XLOC_025793


Basic Information

Item Value
gene id XLOC_025793
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56358682 ~ 56360650 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052385
ctttgctgtaattaacgtataaagggagaaaatcgtctgcacagtcagtatgacaacagccacagagatctgacctgctcatcatccagtctttctggaatgacatgaagaaactaaatccataggaactttggcaacatttctaagatgtgcaaagtaaacgacagtaaacattggtaaatattcgctgctggccgtttagattcggccatgaactaacgttaatgttacgctaaaaacaaatgaaacaaaataaatataatctggttaatgcacaatttctaatcgtaacaatagccttatttactgacaacgatttactcacatgtgttacatggtgacaagacggagcaattccaaacgtcccaaaagtctgagcaaaacctcgtggcgtgctgctgcagtttgattcggatctttagaggcttcttgattcacaactcgtttgaatcaacgaatcagtaggcgcgtacctgaagtgatacaatatcgcgagatggattcaaatgcacacggagctgtctgttgttctcgcgatgttttgatgtcacactgatcggtttgttgaagacgaatcgattcaactctccgtcctccattcccagaatttcctgttcacggcagtacaaggacggcagcgcgagagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaaagggggaaggaaataatgtgttattttgctgtttgagtataggcaggcgcagtgggtagcacaatcgtctcacagctagaaggtcgttggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacattgggtaaggtaaaattgtccgtagtgtatgtgtgtgaatgagtatgtatggatgtttcccagcacagcaaattttagatagtagatttaactaccttggagttaaaattaacactgcctcagagttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052385 True 1078 lncRNA 0.44 2 56358682 56360650

Neighbor

gene id symbol gene type direction distance location
XLOC_025792 prkcab coding upstream 16563 56163276 ~ 56342119 (+)
XLOC_025791 FP326652.1 coding upstream 250773 56099256 ~ 56107909 (+)
XLOC_025790 NA coding upstream 704418 55646873 ~ 55654264 (+)
XLOC_025789 NA coding upstream 870441 55482120 ~ 55488241 (+)
XLOC_025788 NA coding upstream 971025 55386215 ~ 55387657 (+)
XLOC_025794 cacng5b coding downstream 5745 56366395 ~ 56394018 (+)
XLOC_025795 rac1b coding downstream 213973 56574623 ~ 56594285 (+)
XLOC_025796 CU019632.1 coding downstream 258545 56619195 ~ 56622872 (+)
XLOC_025797 CR759836.1 coding downstream 285060 56645710 ~ 56685946 (+)
XLOC_025798 rnf213a coding downstream 338537 56699187 ~ 56813923 (+)
XLOC_025429 BX649540.1 misc upstream 26109646 30248739 ~ 30249036 (+)
XLOC_025787 CT583658.1 non-coding upstream 1059524 55299043 ~ 55299158 (+)
XLOC_025799 NA non-coding downstream 461049 56821699 ~ 56822203 (+)
XLOC_025802 NA non-coding downstream 589305 56949955 ~ 56957558 (+)
XLOC_025806 NA non-coding downstream 1065510 57426160 ~ 57480996 (+)
XLOC_025807 NA non-coding downstream 1073611 57434261 ~ 57436304 (+)

Expression


Co-expression Network