crfb16 (LOC106568648)


Basic Information

Item Value
gene id crfb16
gene name LOC106568648
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46309732 ~ 46325685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612641.2
CATCAGCACATCACACCTttcctctctcaaacacacacacttttataaGCTTTACCTACATAACCACTCTCTCAGACGCACCATAAAATGCTATTGATATGTCtttcacataaaaacacacatttataACAAACCTATTTATGTATTCTCGCAAACACATTCTGAGGTCATATGACAAGCCTTTTACAGGAGACACAGTGGGACAGCAAAGGAAGTGTGGCAGAGGAACCATCACAAGGACAGAGAAGAGTGCTAGGATCACAGTCATAGGAGAGGTCCCACTCCGTCTGAGGAAAGTTTGAGTTACAGTTGGTATAACAGTCTGCAGTGATCATGTTACAGTCGCAACAAGAACGATCAATGGACAACGAGATGACTATATTGCAAACATAAAAGCAGTGATCACACTATTCCTGGGATTGTTTGTATTACGATCAAATTAGTGGTGAGAGACGGTCAACACAGTGATTGCACACTTGATCACAGCAGTGCTCCTACTCTTCTCCATACAGAGGGGCTATGAGACTGAGAATGAGCTTTTTTGACAGCCAGTTAATACTTGTCCTCAACATCGTCACAAACTATGCCTGGCTGCTGCCATCGCCGTGGGGAATTTCCATGGAGTCTGTAAATATGAGGCACTTGCTCAAGTGGCGGCGTCAACAGTCTCCTTGCAGTTCTGTCATCTACTCTGTGCAGTTCCAGGGGGAATTTGAGCTGAGGATCTTGAATGGAAGTTGGGAGGACGCGGTTGGTTGTCAGCGGGTCACACGGACGGAGTGCGACCTGACCTTTGACCTTGGTTCTGACTCAGACTACAACATCCGCGTGCGGGCAGAGTGCGGAAGGCGTGTGTCACCGTGGGCTGAGCTCGGGAGGCCATtcaacaggagagagaCAATCCTGACGGTGCCAGCTATAACTGTGACCACCATGGGTGATGCTCTTCAGGTGACTTTCAAAGGCCTTCCCCTGACCGTGGGAGTGACTGTGACTATCTGGAAGAGAGGCGAGTTGGTCAGGGGCAAGTCCTCCTTGCGTGTGATCACAGTGCAACAGAATCCGCTCCACATCGACGCCCTGCAGGAGGGAGCAGTGTACTGCGTCAAAGCCCAGGCCCATCTGGACACCcacagcaaaagcagcagcactGACACACAGTGTGTCTCCATCACAGGTCCTGGACCTACCTGGCTTAAGCCCACAACAGTGACTGTTATCGTGGTGATATTAGCCGGCCTGGTGTTTTGTCTCTCTTGGTCAGTAACCCACTGTAGGCCAGAGGCCTGCTACGCCTATTTCCGCAAGGAGCCACAGCCCACTGCACTGCTCCTTGATTGGCCACTCACAAGAGTCAAGATCTATCCCCAAGATGAGCTTCGTGAGCCAATCCATGCCGTCCTTTTAAGTGAGCTGCAAAGAGAACTGAGAACTGAGCCATCCAGTCAATTGGATAAGTGGACACAATCTATATGTTCAGAAGGCACAGACAGACCATATCAAGTTTGATTGATACTGTAGGTTAATAAGAATGGTCAGAAGTGACGAGTCTGGATTGGAGAAGTCAGGAGGCCGGGAGTTGTTCGGAGGGAGACAGAAGGGtcttgtgtggctcagttggttagGGCAGTGATGCTTATAactccagggttgtgggtttgattcccatgagGGACCAGCATGAAAAGTGaatgcactcacttctgtaagtctgctaaatgacaaatgtcAATGTACAATTTAGTATTTGTGTTCTAGATAAGTCAGAGATGAATATGGGTGAGTCTCCAAATATAGGAACTTTATTTACATCATGATATGTTCTAATTCAATCTAAGACAATAACAAAGTCATTGTTTATATACTATTTCTATTAACAGCTGGCTATTCCAAACCATGACTCCGAAAATAAAGCAATGAATGATTTTAGTAATTTTTATTTCAGTAGAACATCTTGACTTGTTTTATCGAAAGATACTGATCTGATTAttagtttagtttatttttaaacttctttaaaaaaaaaatgatttcacTACCGTAATACACACACTAAAAGCCTGTAGAATGAATGTACCTTAAGCCACACCCCTACAAATATCACCAGGTGATGGGATTGCACCCCTCTACGTGGCCACATGGTGAATAGTCTGTTTGCAAAGATTTTGGAGAAAATTAGTGAGCAAGTTGGTAaatgtatgtattgtatgtatgtattttcAAGAAGAAGTGTCACTACCTATCTAATATATCAATAAATATGTAAAGTACGGTTTTGGgacaaaaatatacagtatgaTTGCTGGGATGTACATCTGTCCAAATGAAAGATCGCCCTCCATATGTTAGCTATGGGGATTCTTTATTAAAGTCCAAAATAAGTCTAAATTGTCACAACCCAAACAATTGACACCAGTAGTGATGCGTgcgtcagctgtttgttcacctgcaCCCGCCCACAAATGCTAATAACCCTTCTGCAACCGGCAGCCTATATGTGATAAATGTACCTTTTTAGATAGGCCTATGTTTCTGCTTATGTTAGAcatttttgtatgcattttgtgagtcaacttgtctatatgtagatacatgcagcttctcttctatCATTACTTGTTGctctagaagactaaataaacccttgctcaccgGAA
>XM_036985500.1
CATCAGCACATCACACCTttcctctctcaaacacacacacttttataaGCTTTACCTACATAACCACTCTCTCAGACGCACCATAAAATGCTATTGATATGTCtttcacataaaaacacacatttataACAAACCTATTTATGTATTCTCGCAAACACATTCTGAGGTCATATGACAAGCCTTTTACAGGAGACACAGTGGGACAGCAAAGGAAGTGTGGCAGAGGAACCATCACAAGGACAGAGAAGAGTGCTAGGATCACAGTCATAGGAGAGGTCCCACTCCGTCTGAGGAAAGTTTGAGTTACAGTTGGTATAACAGTCTGCAGTGATCATGTTACAGTCGCAACAAGAACGATCAATGGACAACGAGATGACTATATTGCAAACATAAAAGCAGTGATCACACTATTCCTGGGATTGTTTGTATTACGATCAAATTAGTGGTGAGAGACGGTCAACACAGTGATTGCACACTTGATCACAGCAGTGCTCCTACTCTTCTCCATACAGAGGGGCTATGAGACTGAGAATGAGCTTTTTTGACAGCCAGTTAATACTTGTCCTCAACATCGTCACAAACTATGCCTGGCTGCTGCCATCGCCGTGGGGAATTTCCATGGAGTCTGTAAATATGAGGCACTTGCTCAAGTGGCGGCGTCAACAGTCTCCTTGCAGTTCTGTCATCTACTCTGTGCAGTTCCAGGGGGAATTTGAGCTGAGGATCTTGAATGGAAGTTGGGAGGACGCGGTTGGTTGTCAGCGGGTCACACGGACGGAGTGCGACCTGACCTTTGACCTTGGTTCTGACTCAGACTACAACATCCGCGTGCGGGCAGAGTGCGGAAGGCGTGTGTCACCGTGGGCTGAGCTCGGGAGGCCATtcaacaggagagagaCAATCCTGACGGTGCCAGCTATAACTGTGACCACCATGGGTGATGCTCTTCAGGTGACTTTCAAAGGCCTTCCCCTGACCGTGGGAGTGACTGTGACTATCTGGAAGAGAGGCGAGTTGGTCAGGGGCAAGTCCTCCTTGCGTGTGATCACAGTGCAACAGAATCCGCTCCACATCGACGCCCTGCAGGAGGGAGCAGTGTACTGCGTCAAAGCCCAGGCCCATCTGGACACCcacagcaaaagcagcagcactGACACACAGTGTGTCTCCATCACAGTAACCCACTGTAGGCCAGAGGCCTGCTACGCCTATTTCCGCAAGGAGCCACAGCCCACTGCACTGCTCCTTGATTGGCCACTCACAAGAGTCAAGATCTATCCCCAAGATGAGCTTCGTGAGCCAATCCATGCCGTCCTTTTAAGTGAGCTGCAAAGAGAACTGAGAACTGAGCCATCCAGTCAATTGGATAAGTGGACACAATCTATATGTTCAGAAGGCACAGACAGACCATATCAAGTTTGATTGATACTGTAGGTTAATAAGAATGGTCAGAAGTGACGAGTCTGGATTGGAGAAGTCAGGAGGCCGGGAGTTGTTCGGAGGGAGACAGAAGGGtcttgtgtggctcagttggttagGGCAGTGATGCTTATAactccagggttgtgggtttgattcccatgagGGACCAGCATGAAAAGTGaatgcactcacttctgtaagtctgctaaatgacaaatgtcAATGTACAATTTAGTATTTGTGTTCTAGATAAGTCAGAGATGAATATGGGTGAGTCTCCAAATATAGGAACTTTATTTACATCATGATATGTTCTAATTCAATCTAAGACAATAACAAAGTCATTGTTTATATACTATTTCTATTAACAGCTGGCTATTCCAAACCATGACTCCGAAAATAAAGCAATGAATGATTTTAGTAATTTTTATTTCAGTAGAACATCTTGACTTGTTTTATCGAAAGATACTGATCTGATTAttagtttagtttatttttaaacttctttaaaaaaaaaatgatttcacTACCGTAATACACACACTAAAAGCCTGTAGAATGAATGTACCTTAAGCCACACCCCTACAAATATCACCAGGTGATGGGATTGCACCCCTCTACGTGGCCACATGGTGAATAGTCTGTTTGCAAAGATTTTGGAGAAAATTAGTGAGCAAGTTGGTAaatgtatgtattgtatgtatgtattttcAAGAAGAAGTGTCACTACCTATCTAATATATCAATAAATATGTAAAGTACGGTTTTGGgacaaaaatatacagtatgaTTGCTGGGATGTACATCTGTCCAAATGAAAGATCGCCCTCCATATGTTAGCTATGGGGATTCTTTATTAAAGTCCAAAATAAGTCTAAATTGTCACAACCCAAACAATTGACACCAGTAGTGATGCGTgcgtcagctgtttgttcacctgcaCCCGCCCACAAATGCTAATAACCCTTCTGCAACCGGCAGCCTATATGTGATAAATGTACCTTTTTAGATAGGCCTATGTTTCTGCTTATGTTAGAcatttttgtatgcattttgtgagtcaacttgtctatatgtagatacatgcagcttctcttctatCATTACTTGTTGctctagaagactaaataaacccttgctcaccgGAA
>TU811283
AGCACATCACACCTttcctctctcaaacacacacacttttataaGCTTTACCTACATAACCACTCTCTCAGACGCACCATAAAATGCTATTGATATGTCtttcacataaaaacacacatttataACAAACCTATTTATGTATTCTCGCAAACACATTCTGAGGTCATATGACAAGCCTTTTACAGGAGACACAGTGGGACAGCAAAGGAAGTGTGGCAGAGGAACCATCACAAGGACAGAGAAGAGTGCTAGGATCACAGTCATAGGAGAGGTCCCACTCCGTCTGAGGAAAGTTTGAGTTACAGTTGGTATAACAGTCTGCAGTGATCATGTTACAGTCGCAACAAGAACGATCAATGGACAACGAGATGACTATATTGCAAACATAAAAGCAGTGATCACACTATTCCTGGGATTGTTTGTATTACGATCAAATTAGTGGTGAGAGACGGTCAACACAGTGATTGCACACTTGATCACAGCAGTGCTCCTACTCTTCTCCATACAGAGGGGCTATGAGACTGAGAATGAGCTTTTTTGACAGCCAGTTAATACTTGTCCTCAACATCGTCACAAACTATGCCTGGCTGCTGCCATCGCCGTGGGGAATTTCCATGGAGTCTGTAAATATGAGGCACTTGCTCAAGTGGCGGCGTCAACAGTCTCCTTGCAGTTCTGTCATCTACTCTGTGCAGTTCCAGGGGGAATTTGAGCTGAGGATCTTGAATGGAAGTTGGGAGGACGCGGTTGGTTGTCAGCGGGTCACACGGACGGAGTGCGACCTGACCTTTGACCTTGGTTCTGACTCAGACTACAACATCCGCGTGCGGGCAGAGTGCGGAAGGCGTGTGTCACCGTGGGCTGAGCTCGGGAGGCCATtcaacaggagagagaCAATCCTGACGGTGCCAGCTATAACTGTGACCACCATGGGTGATGCTCTTCAGGTGACTTTCAAAGGCCTTCCCCTGACCGTGGGAGTGACTGTGACTATCTGGAAGAGAGGCGAGTTGGTCAGGGGCAAGTCCTCCTTGCGTGTGATCACAGTGCAACAGAATCCGCTCCACATCGACGCCCTGCAGGAGGGAGCAGTGTACTGCGTCAAAGCCCAGGCCCATCTGGACACCcacagcaaaagcagcagcactGACACACAGTGTGTCTCCATCACAGGTCCTGGACCTACCTGGCTTAAGCCCACAACAGTGACTGTTATCGTGGTGATATTAGCCGGCCTGGTGTTTTGTCTCTCTTGGTCAGTAACCCACTGTAGGCCAGAGGCCTGCTACGCCTATTTCCGCAAGGAGCCACAGCCCACTGCACTGGTGAGTCCTGCAATGATTGGTcattatcgctctctctctctgcccgtgCAAGGCATTGTTGAGCATGAGTCCAGTGCCTGTAGACATATTGTAAAC

