ift57 (ift57)


Basic Information

Item Value
gene id ift57
gene name ift57
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46061743 ~ 46074046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612634.2
ACTGGAACGTAAACGAAAGGTTGTTACGTAAGGACGCAAATAAAGTTACGTTAGGACGCATGTCGCCTGCTCCAGCTAAATATGTGCAAGAGTTATTGATACAACTACTTGAATATTCATCTCAATACACAGGGTTGCTTGACAACACAGATGGTAACCAAAACAAGCTGAAGAAGACTACGCTGATCTGCATCAAAAATTGGTCAATCACAAATTGGGTTATTGTTAGCCTGCAAGAAGTGCCAAGAGAGAGATGGTAGATGACAATAGACGAGGGGACGATGAACGGGGTCCTGGAGCAGCATATCAAATGTTCGTGGTTATGGAGGACCTGCTGGACAAATTGAAGCTTCTGGATTATGAAGAGGAAGTTCTGGCAAAGCACAACATGAAAGCTCTATCCAGGCATTACTTTGCATCCAGTGCCTACATGCCATCAAATCCAGGGGAGCAATTCTTCATGTTTACCATAATCGCGTCTTGGCTCATCAATGCAGCAGGGAGACCCTTCGAGCAGCCTCAGGAGTATGACGACCCCAACGCCACTGTGTCCAACATTCTCTCACAGTTGAGAGCTTTTGGAGGACTGGTAGACTTTCCTCCCTCCAAACTAAAAGCTGGTTCAGGGGAACATGTTTGCTATGTGCTGGATCGGCTGGCTGAAGAGGCTCTGAAGGAGAGAGTGTTTTCCTGGAGAAGACCAAACTACCCTACAGAGGAGATGGAAGAAGAGTCTGTGATGGAGGATGATGCAGAGCTGACTCTCAGTAAAGTGGAAGAGGAGATGACAGAGGAACCAGACGACTGTGAGGAAGAGAACGTCATGGATCTAGAGGCACTTAAATCAAGGACCAATCAAAGTGAGGCCAGACTATCTTCAAAGCCAGACAATATACTGGAATCAAACATGGACGCTGCCGAGTGGAATCTAGAGGTCGAGCGGGTTCTCCCACAACTGAAGGTCACAATCAGAACAGACCACAAGGACTGGAGGATCCACGTGGACCAAATGCATCAGCACAAAGACGGGATCAAATCATCTCTCAAGGAGGCCAAGGGCTACCTAGACAAGCTGCAGGAGGAGATCGGTAAGACACTGGAGAAGGTGGGCAGCAGAGAGAAATACATCAACAACCAGCTGGAACACCTTATCCAGGACTACCGCAGCGCCCAGTCCAAACTCAGCGAGGCAAGGGAATGCTACCAGCAGGGAAGTGGTGGAGTTACAGAGAGGACCAGAGTTCTGGCTGAGATCACAGAGGAGTTGGAGAAGGTGAAgcaggagatggaggagaagggcAGCAGTATGTCTGATGGAGCCCCGGTGGTGAAAATCAAGCAGAGTCTGACCAAGCTCAAGCAGGAGATTGTTCAGATGGACATTCGGATTGGAGTGGTAGAGCACACACTACTGCAGGCCAAGCTAAAGGAGAAGTCCAACATGACTCGAGACATGCACGCCACCAATATCCCAGAGCCTGCCATCGGCGCATACTGAGATATACACAGTATGGCATTATCTATCATTAGCTTACTGAACTTTATATAGCGATACATTATGCCTGCGCAATGATATTATTTACATGGTATGGCACCTGCTATGAGAAGGCAAGCAGTGGGTTACATCCTGACTACAGCCAATATACCAAAGTCCTTAAATTATTCTAAACGGTCTGTTTAAGCAGACACATAGAGAGACATCTGTATtgttctgacttcaactgtcatATGTTTCATCATATTTGATTGCATTCGAAGGCTTTGTTGGCGTGGTTGAATTAAAGTTTCTCAGTATTTACATACATTAGAATTATAAAATACAGATTTGAATGCCCATATGTTTTACATCCAGGGGTTAAGTTTGCTAATTGCCATATTTGTAATGGAGATAATTAaactgatatttttttttacaaataagaAGTTGTATAATAGTACTGATGTGGATTTGATGGGGACATTTATTTTGACTTTTTGATGTGGTAAGGCTCATGAAATGTCTGGAAAGGTGAAATTATACATGCATCCAGCAATTTGTAACGAAAATAATTGTACCATATAGAAAAGTGGAAATACTTACAAAGTCGGCTGAGATTGATTGCCAGCAGTGTTTGCTATGTCAGGGTACATGATGAAACATTAATATAAAAATCCAAAAGTAACTTTGGAATTCATAAC
>XM_036985498.1
CGTAAGGACGCAAATAAAGTTACGTTAGGACGCATGTCGCCTGCTCCAGCTAAATATGTGCAAGAGTTATTGATACAACTACTTGAATATTCATCTCAATACACAGGTACTATCTGGATATATTTGATATAGAGATAATCGTTCCGACAAAACGTTTTTAATTAACCAAGGATATGTTAACTAACGTTATCTGGCTATATTAGGGTTGCTTGACAACACAGATGGTAACCAAAACAAGCTGAAGAAGACTACGCTGATCTGCATCAAAAATTGGTCAATCACAAATTGGGTTATTGTTAGCCTGCAAGAAGTGCCAAGAGAGAGATGGTAGATGACAATAGACGAGGGGACGATGAACGGGGTCCTGGAGCAGCATATCAAATGTTCGTGGTTATGGAGGACCTGCTGGACAAATTGAAGCTTCTGGATTATGAAGAGGAAGTTCTGGCAAAGCACAACATGAAAGCTCTATCCAGGCATTACTTTGCATCCAGTGCCTACATGCCATCAAATCCAGGGGAGCAATTCTTCATGTTTACCATAATCGCGTCTTGGCTCATCAATGCAGCAGGGAGACCCTTCGAGCAGCCTCAGGAGTATGACGACCCCAACGCCACTGTGTCCAACATTCTCTCACAGTTGAGAGCTTTTGGAGGACTGGTAGACTTTCCTCCCTCCAAACTAAAAGCTGGTTCAGGGGAACATGTTTGCTATGTGCTGGATCGGCTGGCTGAAGAGGCTCTGAAGGAGAGAGTGTTTTCCTGGAGAAGACCAAACTACCCTACAGAGGAGATGGAAGAAGAGTCTGTGATGGAGGATGATGCAGAGCTGACTCTCAGTAAAGTGGAAGAGGAGATGACAGAGGAACCAGACGACTGTGAGGAAGAGAACGTCATGGATCTAGAGGCACTTAAATCAAGGACCAATCAAAGTGAGGCCAGACTATCTTCAAAGCCAGACAATATACTGGAATCAAACATGGACGCTGCCGAGTGGAATCTAGAGGTCGAGCGGGTTCTCCCACAACTGAAGGTCACAATCAGAACAGACCACAAGGACTGGAGGATCCACGTGGACCAAATGCATCAGCACAAAGACGGGATCAAATCATCTCTCAAGGAGGCCAAGGGCTACCTAGACAAGCTGCAGGAGGAGATCGGTAAGACACTGGAGAAGGTGGGCAGCAGAGAGAAATACATCAACAACCAGCTGGAACACCTTATCCAGGACTACCGCAGCGCCCAGTCCAAACTCAGCGAGGCAAGGGAATGCTACCAGCAGGGAAGTGGTGGAGTTACAGAGAGGACCAGAGTTCTGGCTGAGATCACAGAGGAGTTGGAGAAGGTGAAgcaggagatggaggagaagggcAGCAGTATGTCTGATGGAGCTTTTTGAATTACAGCCCCGGTGGTGAAAATCAAGCAGAGTCTGACCAAGCTCAAGCAGGAGATTGTTCAGATGGACATTCGGATTGGAGTGGTAGAGCACACACTACTGCAGGCCAAGCTAAAGGAGAAGTCCAA

