slc39a6 (slc39a6)


Basic Information

Item Value
gene id slc39a6
gene name slc39a6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46264640 ~ 46293864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612640.2
CACCCTATTGCACATTTTGGCCACCAGACGTCTCTCCTGCCGAGATAAATACTATAGTCAGCACTATTCTGTACCACACACACTTCATTCGAAGGAAGGTTTGGAAGAAACGTGTATCCTACAAGCACTACGGTTTCCAGAGGGAATGGCAACGAGGAGGTGGGCAGCAGCTGCCCTGGCAGTGCTGGGTCTTGCTATGTGTTGGCCCTGCTCTACTGGGGACACTGGTCCAGAGTGCACTCGTGTCACTGGGGAGACTGGTAAAAGTGGCAGTGAGTTTCTGTCCACTATCGACACCCAGATGGCAGAACAGACCCAGCGGCAGCACCTGGAAGCTCTCTTCGACAGGTACGGGGAGAATGGCACCATTTCGCTGGCAGGCCTGAAGCGGCTGTTGGAAAACGTGGGACTCGACCGAATACGAAAGGTCATGGTGCAACACCATGAACAACCCGTGGACGACGGAGCGGAGGGGCATCGGCATGGACACCACAACCACCAACGTAACCACCAACACGAGGACGGCCACAATGGCACACACCGTCAAAAGCACTCCCACCGCCCCCCCATTGAGCCCAAAAAGGTTCCCGAGACCCCCAAGGTGCCTAAAGTAGATGACCCTGTCCTGGGGAAGAAAGTGGAGAATTCAGATGCCCACCATAACCTCTATGTGAAGAAAACCACTGCAGCGCAGGAGATTAGCACCACCACTGAGGCAGTGCGCAGTAGGCGGGAAGCCCCCACTGCTAGTCTGACCACTGTCATACTGGTCAGCAACTCTCTGGGGGCTGAGAACCAAACGCAGCCACCCATGGTCAGGCAGGAGGGCTCGGATAACCAGCACTTATATGACCACGATAATGACCATGATGATCACAACCATGATCatgaacacagtcatgaagaacaCAGTCATGATGACCACAGCCATGGTCAGGACAGCCTCCACAACCAGAGCCAAGATCACATACAGGAGAAAGCAGAGTGTTTGAATGCCTCCAGTATCCTGTCGTCCCATGGAATGGCCAAAGGGCCCCTGTCTCTCAGTGACTTCAGCTACCTCTGTCCTGCCCTTCTCAACCAGATCGATGCCAAGTCCTGCATACTGCACGGCAACCAAACACCCCAGCATGTCAACAAAGTTCACAAGCATAATAATCCCCATCACCATGGTCATCACAACCATGATCACACACACGAGGACCATCAAGTGAATGAAAACAACAAGAAAGTAGGCTCAATTCAAGCAGCGTGGGCCGGCGGCTTTgtctccatcaccatcatcagcCTGCTGTCCTTGGCTGGCGTGGTGCTCATCCCGTTGATGAACCGGGTCTTCTTCAAGTTCCTGCTCAGCTTCCTGGTGGCGCTGGCTGTGGGCACGCTGAGCGGAGACGCCTTCCTGCACCTCATACCCCACTCTCAGGGGGGCCACCACCATCCGCACTCTGTGAACAAGACATCAGGGCACGGTCTCCacggggaggaggaagaggaccatAACCTGGACGGGGTGTGGAAGGGGTTGACGGCCCTGGGCGGAGTCTACTTCATGTTCCTCATCGAGCACTTCCTCACACTGGGCAAAATGTACAAGGACAAACAGAAGGTGAAGAAATATGACCAGAATGATGACAAGGTGGATCCTGAGAAACTACCGGGCCTGGAGGAGAATGACCTAAAGCCAATTGAAGATGTGAATACTAACGGAGGTGGCAACTTCAGCGACCACCACAGCGATGGGCTCCACCGGgtcagtgaggaggaggaggtaatgCTGGCGCCCGCCACCTCACCCGAGGGCTACGCCTCCATGTCGGGCTCGGCTGCTGCCACCTACACAGCAGGGGACTGTGAGAACAAGTGTCACTCCCACTTCCACGACACGGTGGGCGAGGCAGACAacctgcaccaccaccaccacgaatACCATCACATcctgcaccaccaccactctcagAACCACCATCCACACAGCCACTCGCATTCGTACTCGGAACAGCACTTCCAGCAGGCGGGTGTGGCCACGCTGGCCTGGATGGTTATCATGGGCGACGGGCTGCACAACTTCAGTGACGGCCTGGCCATCGGGGCGGCGTTCACGGAAGGGCTGTCCAGTGGCCTCAGTACGTCGGTAGCCGTGTTCTGCCATGAACTGCCTCACGAGCTGGGTGACTTCGCTGTGCTGTTGAAGGCTGGCATGACAGTGCGACAGGCCATTCTCTACAACATGCTGTCTGCCATGATGGCGTACCTGGGCATGATCACGGGCATCCTCATTGGGCACTACGCTGACAACATCTGCATGTGGATCTTCGCCCTCACCGCCGGGCTCTTCATGTATGTTGCCCTGGTGGACATGGTCCCGGAGATGCTCCACAACGATGCTGGGGACCACGGCTTCAGCCACTGCGGCTTCTTCCTGCTCCAGAACGCAGGCATCCTGTTGGGCTTCTGCATCATGTTGCTCATCGCAATCTTTGAACACAAAATCCAGCTGGAAATAGACCTCTAAACTGATGGATCTCAAACCTGGTCTCCAAGGACCCCTGTGTTTGCAGGTTTGAATCCAAACCGAACTTGGTACTGGGAGAAGGAATAGATTAATCGAACATGGTTAGTTGATTAGAACAGAATGTAGCCTTAAGTTCGATTGTAAGCCTACATTCACAGGCATCCTTGGAAAACCAGCAGTGTTAAGAAACACTCCTCAAACTGACAGGACCAAGCGCCTTGTGTCTCACCTGCCGAGTGGCCACATCACGAGTCAGCCATTACTGTGTctttccctctcatctcctccaagAAGTGAAAAAGAAATGAATAGTGTGAACATTTCTTTTTGGTCAAGGTTCACCTGTTGCAAAATGTCAATTGGCACGTATTCTGTATGTGTTTTTTATGTCTGTCAAACCTTTGTTGCATAGTTGTCTGTCTTCCCTCAGTGTGCTTCATGTTTTATTTCTGGTCAAGatttacagtaaaaaaacaaaatggagGACTGTTTTGTTGACTGGGTGTTTGGAAAGGACAAGCTTTGTTTGTGGGCGTCAGAACAAGGGCCAATCCTTTAAATCTTGTGTTTATTTAAAATCCACAAGGGTCAAGTGAAAGCTCATTGATTGGGCAAAGAGGCTCCATGCCCAATTTCAGGGCACTGTACCACAGGTTGTGACTTTAAACATTGTAAGTGCCAGTCGGCTTGAGCCTGTTTTAATCCCAACCTATCCCACCTCCTTGGTAATAGTGCACCAAGTCTTTAAATGCCCGATTTAAATGAACTTAGATCAGTCTTTTAAGTCTGTTACATTGTCCACAGAGGAAACACTTGGTTGTAAATGTGTTGTAAATTAGCCTTGATTTGCAGAGCTATTTCAGAGGTACAGTATCTCACAAGTAACACTGTGTGGAGCATTTTCTCCCATGAAAGTAGTCCATTAGAGAAAAAAGGCTCCATCTCTATCCCTAAGTTTGTTAATTTAGCCAGTGTCAGTAGGATATCCAGTCATGGGACTAGATAGATAGCAATCGATCTGATACATAAATACTAAGTGATTATAGTGGTAACTTCTTTCAAAGGTCCTATGATGAATGTGTGATCTATGTCTGTTCAGAATGAAGCCACTCAAAGTGGTATTATGTTTTTAAGTTATCGTGCCAATATCTCATCTCGCTGTGTATTGAGAAGATAACCAAAGGTTTGGTTAggaaaaatgtatgttttcatCCGTTTCACACTGTTTAGGAAGAGGTATATCATGAAGAGaacctgtttgtttgtgtgccatTATTTTACTGTTGTGTACGTCAGGCAGCTTTGGATGTAATATGTGTTACTTTACATTCCAGAAGAAAATAAAAGTTATTGCCTACCACC
