LOC110529956 (LOC106568794)


Basic Information

Item Value
gene id LOC110529956
gene name LOC106568794
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46388942 ~ 46395118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985501.1
TTAAACAAGACTTTAAACAAGACTTCAACATATGCCAAGACCATGTCACCCTTCTCGTACTTTAAACAAGACTTCAACATATGCTTCCTCAATAAAAGTGTGTCAATACAATATTTTATCATATTGGGGGATATTGGAAAATATTACAGACATACCAATGTCTTTGAGCAAGTCCTGGatataaaataattattatacaAGAGACTCCACACACTGCAATCGCTCCAATGTGGTTTATCAGAGCCTGTATTCATAAAGAATCTCAAGGTATGAGTGCTGATCTCGGATATGGTCACCCCCTGTCAATccaatctgattcattatgatctaaaaggctaaacagATCCTAGGTGAGTTATTCTACTCTGAGATtctttatgaatatgggcccagGTCTATATTGGGGGGTCCTGACATTTCCTGTTAAGGGCCTACAGCAGTCCAGTCCATAAACAGACACGAGCTGAAATAGGCCAGTGGAGCCGCTTGTGTCTCTGGAGTGCTGGTTACAACAGACCCAGCTGTCTGAAATAGATCTGCTTTCTGTCTGAGCTCCTTATCTCTCCATCAACACCTTCTCTGAAAcctggtagaggtggagagagagaggcagagaatgagagggaaagggagatggggagataGTGGAAAAGGGGAAGAAAGTAGAGGTgatagaaaaggagagagagaagagagagaggaagactgaCATTAAGGGAGAGAAGTGAGAGGTGAGAGGAAAAGGGAAGAGATAGCAAGGTGGAGGGAGTCATGGGACAAGGAATAGGGTGGAATATACTGTAGCAACACGGGTGacgcctctctctcactttttttacccatctattgtttttattataATTCTGTGGACCATGCTGTCGATCGCTAATGAGGTCATCTTACAGGTAGAAGCCCTAGTTACTCTGTCCACAGCACAATGAagtatctcttcctcctcccaccctccattcctccctcctatCCTTTGTCTGCAGGTCTAGAGGGTGCGAGGTGGACCCAAAGAAGTGTTGTTTTGTGCAAGGCCTATATATTGATCAATGCTTCTGTCCTGCTCATCATTCCACCAGCATCTCTCATCCTGCACATGATGACACAAGACTCCAAAGGAATGGTGAGTGCAACTCTTTAAATTGTGAGTGGGTTCTTTGgggcttttcacactactgagcagAACTGAGCTGAGCCAAACCAAGTTGTACTGAGTTGGCCTAGTTGTATACATCTACCACAGTTGCTGGAACTTTGCTGAAAAGGACCATGTAAAAATGAAAGAGTCAGCACAGTTTGGTTTGAAATGTAAAGGTAGTGTGAAAAGGATATCTGTGGTGGTTGAAAACCCGCACGGAGCACTCACTGGTAACAGTCTTTTGAAAAATGGAAAACTTCAAAAGACCAGTGAGTCAAGGCTGTTGGTTAGGACCGTTGATCGTTTGGGCTGTTCTTGTACGAGTATTGACCAATGGGATTGGTGAGTCGTGAATGATGGATGAGTGGTACAATTGATGTGTTGATAAGTGTTTTGGTGATTGATGTGTTATTGGTTGGTAGGGATTGCGTGGTCCTATAGTAAGAAGCAAATTTGTTTTGTTGCATTATCTGTAGTAGATGATAGTCTTCATGGTGAACTTTAATAAATTGGTTAGACATTAGTGTGCAGTGATTGGTAAGGGATTGGTGGATAATTCTCAGGAAACAAGTACATTAGTCACTAATCACTATTATAACTTTGCGATAAACAAAATTAAGTATGTTATAGGTTAACTGaaaacatcccactgggcacaccacataATTTCAGCATGGAgatttgggtaatatttggttgagacgttgatcaatgagatttcatGCTTTATTCACACAAAAGACAGccagaagtttgttgaattcGAATGTTTTaccactatgctttcaaccatcttaAAGCACATCCAAATTTCTATGGAAAAACCATGTCTGATTGGTCATCGAAATGTGTTGTCATTGCggtttcaaccatttaaaaacacaacaaagttcaaatgggaatacaatgtcagatagaTTTACAACAACTTAACGTGTTATCACCATGCTTCATttaatagcacaaccaaatgacctggattgcagttgagattacatcaATGCTGTTCAAGATTCTCAATAGATTACTttagcaattgtgaagatctccacagacctgtgacctttgcatgctatcttgaacatgcacgctttctaggattacataagaagacatttATAGTAATCTTAAAATGTGGCCATGGGTGTGTtgctcattttaaggttgaataaatactgtcACATTAATTTGTAAGATAGTTTTAACTAAAGTGATTTTGAATTGTTGTCAACGCAAcctaatatcaacatttgaaggagatgtaccTTTTGTGCCCCTGACCTAGTCTGGTCTTTTCAAGTTTGTCTACAGatgaataattgatatgttggatacatgtctccatctcaaccataAATCTAAATTAAAGAATAGTACTGAATTAGATTTTTGgctgagatagagacatgactcCAACATATAAATTAtgaatttgtagacaaactggaattaaagccaggcTAAGTCTGAGGCACAGATGGACATTTCCAAGTAGaatatacatctccttcaaatgttgatattcggctgcattgacaaccaaacacaattcaatatccagtttgtctacaaattcataattgatatgttggagtGGCTACTGACTGGCACAAGTTTTGCCCGAAAAACAATTCTCATCCTAAATGATATCACAAAATGCTTAATGATATGACGTGATTATTGTTTGGATCCCCACCGACCATTCCAAACATTTGGATTCCAAAACTAATATTccaatgtccaatcaattgatgtTAAGGTTTTTAGCAAGAGTCTCTCTTCTGTAACACTCAGACATTCCATTCTCAATACGGCAAAGTCAAATAGAGAAAGTTAACGACCGGCGTTAAGTCATAAAACCGTCCGAGAGTCACGACAATGTCTCCAGCTCAATCAAAATCAAAAGTTCAAGAATATaggacaaaatcaaatcaaactttaaatgcactttaaaataaagtttgatttagtcctattcttgaaCTATTTTTGAGATCTCTCAGTAATCATTCTCATGATACAACATCTgtagtagtcagtgacaaatatcgaAGCTGGGATTGGTTAAAATCCTGGATGAGAGACCAAATGGATAGCTCTAGATAGATCAGCTTTCCAGTAGGAGATGCTGCCCAGCCTATTGTTTTTTTCTTCTGAtataacgttgaagatctgacgttgtttcaaaggtacaagttcaacatattttatacaaggtttgtctatgttgaaaattggttaccatgatgacaaaATCCTGTGGTTGAAGTTTCACCCTCAAAAAAACAGTTTACGTTAaggacttttttcaaatccaatgtattttccacgtagaTGCCATGTCACAAATtatgttgaaacaatgttgatttaaccagtttgtgcccGATGAGATACCACTGTATTTTTCTTCCCATTTTGTAGCAAAAATAAGTTTTGGGTCATTGTTTGAAGAACTGAAATTGATTAAGTAGTTCTCTTGAATGATTATCATATTAGACAAAAATCATGAAAACAACTGGacatctgtttctctctttctctctctctctctctctctctttctctccctccctctctctctctctgtctctctctctctctgtctctctctcagactaCCAGTCTGCTGGGACTGCTCCTATGCACCACCATCTCCTCTGCGATGCATACTTCACCCACAGGGGGATACAACGAGATGCCCCCTCTCCCGTTCACAGGCTCCCAAGACAGTCCCATCCCCCCTACGGACCTCCACATGTACCCAATGCGATCTGACTACCCTATGCCCACCAACAACCAGAACATGAATGCCCGCAGCGGTCCAATGCCCCCCTCCGACTACCCCAATCCTGGCTTCCCCATGCCACCAAGCACTCACATGAACATGACTGGGAACTGGCGAACTGGGGAACTGCTGGTAGTTGAGGCCGGGTCGGAGCCGGACATGTCGTACTGCCAGACACTTCTGGATGTGCCAGTGCCGCCCCCCATGGACCAGGTGCCCTGGTTCTGTGTCTGCTCCCGCTGCAAGGCCAGCGTGGGACCCaaaggggacagaggagacaggGGCCTGCCAGGTATGTAGAAAGGCATAGAATagtatacatttttatttcacctttattttaccaggtagttCCATTAGAAGTAGAAAAAGAGATGTACACTCTCTTAAAATTGTTCATCAGAAATGGATCAAAAACATGTCGTTTTTTCACCCTAATTAGTAGTGTGGACCTTTTCTTTTGGTGTGTAGATGGTGTGTATTTTAGGTCTACACACCATCTAAACTTACTAAACAAATGATATAACTAGCTGCATCCACAGTCTTTGCCTcattctctgttctctttctgccACTCTCAAGCATAGAAATAATATATTAAATACAGTATGTTAGCTAGCCACATATTGTTTACGTCATTGTTCTTAACCCACAAAGGTATTCCAGGAAGTCCTGGTAGAAGAGGACTCACAGGGTTCAGAGGTCGGCCTGGGTTCGTGGGCCGCCAAGGACTGAAGGGTCAGAAGGGTGATGAAAATGAGAAGGGAGAACGTGGGCTAGTGGGTTTCACCGGCACCAAGGGGGCCCGCGGCTTCAAAGGGGACAAAGGGGACCAGGGTCTGGAGGGTGCACAGGGAGAGATGGGGCCCCAGGGAGCGGAAGGGACCTGTCCTGCGTCCTGTGAAAGTGTTCAGGGCCGTGCAGGACAACCAGGGATACCCGGACCGGCTGGGGCCAGGGGTCTCCCCGGAGTAGCAGGCCCTCCAGGGACTACGGGGACCAAGGGTGAAACAGGGCACATGGGTTCCCCTGGGGTCCCCGGAACGAATGGTGAGAAAGGTGAACTGGGGGCGAAGGGCGAGTGCAACTGCACTAATGGAGCAGACGGGGCAGACGGTCAACAAGGGATCCGTGGGCCCAAGGGAGAGCAAGGTGAGTTGGGCCCTAAGGGTGCTGTGGGTCTCAACGGTAAAAAGGGAGACCAGGGTGACCTCGGTATGACGGGCATTCCCGGGCCATGCTCTCCAgccatccagtcctcattcaccgCCGCACTCGGCACAATTTACCCGCTACCGGACAAGCCCGTGCCGTTCACCGAAGTCATCACCAACCAGCAGTTTCATTTCGACCCCATCACAGGCATCTACAGGGCACCAGTGAACGGCACCTATGTCTTCAGCTACCACCTGATGGTGTTCAACAAGGTGCTGAAGGTGGGTCTGTTCCATAATTTCAACTCTATCGTGAAGACCACGGAGCCAGCCCAACTGGGCACTGCTAGCCACCAGGTGGTGCTCCACCTGGTCATGGGCGACCGGGTGTGGCTGCAGGTGAAGGACAACATCACCAACGGCATGTATGCTGACAATGAGAGCAGAAGCACCTTCTCTGGCTTCCTGCTCTACCCCGACTCTTGCGACTTGCCCTTGTTCCGAGACTTTCCTCCAGCAGGCGCTCCAGGTGGGGACGAGGGGAACTATAGTTGGGGGTAGATAGAGGggccatccaccaccccatcgcCTTAGTCCGTGAGAGTCAGTTACACAGACACAGGTTACATACACATATAATTGGAAGACACacaatccacacacacatacattaacaAAGTTCTCGAAGTTAACACCAACAGAGCACCTTCTATAAATCAAAAGCCATCTACAATGGCCTGTTAGCTCTGGGCAGTTTCCTATAACATTAATGAATAAAATTTCCTACAAAACGA
>XM_036985502.1
