cavin4a (LOC106568643)


Basic Information

Item Value
gene id cavin4a
gene name LOC106568643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46122744 ~ 46133988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612635.2
CCCTCTGAGCGCTTGTTTTGTAGGTCCACTCTTGATCCTGCAGCCTATTCTAAAAGGGTAGGAGAAGTCTGCTTCCTCTTTTGCACCAGACCTGAGTTGGGTCACTGTGGTAGGTAGTCACGTCTCTGGTCTCTTAGTCGGTGGTACCTCAATGGTCTTGGAGCTATCCAAATAAACCCAAGTCTAACCAGATATCCTCAAGTTCTCTGCACTTGCATCAAAGTTTCAGCACTTCAGTGTTGTTCACTCGGCTTCTTCACCCAACATCCAAGTTTCCCTTTTGCCTTTCGAGGAACACTTCCATGGATCAGTCAAAGTATCGCATGGCCGGCGTGCAGGACAAGCTGGAGGTGCTGGGGGTGGAGGACGATGCGGGCAATCCCATCAGCGCCCTGACCATCCTGTCGCTGCTGGAGCGTGTGGCAGGCATCATCGACAACGTCCAGGCTGGCCAGCAGCGCATGGAGGAGCAGCAGCTGGACCTGGAGACCAACATCAAGACCATCCAGGGTGATGTCCTGAAGCTAGCCAAAGACCACACCACCACCAGTGGCACCGTGGAGAAGCTGCTCCAGAAGACGCGTAAGGTCAGCTCCAATGTCAAGGAGGTGCGCACGCGGGTGGAGAAGCAGAACTTGCGTGTCAAGAAGGTGGAGACCACACAGGAGGAGCTGCTGACCAGAAACAAGTTCCGGGTCATAATTTATCAGGGGGAACATGAGATCCCTTCGGTGGCCGTGACAAAGACCCCAAAAGGAGTTGTTGGTATGGAGGGGTTGGTGATCGAGCCAGACACCTACGATGTCCCCGGGGACATCTCCTCAGATGAGGAATACATGACAGTGGACGAGACTGAAGGAGGATCCAGAACTGCCCGCTTGAAGGCGTCAGGCATGAAGGGCATTGAAAGCATCAAGCAGGCCTTCTCCAAGGAGACCATGACCAAGACCAAGGACAACTTGGGCACCAAGTTCCACAACATGGGCGAGAAAATGGTGCCCCCCGAAAGACGGGAGAAGATGCACCAGGCCAGCGAGCGCATCAAGCACTCTGGCGAGAGGCTGAAGGAGAACATCGCCAAGAAGGCCCCCACCAAGGAGTCCTTCCGCATCAAgctgaagaaggagaggaccgtGGCCGAGGGCCAGGAGGGAGCTGAGGCTGACGGGGAGGTCGATGAGGCGGTGACCCCAGTCAAGGGAAGAAAAAGCCCGGAAGTCAGTAAAACCCCAGTAGTAACCTACACGGAGGTTGTAACGGAAAGGGAAACCAAGAGGGAGGGTCCCGTGGAGGAGCCGGCCGCCATCCGGATAGGGGAGGTAGGGAAATTCACTGTGGAGGCAGTGGAAGAGGGCAAGGAGGACGAATACGACAGGAAGTAGATCTCCAGCATGTTGCCGCAACACAACGAGAAGTCACCAAAATAGGAAGTGAAGCCGGGTAGGAAGAGAGCTTGCGGTGCCTTGCAAGAGAGATTGTCTGTGACGAATCAACATCGACGACAGACAATTTACATTATCAATCCGTTTAAAAATCAAAGCGATACATCTgttgaatatacagtaccagccaaaagtttggacacaactattcattcaagggtttttctttatttttacaattttctacattgtagaataatagtgaagacatcgaaacgatgaaataacatatatgaaTCATGTGAAAGTGGTTGATAGAATGCCcggagagtgcaaagctgtcatcaaggaaaaggatggctactttgaagaatctcaaatatataatatattttgatttgtttaacaattttttggttactacatgattccatatgtgttattccatagttttgatgtcttcactattattctacaatgtagaaaatagtaaagataaagaaaaacccttgaatgagtaggtgtgtccacacttttgactggtactgtgtatactgACCAGTCGACAGAGGAGTGGAAGGAGTTCTGTGACTGACCTGTTATCTATAAAGATTGTGTTTCTGGGGTGTCAGATGTTGGTAGGTTAGTGACCCACTGTCACGTGTCATTGAAATTGGCTGTTATTATTTTCAACTTTGGAATGATTTTTAACGATATGGGTTGTAAATGTACGTGGACACATTCACACAAGAACACAGAGAAATATGTAAAATGTAACATTTTCATGGAAAGACATATTGGGATGAATTCAGGTCAGGGGTTGTTTGGGGCAACAGTACATAATGATTGGGCACATTGGTAACTACTGTACATGAACTGCTATGTTGCTTTTGGCGTTAAAGTTAagtacacacaaaaacaaattgTTCCCAGATGTTTGGTTGCTAATCGATTTCTTTGACTAGTCAAGAAAAAACGCTTGCAAGTTAGaaattaatttccacaaagtgttTGGAAGGGAAAAGAGTTTAACtgaaaggagaaaagagagattgCAAAGTACCTTTGAGGTGATTCTGAAGGTTGAGGAAGTTTGTGTATGATATTGATCTTAAATCTGAATGTAAAATGTTGTACATAGCATAACCGTAATCATGATATTGGTCAACACAGATCTCAGCTGGCCTCTGAAGAGTTTGAAAAAGTCAAGCTATACAGATATAAaactactgtatatagatatGAATGACAGATAGGGTTCTGTGTGTTTCAAAATCCAACAATGATTGACCATTTGGTTACAATGGGTTCTATGGCAAGGTTACAGACAAGATGCAGTAGGTAACTTTTAATTTAGCCATTAACAAGCAGACGCATCGTAATAACAGTTGAAGATAATGTTGAATCAAAATGTATCCATATGGTCGAAAAGCACACTAACTATTTAGCCTGGAATAAAATGCTTTTCTATTACAAGAGGTCATGCAAAGCTTGAGAGTTAAATGTCATCTTTCAACTGAACTATGCGCTGTGAATTTAATTTCAGTGGTCTGAAGATAACTAGATCGTAGTGTGTATGATTGTGTAGTGTACTAGTGttaataagaaaataaaaatatatatttgaggaAAGCATTAAGTCATGTAAATGGCTTTAGGGGTACCTGTAACATTTATGGCACTAGAAGGTTTTGAGCACTGATGTAATTCTGTGCAACACTATGAGGACTTCGACAGAAAAGGTAACACGTGTATAAAGATTACAAAGCAACCTAATATTTCAAAGTAATTTTTTTCTGAATACAGTTTACAGCATGTTTATGCCCTTCTTTTGATCACGTAGAGATGCATTGCTTTAATTTGTTATGCTAATAATGGCATCAACGATCCAAAGGGAAATGTACATTCTGCTGTGCTCACATATCTGTGGGCTGAGTCTAACTTGTAGACCTACAGTAATTCATGTTCAACCACAAAGAAACGTGTATGTTAATATACTAATGCATTAGGCCTAAGTAATGTGGATTCGCCTGATTTGAGCCCAAAGTATTGATGGCAATGAGTAATGAGAAGTACAATAGGTAGTGGTGTGTAGTTGAATTGTTTCTTACTAATTCACAGGAAATGATTGTCAATGAAGTATGTGTGCTACATAATTTACAAAAATGTGTAGTCACTTTTTTTATTATCTTTTGCCAGACCCCTTGCCAAATATTTCCTAAAAGTGCCAATGTTTTCTTGAGTTCACCATCCAGGCATTGTCGCTGTTCTTAGCAAATTAACCAGCTACATTGATTCTGGGATTGTATCCTGCAATAAGGCACATCCTTTTATTCATTGGCACtattattttgtttatttgtttgttttctgTGTAGTGATACATATACTTTAGATAAAAGGACATTAGCATATTTTGTATTGAAATTCTCATTAATATGTGTAACCATGCAAATGAAGAATAAGAAGTACGTTTGTGTTCTAAATCAACCTCTTATTTAATTTAGACAATGTAGCCCAATGTTAGACCAATTGAATCAAAACTGGCAACTGGATCTCCAAAAACCTCCCCTGTGGCCTGCTATTGTCAGATAAAAATAGGATTGATGAAAGTCGAATGGGTATGCTATATTGATGGAAAACAACACTTGTCATTGATATGCATTGTGGTATGTGACACGTGCAAGCAGCATCGCATATATTCATGATTGTTTTCTTTTTGTATTAATAAAGGCCTAATGCCACCTGTATTAATCAAAACAATATCA

