cldn15la (LOC106568649)


Basic Information

Item Value
gene id cldn15la
gene name LOC106568649
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46352786 ~ 46356523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612642.2
GGACCTGAGATATAGGAAGCACAACGAACAAATAGAGACACTAGCTAACATCCACCCCACACATCACCTTCTGTCCTCTGTGCATACATTGGAAAATTTTAAAAGGTTGTTTTTGGGGTTGTTTTTAGGTCATACCCTGTCTGTAGTGTCGTTTTTTGCGTCATTAcatttttctgggatttttttaacCTATTTGGCCCTGTAGTTCTGTATTTTCTCTGTATTTTGGGAATCCTTTCCATCTCGTGTGTTGTGAAAGGTTTCGACCATGTCAACCGCTGTGGAGGCAACCGGATTCTTCATGTGTATCGCCGGCTGGCTGATCACTGGTACGGCTCTCGCCAACGACTACTGGAAGGTGTCCTCCGTCTCTGGCAGTGTTATCATCTCCACCCGACAGTATGAGAACCTGTGGCACTCCTGTGCCGAAGACAGCTCTGGAATCGCTGAGTGCCGCGACTTCGAGTCCCTGCTAGGCCTCCCCGGCCATGTACAGGCGAGCCGTGCCCTGATGGTCATCAGTCTGCTCTTAGGGCTGGTGTCTATGATCGTGTCTCTGCTGGGGCTAAAGTGCATTAAGATTGGCAGTGCCACGGAGCAGGCAAAGGCCAAGATTGCCGTCACTGGTGGATGCCTCTTTATACTCGCTGGTCTCTGCGAGCTGATCTGCTGTTCTTGGTACGCCACCCGAGTTGTAGAGGACTTTAACAACCCATTCTTTGGTGGGGTGAAGTTTGAGTTGGGGACTGGTCTCTTCCTGGGCTGGGGCGCAGCCTCTCTGTCCATGCTGGGAGGATCTCTTCTCTGCTGTGCCTGCAAGAGGGCAAAAAGTGAAAAGCCTAAAGCAGGGTACTACGCAACGAGTCAGCCTAAAACAATCTACGCACCTGCTGCCAGGTCTGAGCCGGATTCCACCAAAGCCTACGTCTAAGACGTCCCTCCCGTACcacctcacctcccctctcccacTTTTGTGACGCTCACATTTAAGAGCACATATTTGACTGTTGTTACCCATGTTTATCTTTTTCTCTTTCACCATGAATTTTGCTAATTGTTTTTGAAGGATTTTGAGGTTgatgcaacaaacaaaaaaacttgAATAATTTGGAGTTTAACTATTGGTAATGGGATCTGTTTGTGTGGAATTTGCTATCCTCTGAATAAACATTCATTTGATATATG

Function

NR:

description
claudin-15-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612642.2 True 1185 mRNA 0.48 5 46352786 46356523

Neighbor

gene id symbol gene type direction distance location
slc39a6 slc39a6 coding upstream 58922 46264640 ~ 46293864 (+)
LOC110529944 LOC106568640 coding upstream 343798 46003081 ~ 46008988 (+)
LOC110529945 LOC106568641 coding upstream 377778 45964664 ~ 45975008 (+)
stard3nl stard3nl coding upstream 592547 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 644274 45692358 ~ 45708512 (+)
saga LOC106568650 coding downstream 6122 46362645 ~ 46376820 (+)
LOC110529955 NA coding downstream 21916 46378439 ~ 46384254 (+)
proca proc coding downstream 42496 46399019 ~ 46406905 (+)
wdr33 wdr33 coding downstream 63397 46419920 ~ 46462126 (+)
si:ch1073-184j22.2 LOC106568795 coding downstream 153579 46510102 ~ 46513158 (+)
G713292 NA non-coding upstream 106382 46246079 ~ 46246404 (+)
G712121 NA non-coding upstream 208764 46142739 ~ 46144022 (+)
G712061 LOC106568643 non-coding upstream 226548 46122767 ~ 46126238 (+)
G712079 NA non-coding upstream 298776 46053799 ~ 46054010 (+)
G712074 NA non-coding upstream 302306 46050136 ~ 46050480 (+)
G713366 sft2d3 non-coding downstream 106104 46462627 ~ 46463602 (+)
G713371 NA non-coding downstream 107319 46463842 ~ 46464558 (+)
G713404 NA non-coding downstream 108238 46464761 ~ 46465289 (+)
G713406 NA non-coding downstream 109770 46466293 ~ 46466733 (+)
G713368 NA non-coding downstream 111039 46467562 ~ 46468660 (+)
G711912 NA other upstream 558237 45793269 ~ 45794549 (+)
G711845 NA other upstream 705409 45646857 ~ 45647377 (+)
G711021 NA other upstream 1903813 44448584 ~ 44448973 (+)
G709490 NA other upstream 3155144 43196560 ~ 43197642 (+)
G708448 NA other upstream 4968603 41380025 ~ 41384183 (+)
G713405 NA other downstream 108875 46465398 ~ 46466227 (+)
G713574 NA other downstream 359392 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2181220 48537743 ~ 48544164 (+)
G716133 NA other downstream 2403820 48760343 ~ 48760740 (+)
G716862 NA other downstream 2976318 49332841 ~ 49333772 (+)

Expression


Co-expression Network