>XM_036985499.1
ACATTTTGGCCACCAGACGTCTCTCCTGCCGAGATAAATACTATAGTCAGCACTATTCTGTACCACACACACTTCATTCGAAGGAAGGTTTGGAAGAAACGTGTATCCTACAAGCACTACGGTTTCCAGGTACGGGGAGAATGGCACCATTTCGCTGGCAGGCCTGAAGCGGCTGTTGGAAAACGTGGGACTCGACCGAATACGAAAGGTCATGGTGCAACACCATGAACAACCCGTGGACGACGGAGCGGAGGGGCATCGGCATGGACACCACAACCACCAACGTAACCACCAACACGAGGACGGCCACAATGGCACACACCGTCAAAAGCACTCCCACCGCCCCCCCATTGAGCCCAAAAAGGTTCCCGAGACCCCCAAGGTGCCTAAAGTAGATGACCCTGTCCTGGGGAAGAAAGTGGAGAATTCAGATGCCCACCATAACCTCTATGTGAAGAAAACCACTGCAGCGCAGGAGATTAGCACCACCACTGAGGCAGTGCGCAGTAGGCGGGAAGCCCCCACTGCTAGTCTGACCACTGTCATACTGGTCAGCAACTCTCTGGGGGCTGAGAACCAAACGCAGCCACCCATGGTCAGGCAGGAGGGCTCGGATAACCAGCACTTATATGACCACGATAATGACCATGATGATCACAACCATGATCatgaacacagtcatgaagaacaCAGTCATGATGACCACAGCCATGGTCAGGACAGCCTCCACAACCAGAGCCAAGATCACATACAGGAGAAAGCAGAGTGTTTGAATGCCTCCAGTATCCTGTCGTCCCATGGAATGGCCAAAGGGCCCCTGTCTCTCAGTGACTTCAGCTACCTCTGTCCTGCCCTTCTCAACCAGATCGATGCCAAGTCCTGCATACTGCACGGCAACCAAACACCCCAGCATGTCAACAAAGTTCACAAGCATAATAATCCCCATCACCATGGTCATCACAACCATGATCACACACACGAGGACCATCAAGTGAATGAAAACAACAAGAAAGTAGGCTCAATTCAAGCAGCGTGGGCCGGCGGCTTTgtctccatcaccatcatcagcCTGCTGTCCTTGGCTGGCGTGGTGCTCATCCCGTTGATGAACCGGGTCTTCTTCAAGTTCCTGCTCAGCTTCCTGGTGGCGCTGGCTGTGGGCACGCTGAGCGGAGACGCCTTCCTGCACCTCATACCCCACTCTCAGGGGGGCCACCACCATCCGCACTCTGTGAACAAGACATCAGGGCACGGTCTCCacggggaggaggaagaggaccatAACCTGGACGGGGTGTGGAAGGGGTTGACGGCCCTGGGCGGAGTCTACTTCATGTTCCTCATCGAGCACTTCCTCACACTGGGCAAAATGTACAAGGACAAACAGAAGGTGAAGAAATATGACCAGAATGATGACAAGGTGGATCCTGAGAAACTACCGGGCCTGGAGGAGAATGACCTAAAGCCAATTGAAGATGTGAATACTAACGGAGGTGGCAACTTCAGCGACCACCACAGCGATGGGCTCCACCGGgtcagtgaggaggaggaggtaatgCTGGCGCCCGCCACCTCACCCGAGGGCTACGCCTCCATGTCGGGCTCGGCTGCTGCCACCTACACAGCAGGGGACTGTGAGAACAAGTGTCACTCCCACTTCCACGACACGGTGGGCGAGGCAGACAacctgcaccaccaccaccacgaatACCATCACATcctgcaccaccaccactctcagAACCACCATCCACACAGCCACTCGCATTCGTACTCGGAACAGCACTTCCAGCAGGCGGGTGTGGCCACGCTGGCCTGGATGGTTATCATGGGCGACGGGCTGCACAACTTCAGTGACGGCCTGGCCATCGGGGCGGCGTTCACGGAAGGGCTGTCCAGTGGCCTCAGTACGTCGGTAGCCGTGTTCTGCCATGAACTGCCTCACGAGCTGGGTGACTTCGCTGTGCTGTTGAAGGCTGGCATGACAGTGCGACAGGCCATTCTCTACAACATGCTGTCTGCCATGATGGCGTACCTGGGCATGATCACGGGCATCCTCATTGGGCACTACGCTGACAACATCTGCATGTGGATCTTCGCCCTCACCGCCGGGCTCTTCATGTATGTTGCCCTGGTGGACATGGTCCCGGAGATGCTCCACAACGATGCTGGGGACCACGGCTTCAGCCACTGCGGCTTCTTCCTGCTCCAGAACGCAGGCATCCTGTTGGGCTTCTGCATCATGTTGCTCATCGCAATCTTTGAACACAAAATCCAGCTGGAAATAGACCTCTAAACTGATGGATCTCAAACCTGGTCTCCAAGGACCCCTGTGTTTGCAGGTTTGAATCCAAACCGAACTTGGTACTGGGAGAAGGAATAGATTAATCGAACATGGTTAGTTGATTAGAACAGAATGTAGCCTTAAGTTCGATTGTAAGCCTACATTCACAGGCATCCTTGGAAAACCAGCAGTGTTAAGAAACACTCCTCAAACTGACAGGACCAAGCGCCTTGTGTCTCACCTGCCGAGTGGCCACATCACGAGTCAGCCATTACTGTGTctttccctctcatctcctccaagAAGTGAAAAAGAAATGAATAGTGTGAACATTTCTTTTTGGTCAAGGTTCACCTGTTGCAAAATGTCAATTGGCACGTATTCTGTATGTGTTTTTTATGTCTGTCAAACCTTTGTTGCATAGTTGTCTGTCTTCCCTCAGTGTGCTTCATGTTTTATTTCTGGTCAAGatttacagtaaaaaaacaaaatggagGACTGTTTTGTTGACTGGGTGTTTGGAAAGGACAAGCTTTGTTTGTGGGCGTCAGAACAAGGGCCAATCCTTTAAATCTTGTGTTTATTTAAAATCCACAAGGGTCAAGTGAAAGCTCATTGATTGGGCAAAGAGGCTCCATGCCCAATTTCAGGGCACTGTACCACAGGTTGTGACTTTAAACATTGTAAGTGCCAGTCGGCTTGAGCCTGTTTTAATCCCAACCTATCCCACCTCCTTGGTAATAGTGCACCAAGTCTTTAAATGCCCGATTTAAATGAACTTAGATCAGTCTTTTAAGTCTGTTACATTGTCCACAGAGGAAACACTTGGTTGTAAATGTGTTGTAAATTAGCCTTGATTTGCAGAGCTATTTCAGAGGTACAGTATCTCACAAGTAACACTGTGTGGAGCATTTTCTCCCATGAAAGTAGTCCATTAGAGAAAAAAGGCTCCATCTCTATCCCTAAGTTTGTTAATTTAGCCAGTGTCAGTAGGATATCCAGTCATGGGACTAGATAGATAGCAATCGATCTGATACATAAATACTAAGTGATTATAGTGGTAACTTCTTTCAAAGGTCCTATGATGAATGTGTGATCTATGTCTGTTCAGAATGAAGCCACTCAAAGTGGTATTATGTTTTTAAGTTATCGTGCCAATATCTCATCTCGCTGTGTATTGAGAAGATAACCAAAGGTTTGGTTAggaaaaatgtatgttttcatCCGTTTCACACTGTTTAGGAAGAGGTATATCATGAAGAGaacctgtttgtttgtgtgccatTATTTTACTGTTGTGTACGTCAGGCAGCTTTGGATGTAATATGTGTTACTTTACATTCCAGAAGAAAATAAAAGTTATTGCCTACCACC