Function

NR:

description
interleukin-20 receptor subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612641.2 False 2657 mRNA 0.44 7 46309732 46325685
XM_036985500.1 False 2570 mRNA 0.44 7 46309732 46325685
TU811283 True 1421 TUCP 0.50 6 46311130 46325681

Neighbor

gene id symbol gene type direction distance location
tmeff1a tmeff1 coding downstream 68295 46163653 ~ 46241437 (-)
cavin4a LOC106568643 coding downstream 175744 46122744 ~ 46133988 (-)
ift57 ift57 coding downstream 235686 46061743 ~ 46074046 (-)
tmem71 tmem71 coding downstream 276732 46006411 ~ 46033000 (-)
amph amph coding downstream 385002 45793248 ~ 45924730 (-)
LOC110529956 LOC106568794 coding upstream 63257 46388942 ~ 46395118 (-)
dusp28 LOC106568652 coding upstream 82048 46407733 ~ 46417579 (-)
sft2d3 sft2d3 coding upstream 136940 46462625 ~ 46463692 (-)
si:ch1073-184j22.1 LOC106568655 coding upstream 201965 46527650 ~ 46556891 (-)
pex5lb LOC106568657 coding upstream 326143 46651828 ~ 46803169 (-)
G713667 NA non-coding downstream 36960 46264380 ~ 46272772 (-)
G713293 NA non-coding downstream 63303 46246065 ~ 46246429 (-)
G713287 NA non-coding downstream 67675 46241856 ~ 46242057 (-)
G713211 NA non-coding downstream 172794 46136731 ~ 46136938 (-)
G713202 NA non-coding downstream 188001 46121282 ~ 46121731 (-)
G713694 NA non-coding upstream 28974 46354659 ~ 46424529 (-)
G713736 NA non-coding upstream 39740 46365425 ~ 46376646 (-)
G713738 NA non-coding upstream 55881 46381566 ~ 46387729 (-)
G713742 proc non-coding upstream 73331 46399016 ~ 46406912 (-)
G713766 NA non-coding upstream 135005 46460690 ~ 46462111 (-)
G712814 NA other downstream 851484 45457777 ~ 45458248 (-)
G711133 NA other downstream 1770228 44538793 ~ 44539504 (-)
G709454 NA other downstream 3138650 43170760 ~ 43171082 (-)
G709272 NA other downstream 3589033 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 6350119 39956961 ~ 40017167 (-)
LOC110529973 LOC106568664 other upstream 725782 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 852739 47178424 ~ 47178736 (-)
G715865 NA other upstream 1963257 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 2216606 48356004 ~ 48616588 (-)
G716463 LOC106591423 other upstream 2434227 48759912 ~ 48761163 (-)

Expression


Co-expression Network