saga (LOC106568650)


Basic Information

Item Value
gene id saga
gene name LOC106568650
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46362645 ~ 46376820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612644.2
TTGTCTCCTGCTCTAGCAACAcagATCTCATACTCATAGATTTTCCAGTTTGCCACCATGAGTCCCAAGAACGTAATCTTCAAGAAGATGGCCAAGGACAAgtcgGTTGGAGTATACATGGCGAAGAGGGACTTTGTGGATCGTGTGGACTCTGTCGAGCCAGTGGATGGTGTCATACTGGTTGACCCTGAGGTCCTCAAAGGAAAAAAAGCGTTCGTCCAGCTGTCCTGCACGTTCCGGTACGGTCGTGAAGATATGGACGTGATGGGAATTGCCTTCCGTAGGGAGATCTACATAGCCATCCGTCAGGTGTATCCGCCCATACAGGACAGGGAGCAGTCCACACACACCAAGATGCAGGGCAAACTGCTGCGCAAACTGGGAGACAATGCCTTCCCTTTCTTTTTCGAGttcCCTGATaacctgccttgttcagtgggTTTGCAGCCTGGCCCTAATGATTCTGGGAAGCAATGTGTCGTGGAGTTTGAGGTCAAAGCCTTCAGTGCGGAGAGCCAGGAGGCCAAAGTCCGCAAACGGAGTACCGTGCATCTGATGATCCGGAAGCTGCAGTATGCCCCGGAGAATAGCGGGACGGCCCCCTCTGTGAAGACCACCCGTGAGTTTGTCATGTCCGACAAGCCCCTGCACCTGGAGGCGAGTCTTGACAAGGAGATCTACTACCATGGAGAGCCCATTAATGTGTGTGTCAACGTCACAAACAGCTCCAACAAGAATGTGAAGAACATCATTGTCTCTGTGGACCAGGTGGCCACTGTGGTGTTGTATTCCAATGACAGCTACGTGAGGGCAGTGGCCTTAGAGGAATCTGGGGATGCTGTTGCTGCTGGTGCAAGCCTGAAGAAAGTGTACTCCCTCACTCCCCTATTGGTCTGCAACCGGGAGAGGCGGGGCATAGCTCTTGATGGCAAGTTGAAGCATGAAGACACTAATCTGGCATCGTCTAGCATTGTTAAAGAAGGTGTGCTGAAGGAGGTTCTAGGAATCCTGGTGTCATACAGAGTCATGGTTAAGCTCATCATTGGCGGAATATTGGGATCTAGtgaggtgggagtagagctGCCACTCACACTGATGCACCCAAAACCTGACCTAGTGAGGGAAAGCGAGCTGGAAGAGGAGATGGTGTTTGAGGAGTTCAAGCGCTCCTACATGAAGGGGATGGCCGACGATGAAGAGGAGGGCAACGTGTCTACAGGAGACGCCGCTTCCTGAGCAGGGCCCCTCGTCGCTGGCCAGGCAGCCTCTGTCACAGCACCCCTTGTGGTTGCCTCCAGTACTCCATGCAACGAGAATGGAAAACGGGGATAGTATTGAGTAAAAAGTATAACGATAGCAGTCAAAACAATTGTGGTTAGGTGTTTGAGTCACCCTTAGAGGTAGTTTAGAACATTGCTGGTGGATAATTTATAGTTTATTCACAGCTTAGGGGGTCTGTATTTCAGCCTCACCATCAGTAGACTCTTTCAGCTTTGTAATCGGCAGGATTTCACTCACTGTCTTATGGTCACCGTGAGCACTGGGTAATGTAACATCCATCCCTGTCTTTAATAAAGAGTTTGGCAGCCATGTTGTGAGGTGAATGGTGGCCATTTTGAGTCATGTAAAAGATGCTCTGTTACATTGACTATTATTAGCGTTATCTAGTAGATAAAAGTGTAGTGCACTAGATAACTGGACATATATTTGTGCTTGCAGTGAAGACCAACTGTCTTGTACTTGCGTTATGGTATTAAAAGCTAGAGATGTTCTCACAAAA

Function

NR:

description
S-arrestin-like

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612644.2 True 1780 mRNA 0.49 16 46362645 46376820

Neighbor

gene id symbol gene type direction distance location
cldn15la LOC106568649 coding upstream 6122 46352786 ~ 46356523 (+)
slc39a6 slc39a6 coding upstream 68781 46264640 ~ 46293864 (+)
LOC110529944 LOC106568640 coding upstream 353657 46003081 ~ 46008988 (+)
LOC110529945 LOC106568641 coding upstream 387637 45964664 ~ 45975008 (+)
stard3nl stard3nl coding upstream 602406 45725701 ~ 45760239 (+)
LOC110529955 NA coding downstream 1619 46378439 ~ 46384254 (+)
proca proc coding downstream 22199 46399019 ~ 46406905 (+)
wdr33 wdr33 coding downstream 43100 46419920 ~ 46462126 (+)
si:ch1073-184j22.2 LOC106568795 coding downstream 133282 46510102 ~ 46513158 (+)
mfn1a LOC106568656 coding downstream 217583 46594403 ~ 46619166 (+)
G713292 NA non-coding upstream 116241 46246079 ~ 46246404 (+)
G712121 NA non-coding upstream 218623 46142739 ~ 46144022 (+)
G712061 LOC106568643 non-coding upstream 236407 46122767 ~ 46126238 (+)
G712079 NA non-coding upstream 308635 46053799 ~ 46054010 (+)
G712074 NA non-coding upstream 312165 46050136 ~ 46050480 (+)
G713366 sft2d3 non-coding downstream 85807 46462627 ~ 46463602 (+)
G713371 NA non-coding downstream 87022 46463842 ~ 46464558 (+)
G713404 NA non-coding downstream 87941 46464761 ~ 46465289 (+)
G713406 NA non-coding downstream 89473 46466293 ~ 46466733 (+)
G713368 NA non-coding downstream 90742 46467562 ~ 46468660 (+)
G711912 NA other upstream 568096 45793269 ~ 45794549 (+)
G711845 NA other upstream 715268 45646857 ~ 45647377 (+)
G711021 NA other upstream 1913672 44448584 ~ 44448973 (+)
G709490 NA other upstream 3165003 43196560 ~ 43197642 (+)
G708448 NA other upstream 4978462 41380025 ~ 41384183 (+)
G713405 NA other downstream 88578 46465398 ~ 46466227 (+)
G713574 NA other downstream 339095 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2160923 48537743 ~ 48544164 (+)
G716133 NA other downstream 2383523 48760343 ~ 48760740 (+)
G716862 NA other downstream 2956021 49332841 ~ 49333772 (+)

Expression


Co-expression Network