Function

symbol description
slc39a6 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within cell migration involved in gastrulation and epithelial to mesenchymal transition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC39A6 (solute carrier family 39 member 6).

NR:

description
zinc transporter ZIP6 isoform X2

GO: NA

KEGG:

id description
K14712 SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612640.2 False 3877 mRNA 0.50 12 46264640 46293864
XM_036985499.1 True 3658 mRNA 0.50 11 46264651 46293864

Neighbor

gene id symbol gene type direction distance location
LOC110529944 LOC106568640 coding upstream 255652 46003081 ~ 46008988 (+)
LOC110529945 LOC106568641 coding upstream 289632 45964664 ~ 45975008 (+)
stard3nl stard3nl coding upstream 504401 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 556128 45692358 ~ 45708512 (+)
ranbp9 ranbp9 coding upstream 588255 45651211 ~ 45676385 (+)
cldn15la LOC106568649 coding downstream 58922 46352786 ~ 46356523 (+)
saga LOC106568650 coding downstream 68781 46362645 ~ 46376820 (+)
LOC110529955 NA coding downstream 84575 46378439 ~ 46384254 (+)
proca proc coding downstream 105155 46399019 ~ 46406905 (+)
wdr33 wdr33 coding downstream 126056 46419920 ~ 46462126 (+)
G713292 NA non-coding upstream 18236 46246079 ~ 46246404 (+)
G712121 NA non-coding upstream 120618 46142739 ~ 46144022 (+)
G712061 LOC106568643 non-coding upstream 138402 46122767 ~ 46126238 (+)
G712079 NA non-coding upstream 210630 46053799 ~ 46054010 (+)
G712074 NA non-coding upstream 214160 46050136 ~ 46050480 (+)
G713340 NA non-coding downstream 24783 46318647 ~ 46373541 (+)
G713366 sft2d3 non-coding downstream 168763 46462627 ~ 46463602 (+)
G713371 NA non-coding downstream 169978 46463842 ~ 46464558 (+)
G713404 NA non-coding downstream 170897 46464761 ~ 46465289 (+)
G713406 NA non-coding downstream 172429 46466293 ~ 46466733 (+)
G711912 NA other upstream 470091 45793269 ~ 45794549 (+)
G711845 NA other upstream 617263 45646857 ~ 45647377 (+)
G711021 NA other upstream 1815667 44448584 ~ 44448973 (+)
G709490 NA other upstream 3066998 43196560 ~ 43197642 (+)
G708448 NA other upstream 4880457 41380025 ~ 41384183 (+)
G713405 NA other downstream 171534 46465398 ~ 46466227 (+)
G713574 NA other downstream 422051 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2243879 48537743 ~ 48544164 (+)
G716133 NA other downstream 2466479 48760343 ~ 48760740 (+)
G716862 NA other downstream 3038977 49332841 ~ 49333772 (+)

Expression


Co-expression Network