LOC110529944 (LOC106568640)


Basic Information

Item Value
gene id LOC110529944
gene name LOC106568640
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46003081 ~ 46008988 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612628.2
ggacTGGGTGAAATTACCACGCAGGCGCAGTGTGAGAGGTATTCAAAAATACTTCCTGGTCAACAAAGGCACTCTGTTGACATTTTATTGATGCTAAACTACATTTGATTTCGAGGCGTCGGCATCTATGCTTTTCTACAGCCTATTTCTTCTACACTTCCTATTAACAATCCTGAAAGCATTTTCTCTAGTAATGGCAAATTCATTTGCTTTTCACACTCAGCtagcctccatcatggaggtTTTGGCTAATGCGGCCGTGGCTGAAATCTGCGAGCTTGTTGACAATGGCTATGCCGTCCTGCATGTGGAGATATCTCGAGGCCAGAAGGAGAATGAAACATTGAGGAGAAAACTACGGCTGATGGAGATGAAAGTGTCTAGTGCGAGTACTccgagagagggaatgggaagctcCATCCTTCCGCACAGTCGCTCTCGAGCTCACCTTGGCATGGAATCGAAAAGGACATCAAACAGCGAGGTACGATGTCGGGGAGCAATTGATTCCAAGTTGGTAACCAGCATGTTTAGGCACAGAGAGTCCTCAGGTGACACTGGACAAACGACAACACCGAGAAAGACTGCAGGGTTGGAAGAGATAAACCCCAAATCACCTACCATCAAAGAGGAGATGTGGGAAGAATCCTGGGAGAATCATGACCAATGGGGGAGACTGAGTAGTGGAGCTTTAAATCACAGTGCTGATGGAGGAGAAAGGCAATCCAACGTCGACACAGAGGCTGCTCAACCAATCAGCAAACAGGAGAATGCCAGCTCTTGTTTATGGGTGAGTGGTGAAACGGACAACAACCTCCTGCCAGGATCAAATAACCTGAGTGTGAACAAAAGATCTCTAAACCCAGGACTGGAAAATGGTGATGGAATACTTAAAAGTGTGGGCTTTGATTGTATGATGTTTGAGCCCCACAGACAACTTGGGACCCTTCGCACACAGGGTTCTGGGGCTGATCTTCCCGAGTGCTCTTACTCTCATGTGGATGTTGTACCTACTCAATCGGAGTCAGAGAATGGATTCCCCTATGAAATGAGCAAAGTGATTCCCTCCATAACTGAGCACAAAAAACATGTCGCTTACCAGGACGGGAGACAGAGGGCGCCGTTGCCCTCAGAGCCTCACAGGACTGTAGGAAAAGGCATGGAAACAGGATCCAATGGTTTGGTCTCCCATGACAGTCATAACAATGATGGGAGTAACAATGGTGACGTCTCAGCAGGTAAGCTGTTAATTTGTAGTTTCTGCGGTAAGACTTTGGCTTGTCTGAAGAATCTCAAGACACACCTGAGGGTTCATACTGGTGAGAAGCCGTTCAGCTGCGCGCAGTGCGGGAAGCGCTTCTCTGACTCCAGCAACCTCAAGCGACACCAGAGCGTTCACACGGGGGAGAGACGCTACGGCTGCAGCCACTGCGGCAAGCGCTTCGCACAGTCGGGCTCACTCAAAGTGCACATGAGCGTACACACGGGATGTAAGCAGTTCAGATGTATGCACTGTGGGAAGACTTTCATATCGGCCAATCACCTCAATAGACACATCAGTGTTCATGATGGATAAATACTTTTACCAACAACTTTTCAATGGGTGAAAGCATACCTAAACGTGCTTCAGCCAAGCTTGAACAGAAAAGGGACTCggaggttggcatttattgggatgactcaTGTACAGCTCTGCAGGGTAGTCAGCCACAGTCATAAAATCAGCTTTTTAAACCAAACACTaaacttaaattaagaccaaaaagctaaaacaaaaaaaattgtaCAATATACGGTGCTTTTGGAAAGtcttcagacccctggactttttccacattgttacattagccttattctaaattcaATTAAATTGCCCCCactccctcaatctacacacactacccaataatgacaaagcataaacaggtttagacatttttgcaagatgtagaaacatcaaggGTGATCAGTGGAGACatggtgcacctgagctcaattttgaatctcatagcaaagggtctgaataattatgtaaataagctaattcttatttgctaaaatttctaaaaacctgttcacctttgtcattatggggtattgtgtatagattgagggacaattttaatttaatccattttagaataaggctgtgacttaacaaaatgtgaaaaaaggaaggggtctgaatactttccgaatgcactgtgtatagcCAATTATGATTTTGCAGCTGGCCCGTCTAGTGGAAATCGCTCAACTGTGCCTCCAGGACAACAGTCATcccaataaatgtcaacctgcaaAGGAATCGGGTGCTTGACTGACGGACTTTATAGTCCAAAAATGATTCCGTACACTTTTCAATGTGTTTTTGTAACTATCGTTGTTGTTAGTCACTCATCATCTGACATGACAGTGCCTCATTTGAGGAAAATAGTGATAGTATGTAGACGTGTAAGTGGTATTGTCAAACAAATAACTTTCATGGTGCAAATTTTGTAATAGTGTATTAACCagacagtttttatttatttttttacaataatACGAGCATGGTGTAGTCATGATTTAATAGGGTTCCTAAAAGAGCCAGTCAAATTGAATGGATGGATGTTGCACAGGCTCACTGCTACATGAAGGCCTCTTACAGTCAATGAAATATTTACTGCCCTATCAATCTAAGTCTCTACTCCTCAGCTGGTGCAGAAAGTGTTCAGTGGTTTGAACACTGACGAGTCATTCATGATACATTTCACGGTCACGTTATAGACTCGCATTAGAAACAGAATATTTCCAGAGATCCTGAAAATGCACTGAAAATATTGAATCTTAAAAATAAGGTCACATACTTGGACAACTATAAAAAATGACATTTAATAAAAGTTGTATAAGCCAATTGAGTTGAACTATTTTACAAATCTGTTAGAAAAGATTAACATTTCAGTGCAATATAGCTCATTAACTATTAAAGAATATaaaaacagtacagacagacaatgaTTACATTTTCAGATACATCCAATGTGAGTGCAAAAGATAAACATGCATACAAGAACCACACATTTTGCAAATGTGGAAACTAGTTGAGTATCAAAGCAATACAAATTATGATTATATAAAAAAAGTAACATTTCAAACTGGTTTATGTAAAGGTACACAATAGGAAATTACTTAAATCTCAAGGTCTTGTAAAGTACATTCAGTATATGCCAATAAATCATGAATATTACAAAGAAATAACAGCCATGTTGTCTtcatatactgtagtatgtacaTTAGCCTTTGTTTACAATAAACTAGCAATAAAATGGTGTCTACCGGcaacttttttttatatattaatTTTGGCTTATTGATGAAGTATTGGTGATTTAACACTTTCTGGTCAGAGAATTGTCTCATTTGGAGTAATCATTCAGATTTGGCACTTGGAGTGAATACATACAGCAATACTTCTCAAGTCACTTTCGTCTGGACAAACAGTACATATATGGAGACAATTAAATACAACTTTTCTAAAGGACCAACAACATCCAATGTATTACAAAGAATGGCCAGTTGAGATGTACAGTACAAAATGAACTCATTATTAAAGTACAAATCACCTATTTTTAGATTCTCAAAAAATCCTGCTGTAGTTTGAGGTCCAAACATGACTCATATTTCAACTTTATAAAGCTATACAATATGAACTTTATTCAGCTACTTGCTGTGCCCTGTTCCTTTTCCTGACAGAAAACACACTTTCCCTCTGGGTTGATAAACAACCATAATTACTCAGCTTTCAATGCCATTACATACTCAACATTGTACCATTTAATGAGTCAAATAAAGGGGGGGGCGATTGTGTTATTCTTTGCCGCCGTCATTATGCTCAATCTCAACATTCACATTCCATTATTGTGATCCACTGATAAGTGGTTGTGGTTAACCACAAGAGACAGCTAGTGGTATGAGTATTATGAAAATGACCACCTCTTCCCCATATCCCTTGAATACAAACATTTCTATACACGTTTCAGCACTACCATGAGCAGATAGGCATCCTCACACAGGGCTGACTTTTCTTTTCCGGCAGCATTTTCTGTCACTTCCCTGTATTTGAACTGTTATCTGATTCCGCAGTCTACTGCCTACTGACATGTAGCCCTGTTTAGTTTAGCAGGCACAGCATGCTATTAGCTAAGCCAGGCTAAAGAAGGCACTTAGCATGTTGTATTTCCATTTGCTTCTATTCAGATTAAAAGTTGCAGCTGTCATTTTTGTGAGGAAAAAACAGGTCTCAGACTGCAAGCCACTGCTACTTTAATGGCCCTGCAATTGTATTCAAAATACTGGAAGCTAGAAAATAAGTAACACTGGACAGCCCTAAAAAACCCAAGATCAACTATCAACAATCAACAACAATATCAATTCAGGTATTCAGAATATATTAAAAACGTGTGCATAATATATGATATGAATATTACCGACTTATTTTTATATTCAGGATTATGGGAAACATCTTGGACAATCAAATGGCAGTGATCAGTGAGCAAAATAACTAGCATAGTCCGGAAGGCATATTATCCCAATACAAGTTCCAAATACGCAATGCATCGTCACGTGCATCGTAGTTTACAAAAATACAGTTAAAATTATCTTCTTCTAACGTGGAATTTCAAATGAAATTGCTTTTGATTATGcgttttattgtatttattccaCTGATCTGTGCTCATTTTTGCATGACCAGTGTCACCCTATACCCGCTCAATTGAGCCCAATAACCTGCTTTTATGACCAGATTAATGGAACTCGTGTTACATTATGTGAAAGTGCAATCTACACGCATTTATCTAATGAAATGTAAGAATCTATATTACTCTTTTTCTTGTGGTCCACATCCACCCTTTTCATTATCATAGATTCATTTCATGAGTAAacagatattgtgtgtgtgtgtgtacgcacagCTTTCATCTACTCATTCTTTGATGTAATATCCTGGAACAAAAATTAAGAACAAAGTTATTGACCACGTTAATGTAAAACATGTGGTTGCCTGAggtcaaaataaatgtaatttaataTTTGAGAA

Function

NR:

description
zinc finger protein 616-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612628.2 True 5080 mRNA 0.39 4 46003081 46008988

Neighbor

gene id symbol gene type direction distance location
LOC110529945 LOC106568641 coding upstream 28073 45964664 ~ 45975008 (+)
stard3nl stard3nl coding upstream 242842 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 294569 45692358 ~ 45708512 (+)
ranbp9 ranbp9 coding upstream 326696 45651211 ~ 45676385 (+)
rnf182 rnf182 coding upstream 388788 45611353 ~ 45614293 (+)
slc39a6 slc39a6 coding downstream 255652 46264640 ~ 46293864 (+)
cldn15la LOC106568649 coding downstream 343798 46352786 ~ 46356523 (+)
saga LOC106568650 coding downstream 353657 46362645 ~ 46376820 (+)
LOC110529955 NA coding downstream 369451 46378439 ~ 46384254 (+)
proca proc coding downstream 390031 46399019 ~ 46406905 (+)
G712052 NA non-coding upstream 4609 45998083 ~ 45998472 (+)
G712051 NA non-coding upstream 5182 45997660 ~ 45997899 (+)
G712049 NA non-coding upstream 5914 45996957 ~ 45997167 (+)
G712048 NA non-coding upstream 9746 45993124 ~ 45993335 (+)
G712039 NA non-coding upstream 12552 45990263 ~ 45990529 (+)
G712074 NA non-coding downstream 41148 46050136 ~ 46050480 (+)
G712079 NA non-coding downstream 44811 46053799 ~ 46054010 (+)
G712061 LOC106568643 non-coding downstream 113779 46122767 ~ 46126238 (+)
G712121 NA non-coding downstream 133751 46142739 ~ 46144022 (+)
G713292 NA non-coding downstream 237091 46246079 ~ 46246404 (+)
G711912 NA other upstream 208532 45793269 ~ 45794549 (+)
G711845 NA other upstream 355704 45646857 ~ 45647377 (+)
G711021 NA other upstream 1554108 44448584 ~ 44448973 (+)
G709490 NA other upstream 2805439 43196560 ~ 43197642 (+)
G708448 NA other upstream 4618898 41380025 ~ 41384183 (+)
G713405 NA other downstream 456410 46465398 ~ 46466227 (+)
G713574 NA other downstream 706927 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2528755 48537743 ~ 48544164 (+)
G716133 NA other downstream 2751355 48760343 ~ 48760740 (+)
G716862 NA other downstream 3323853 49332841 ~ 49333772 (+)

Expression


Co-expression Network