213 | 45990943 ~ 45991219 (-) |
| G713142 | NA | non-coding | upstream | 67085 | 45991815 ~ 45992105 (-) |
| G713150 | NA | non-coding | upstream | 77429 | 46002159 ~ 46002461 (-) |
| G713164 | NA | non-coding | upstream | 112516 | 46037246 ~ 46037460 (-) |
| G712814 | NA | other | downstream | 335000 | 45457777 ~ 45458248 (-) |
| G711133 | NA | other | downstream | 1253744 | 44538793 ~ 44539504 (-) |
| G709454 | NA | other | downstream | 2622166 | 43170760 ~ 43171082 (-) |
| G709272 | NA | other | downstream | 3072549 | 42719771 ~ 42720699 (-) |
| slc22a16 | LOC106571810 | other | downstream | 5833635 | 39956961 ~ 40017167 (-) |
| LOC110529973 | LOC106568664 | other | upstream | 1126737 | 47051073 ~ 47067973 (-) |
| G714425 | LOC106568665 | other | upstream | 1253694 | 47178424 ~ 47178736 (-) |
| G715865 | NA | other | upstream | 2364212 | 48288942 ~ 48289581 (-) |
| dlg1l | LOC106568684 | other | upstream | 2617561 | 48356004 ~ 48616588 (-) |