Function

NR:

description
muscle-related coiled-coil protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612635.2 True 4150 mRNA 0.42 2 46122744 46133988

Neighbor

gene id symbol gene type direction distance location
ift57 ift57 coding downstream 48698 46061743 ~ 46074046 (-)
tmem71 tmem71 coding downstream 89744 46006411 ~ 46033000 (-)
amph amph coding downstream 198014 45793248 ~ 45924730 (-)
nol7 nol7 coding downstream 437752 45678859 ~ 45684992 (-)
retreg1 fam134b coding downstream 521180 45509081 ~ 45601564 (-)
tmeff1a tmeff1 coding upstream 29665 46163653 ~ 46241437 (-)
crfb16 LOC106568648 coding upstream 175744 46309732 ~ 46325685 (-)
LOC110529956 LOC106568794 coding upstream 254954 46388942 ~ 46395118 (-)
dusp28 LOC106568652 coding upstream 273745 46407733 ~ 46417579 (-)
sft2d3 sft2d3 coding upstream 328637 46462625 ~ 46463692 (-)
G713202 NA non-coding downstream 1013 46121282 ~ 46121731 (-)
G713203 NA non-coding downstream 1923 46120054 ~ 46120821 (-)
G713201 NA non-coding downstream 2930 46116676 ~ 46119814 (-)
G713164 NA non-coding downstream 85284 46037246 ~ 46037460 (-)
G713150 NA non-coding downstream 120283 46002159 ~ 46002461 (-)
G713211 NA non-coding upstream 2743 46136731 ~ 46136938 (-)
G713287 NA non-coding upstream 107868 46241856 ~ 46242057 (-)
G713293 NA non-coding upstream 112077 46246065 ~ 46246429 (-)
G713660 NA non-coding upstream 120488 46254476 ~ 46339044 (-)
G713667 NA non-coding upstream 130392 46264380 ~ 46272772 (-)
G712814 NA other downstream 664496 45457777 ~ 45458248 (-)
G711133 NA other downstream 1583240 44538793 ~ 44539504 (-)
G709454 NA other downstream 2951662 43170760 ~ 43171082 (-)
G709272 NA other downstream 3402045 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 6163131 39956961 ~ 40017167 (-)
LOC110529973 LOC106568664 other upstream 917479 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 1044436 47178424 ~ 47178736 (-)
G715865 NA other upstream 2154954 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 2408303 48356004 ~ 48616588 (-)

Expression


Co-expression Network