LOC110529945 (LOC106568641)


Basic Information

Item Value
gene id LOC110529945
gene name LOC106568641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45964664 ~ 45975008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612630.2
TATTGTTTGTAGCTTAGCCAGCTAGCAAGCTATTCTCCCGATGGACGAACTCTTCACACATCGGTATTTCCAAATCCTTAGTACCACCCAAATATTATGATATATTTTCAAGTATCAATAAACGATTAACTGTAACTACAGACTAGCCCTGAAAATGAGCAGAATACCCGGACCCATGTGGAATTCCAAGGCTTTACACGAGCAGTTAGCGTCCATCATGGGGGCGTTGACCAATGCAGCGGTGGCGGACATATGTGAAGTCGTGGATGAAGGTTATGCGATTTTGCAATTAGAAATATCAAGAAGCTACAAGGAAAACGAGGACCTCAAGAAGAAACTGCATTTGATTGAGTCTATAATTGCGCGAGGAATCGATGGAAAAGCTGGAACTCAAGCTGTTGTTACTGAACCCGTCCTATTAGGTGAAGGTCTTCATCCAAAACTGTCGCAGCAGGAGGACACATGTCATAAAAGTAATGGGATAACAATAACGTCTGGAGATTGCTACtttgtagaagaagaagaagaggagTTACCCGATGTGGTACTTATCAAAGATGAGGACTCCGAGGACAGTGACACACATGAGGAAGGTGTTAATGTGTCATCTGTGGGAGGAGATAGTGTGGCTCCCCATACATCCCCCAATGCAAGAAAGGAAGGGAACAGTCCAGCACAGTTCAGGAGCAGGAAGATTGACTGGCAAAGGAATGAAGATAACAGTATCTTCCAGGGTGAGCAAAGGAAAGAGACATTGAAGCACAATCTCAAACGCCCTGCATCTAGATTAAGTATTGGGAAACGGGTGATCTTGGGCCCTCAATACACACTGCATGAAACCCCCAATCAACCTGGTTCCTCTGGCCACTTAGGGGGCAATGGGATGGAGACAGCAGAGCTGGTTTGCTCCTATGCCTCAAAAACAGAATCTGATGTGCTTGTGGTCCACCCAGAGCCTCCGCTTGTTCCCACTGTATCAGCTGTCACCTTTAACAGTCAAGTAGGGACTCACAGCGATAGGAGGGATATCGACATGATTGACTCTCAGCCTATTGAATTAGAGATGGACATGTGCTCTACGTGGAACAAACAGGCTAAGCCAGAGATTACTTTCTCTCAGCTCCAACAAAACCTCGAAAATATCTCAGGCATGAGTCCCGatcactgtcaactgacacaggGAATGAACACAGCATCGAATTTTGATGGACCCGACATGATGAGTTTTGCCATGTATGAGAAACAGTCTAACCATCCCCAATGGAGCGAGGTCCAAGGGAGCGCTGACAGCAGGGAGAAGCGTTTTGTCTGCCCTTTCTGTCACAAGTGTCTGATGACTTCTCAGAACCTCGAGGTGCACATGCGGATTCACACAGGAGAAAGACCATTCAGTTGTGCCCAGTGCGGGAAAAGGTTCACCCAGTCAGCCCATCTGAAAACTCACCAGAGTGTACACACAGGAGAACGGCCATTTGCGTGTACACTTTGTGGGAAAAGTTTCATAGTGAAATACAGTCTCACGTTACACCTGAAGAAACACCACTCCAATGTGAGGCCTTTGTAAAGTTAAAACAAAAGTGACATGCATTAGAGTGCACTTCTAACCATTTACTGTTCAAAAGCATACAAATCAATGGGAAACTGAATGAAATTGATTGGATCACAATGACATGTTTTATCTATTTAGGTATTAGAATATTGAATTTTGTATTATGTATTTGGGTACATCTTGCCATTCTAAATAAACTAATATGGCAGCATAATGACAAAATAATTTGTACCATTATGATTACACTGTGTACTAAGAACAATCGAAGACAATAGCGAATCAGTATATCAAATAATTGTTTTCTAAAACACCCTGTTAAAATCAACAATGGTAAATCAATGCGTTAATTTGTAGACAAGAGATACATTGAAGCCTTTAATCAGCTGTCAATGCATGGGAATGTTACCTGGGGAGTGTAAATGCTTGTTTTCACTTTAGTGTCGTTTtcaatttatttgcatatttagCCACATCAATTTTAGGTTTAATGTTTAGACTTTGAAAACATGTAAGAAAAGATGACCATTTCATGTTCCAttatgatattgttatgtgtaggTCAATCCACAGAATTAAATAGAACAGTATTACATTGTATCTCTTGACAACAATTGTGTTTAGATGTTGTTTGGATCCAAGGTTTTGTTGAAATAAATGGCGATAAT

Function

NR:

description
zinc finger and SCAN domain-containing protein 23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612630.2 True 2214 mRNA 0.42 3 45964664 45975008

Neighbor

gene id symbol gene type direction distance location
stard3nl stard3nl coding upstream 204425 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 256152 45692358 ~ 45708512 (+)
ranbp9 ranbp9 coding upstream 288279 45651211 ~ 45676385 (+)
rnf182 rnf182 coding upstream 350371 45611353 ~ 45614293 (+)
myo10 myo10 coding upstream 502013 45203948 ~ 45462651 (+)
LOC110529944 LOC106568640 coding downstream 28073 46003081 ~ 46008988 (+)
slc39a6 slc39a6 coding downstream 289632 46264640 ~ 46293864 (+)
cldn15la LOC106568649 coding downstream 377778 46352786 ~ 46356523 (+)
saga LOC106568650 coding downstream 387637 46362645 ~ 46376820 (+)
LOC110529955 NA coding downstream 403431 46378439 ~ 46384254 (+)
G712010 NA non-coding upstream 9245 45955047 ~ 45955419 (+)
G711908 NA non-coding upstream 177543 45786910 ~ 45787121 (+)
G711907 NA non-coding upstream 179460 45784862 ~ 45785204 (+)
G711906 NA non-coding upstream 180331 45783746 ~ 45784333 (+)
G711901 NA non-coding upstream 188297 45776070 ~ 45776367 (+)
G712031 NA non-coding downstream 4516 45979524 ~ 45979872 (+)
G712036 NA non-coding downstream 11825 45986833 ~ 45987060 (+)
G712039 NA non-coding downstream 15255 45990263 ~ 45990529 (+)
G712048 NA non-coding downstream 18116 45993124 ~ 45993335 (+)
G712049 NA non-coding downstream 21949 45996957 ~ 45997167 (+)
G711912 NA other upstream 170115 45793269 ~ 45794549 (+)
G711845 NA other upstream 317287 45646857 ~ 45647377 (+)
G711021 NA other upstream 1515691 44448584 ~ 44448973 (+)
G709490 NA other upstream 2767022 43196560 ~ 43197642 (+)
G708448 NA other upstream 4580481 41380025 ~ 41384183 (+)
G713405 NA other downstream 490390 46465398 ~ 46466227 (+)
G713574 NA other downstream 740907 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2562735 48537743 ~ 48544164 (+)
G716133 NA other downstream 2785335 48760343 ~ 48760740 (+)
G716862 NA other downstream 3357833 49332841 ~ 49333772 (+)

Expression


Co-expression Network