Gene
RNA
| Item | Value |
|---|---|
| gene id | slc39a6 |
| gene name | slc39a6 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 46264640 ~ 46293864 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| slc39a6 | Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within cell migration involved in gastrulation and epithelial to mesenchymal transition. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC39A6 (solute carrier family 39 member 6). |
| description |
|---|
| zinc transporter ZIP6 isoform X2 |
| id | description |
|---|---|
| K14712 | SLC39A6, LIV1, ZIP6; solute carrier family 39 (zinc transporter), member 6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612640.2 | False | 3877 | mRNA | 0.50 | 12 | 46264640 | 46293864 |
| XM_036985499.1 | True | 3658 | mRNA | 0.50 | 11 | 46264651 | 46293864 |
46,248,000
46,252,000
46,256,000
46,260,000
46,264,000
46,268,000
46,272,000
46,276,000
46,280,000
46,284,000
46,288,000
46,292,000
46,296,000
46,300,000
46,304,000
46,308,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529944 | LOC106568640 | coding | upstream | 255652 | 46003081 ~ 46008988 (+) |
| LOC110529945 | LOC106568641 | coding | upstream | 289632 | 45964664 ~ 45975008 (+) |
| stard3nl | stard3nl | coding | upstream | 504401 | 45725701 ~ 45760239 (+) |
| epdr1 | LOC106568636 | coding | upstream | 556128 | 45692358 ~ 45708512 (+) |
| ranbp9 | ranbp9 | coding | upstream | 588255 | 45651211 ~ 45676385 (+) |
| cldn15la | LOC106568649 | coding | downstream | 58922 | 46352786 ~ 46356523 (+) |
| saga | LOC106568650 | coding | downstream | 68781 | 46362645 ~ 46376820 (+) |
| LOC110529955 | NA | coding | downstream | 84575 | 46378439 ~ 46384254 (+) |
| proca | proc | coding | downstream | 105155 | 46399019 ~ 46406905 (+) |
| wdr33 | wdr33 | coding | downstream | 126056 | 46419920 ~ 46462126 (+) |
| G713292 | NA | non-coding | upstream | 18236 | 46246079 ~ 46246404 (+) |
| G712121 | NA | non-coding | upstream | 120618 | 46142739 ~ 46144022 (+) |
| G712061 | LOC106568643 | non-coding | upstream | 138402 | 46122767 ~ 46126238 (+) |
| G712079 | NA | non-coding | upstream | 210630 | 46053799 ~ 46054010 (+) |
| G712074 | NA | non-coding | upstream | 214160 | 46050136 ~ 46050480 (+) |
| G713340 | NA | non-coding | downstream | 24783 | 46318647 ~ 46373541 (+) |
| G713366 | sft2d3 | non-coding | downstream | 168763 | 46462627 ~ 46463602 (+) |
| G713371 | NA | non-coding | downstream | 169978 | 46463842 ~ 46464558 (+) |
| G713404 | NA | non-coding | downstream | 170897 | 46464761 ~ 46465289 (+) |
| G713406 | NA | non-coding | downstream | 172429 | 46466293 ~ 46466733 (+) |
| G711912 | NA | other | upstream | 470091 | 45793269 ~ 45794549 (+) |
| G711845 | NA | other | upstream | 617263 | 45646857 ~ 45647377 (+) |
| G711021 | NA | other | upstream | 1815667 | 44448584 ~ 44448973 (+) |
| G709490 | NA | other | upstream | 3066998 | 43196560 ~ 43197642 (+) |
| G708448 | NA | other | upstream | 4880457 | 41380025 ~ 41384183 (+) |
| G713405 | NA | other | downstream | 171534 | 46465398 ~ 46466227 (+) |
| G713574 | NA | other | downstream | 422051 | 46715915 ~ 46769246 (+) |
| G716035 | LOC106581475 | other | downstream | 2243879 | 48537743 ~ 48544164 (+) |
| G716133 | NA | other | downstream | 2466479 | 48760343 ~ 48760740 (+) |
| G716862 | NA | other | downstream | 3038977 | 49332841 ~ 49333772 (+) |