Function

symbol description
ift57 Acts upstream of or within several processes, including cilium organization; epithelial cilium movement involved in extracellular fluid movement; and photoreceptor cell maintenance. Predicted to be located in ciliary basal body. Predicted to be part of intraciliary transport particle B. Predicted to be active in Golgi apparatus; centrosome; and cilium. Is expressed in head and retina. Human ortholog(s) of this gene implicated in orofaciodigital syndrome. Orthologous to human IFT57 (intraflagellar transport 57).

NR:

description
intraflagellar transport protein 57 homolog

GO: NA

KEGG:

id description
K04638 IFT57, HIPPI, ESRRBL1; intraflagellar transport protein 57

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612634.2 False 2178 mRNA 0.44 12 46061743 46074046
XM_036985498.1 True 1526 mRNA 0.47 11 46062481 46074020

Neighbor

gene id symbol gene type direction distance location
tmem71 tmem71 coding downstream 28743 46006411 ~ 46033000 (-)
amph amph coding downstream 137013 45793248 ~ 45924730 (-)
nol7 nol7 coding downstream 376751 45678859 ~ 45684992 (-)
retreg1 fam134b coding downstream 460179 45509081 ~ 45601564 (-)
znf622 znf622 coding downstream 566642 45485018 ~ 45495101 (-)
cavin4a LOC106568643 coding upstream 48698 46122744 ~ 46133988 (-)
tmeff1a tmeff1 coding upstream 89607 46163653 ~ 46241437 (-)
crfb16 LOC106568648 coding upstream 235686 46309732 ~ 46325685 (-)
LOC110529956 LOC106568794 coding upstream 314896 46388942 ~ 46395118 (-)
dusp28 LOC106568652 coding upstream 333687 46407733 ~ 46417579 (-)
G713164 NA non-coding downstream 24283 46037246 ~ 46037460 (-)
G713150 NA non-coding downstream 59282 46002159 ~ 46002461 (-)
G713142 NA non-coding downstream 69638 45991815 ~ 45992105 (-)
G713141 NA non-coding downstream 70524 45990943 ~ 45991219 (-)
G713114 NA non-coding downstream 106669 45954871 ~ 45955074 (-)
G713201 NA non-coding upstream 42630 46116676 ~ 46119814 (-)
G713203 NA non-coding upstream 46008 46120054 ~ 46120821 (-)
G713202 NA non-coding upstream 47236 46121282 ~ 46121731 (-)
G713211 NA non-coding upstream 62685 46136731 ~ 46136938 (-)
G713287 NA non-coding upstream 167810 46241856 ~ 46242057 (-)
G712814 NA other downstream 603495 45457777 ~ 45458248 (-)
G711133 NA other downstream 1522239 44538793 ~ 44539504 (-)
G709454 NA other downstream 2890661 43170760 ~ 43171082 (-)
G709272 NA other downstream 3341044 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 6102130 39956961 ~ 40017167 (-)
LOC110529973 LOC106568664 other upstream 977421 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 1104378 47178424 ~ 47178736 (-)
G715865 NA other upstream 2214896 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 2468245 48356004 ~ 48616588 (-)

Expression


Co-expression Network