TTAAACAAGACTTTAAACAAGACTTCAACATATGCCAAGACCATGTCACCCTTCTCGTACTTTAAACAAGACTTCAACATATGCTTCCTCAATAAAAGTGTGTCAATACAATATTTTATCATATTGGGGGATATTGGAAAATATTACAGACATACCAATGTCTTTGAGCAAGTCCTGGatataaaataattattatacaAGAGACTCCACACACTGCAATCGCTCCAATGTGGTTTATCAGAGCCTGTATTCATAAAGAATCTCAAGGTATGAGTGCTGATCTCGGATATGGTCACCCCCTGTCAATccaatctgattcattatgatctaaaaggctaaacagATCCTAGGTGAGTTATTCTACTCTGAGATtctttatgaatatgggcccagGTCTATATTGGGGGGTCCTGACATTTCCTGTTAAGGGCCTACAGCAGTCCAGTCCATAAACAGACACGAGCTGAAATAGGCCAGTGGAGCCGCTTGTGTCTCTGGAGTGCTGGTTACAACAGACCCAGCTGTCTGAAATAGATCTGCTTTCTGTCTGAGCTCCTTATCTCTCCATCAACACCTTCTCTGAAAcctggtagaggtggagagagagaggcagagaatgagagggaaagggagatggggagataGTGGAAAAGGGGAAGAAAGTAGAGGTgatagaaaaggagagagagaagagagagaggaagactgaCATTAAGGGAGAGAAGTGAGAGGTGAGAGGAAAAGGGAAGAGATAGCAAGGTGGAGGGAGTCATGGGACAAGGAATAGGGTGGAATATACTGTAGCAACACGGGTGacgcctctctctcactttttttacccatctattgtttttattataATTCTGTGGACCATGCTGTCGATCGCTAATGAGGTCATCTTACAGGTAGAAGCCCTAGTTACTCTGTCCACAGCACAATGAagtatctcttcctcctcccaccctccattcctccctcctatCCTTTGTCTGCAGGTCTAGAGGGTGCGAGGTGGACCCAAAGAAGTGTTGTTTTGTGCAAGGCCTATATATTGATCAATGCTTCTGTCCTGCTCATCATTCCACCAGCATCTCTCATCCTGCACATGATGACACAAGACTCCAAAGGAATGactaCCAGTCTGCTGGGACTGCTCCTATGCACCACCATCTCCTCTGCGATGCATACTTCACCCACAGGGGGATACAACGAGATGCCCCCTCTCCCGTTCACAGGCTCCCAAGACAGTCCCATCCCCCCTACGGACCTCCACATGTACCCAATGCGATCTGACTACCCTATGCCCACCAACAACCAGAACATGAATGCCCGCAGCGGTCCAATGCCCCCCTCCGACTACCCCAATCCTGGCTTCCCCATGCCACCAAGCACTCACATGAACATGACTGGGAACTGGCGAACTGGGGAACTGCTGGTAGTTGAGGCCGGGTCGGAGCCGGACATGTCGTACTGCCAGACACTTCTGGATGTGCCAGTGCCGCCCCCCATGGACCAGGTGCCCTGGTTCTGTGTCTGCTCCCGCTGCAAGGCCAGCGTGGGACCCaaaggggacagaggagacaggGGCCTGCCAGGTATGTAGAAAGGCATAGAATagtatacatttttatttcacctttattttaccaggtagttCCATTAGAAGTAGAAAAAGAGATGTACACTCTCTTAAAATTGTTCATCAGAAATGGATCAAAAACATGTCGTTTTTTCACCCTAATTAGTAGTGTGGACCTTTTCTTTTGGTGTGTAGATGGTGTGTATTTTAGGTCTACACACCATCTAAACTTACTAAACAAATGATATAACTAGCTGCATCCACAGTCTTTGCCTcattctctgttctctttctgccACTCTCAAGCATAGAAATAATATATTAAATACAGTATGTTAGCTAGCCACATATTGTTTACGTCATTGTTCTTAACCCACAAAGGTATTCCAGGAAGTCCTGGTAGAAGAGGACTCACAGGGTTCAGAGGTCGGCCTGGGTTCGTGGGCCGCCAAGGACTGAAGGGTCAGAAGGGTGATGAAAATGAGAAGGGAGAACGTGGGCTAGTGGGTTTCACCGGCACCAAGGGGGCCCGCGGCTTCAAAGGGGACAAAGGGGACCAGGGTCTGGAGGGTGCACAGGGAGAGATGGGGCCCCAGGGAGCGGAAGGGACCTGTCCTGCGTCCTGTGAAAGTGTTCAGGGCCGTGCAGGACAACCAGGGATACCCGGACCGGCTGGGGCCAGGGGTCTCCCCGGAGTAGCAGGCCCTCCAGGGACTACGGGGACCAAGGGTGAAACAGGGCACATGGGTTCCCCTGGGGTCCCCGGAACGAATGGTGAGAAAGGTGAACTGGGGGCGAAGGGCGAGTGCAACTGCACTAATGGAGCAGACGGGGCAGACGGTCAACAAGGGATCCGTGGGCCCAAGGGAGAGCAAGGTGAGTTGGGCCCTAAGGGTGCTGTGGGTCTCAACGGTAAAAAGGGAGACCAGGGTGACCTCGGTATGACGGGCATTCCCGGGCCATGCTCTCCAgccatccagtcctcattcaccgCCGCACTCGGCACAATTTACCCGCTACCGGACAAGCCCGTGCCGTTCACCGAAGTCATCACCAACCAGCAGTTTCATTTCGACCCCATCACAGGCATCTACAGGGCACCAGTGAACGGCACCTATGTCTTCAGCTACCACCTGATGGTGTTCAACAAGGTGCTGAAGGTGGGTCTGTTCCATAATTTCAACTCTATCGTGAAGACCACGGAGCCAGCCCAACTGGGCACTGCTAGCCACCAGGTGGTGCTCCACCTGGTCATGGGCGACCGGGTGTGGCTGCAGGTGAAGGACAACATCACCAACGGCATGTATGCTGACAATGAGAGCAGAAGCACCTTCTCTGGCTTCCTGCTCTACCCCGACTCTTGCGACTTGCCCTTGTTCCGAGACTTTCCTCCAGCAGGCGCTCCAGGTGGGGACGAGGGGAACTATAGTTGGGGGTAGATAGAGGggccatccaccaccccatcgcCTTAGTCCGTGAGAGTCAGTTACACAGACACAGGTTACATACACATATAATTGGAAGACACacaatccacacacacatacattaacaAAGTTCTCGAAGTTAACACCAACAGAGCACCTTCTATAAATCAAAAGCCATCTACAATGGCCTGTTAGCTCTGGGCAGTTTCCTATAACATTAATGAATAAAATTTCCTACAAAACGA

Function

NR:

description
inner ear-specific collagen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985501.1 False 5883 mRNA 0.44 3 46388942 46395118
XM_036985502.1 True 3251 mRNA 0.50 4 46388942 46395118

Neighbor

gene id symbol gene type direction distance location
crfb16 LOC106568648 coding downstream 63257 46309732 ~ 46325685 (-)
tmeff1a tmeff1 coding downstream 147505 46163653 ~ 46241437 (-)
cavin4a LOC106568643 coding downstream 254954 46122744 ~ 46133988 (-)
ift57 ift57 coding downstream 314896 46061743 ~ 46074046 (-)
tmem71 tmem71 coding downstream 355942 46006411 ~ 46033000 (-)
dusp28 LOC106568652 coding upstream 12615 46407733 ~ 46417579 (-)
sft2d3 sft2d3 coding upstream 67507 46462625 ~ 46463692 (-)
si:ch1073-184j22.1 LOC106568655 coding upstream 132532 46527650 ~ 46556891 (-)
pex5lb LOC106568657 coding upstream 256710 46651828 ~ 46803169 (-)
nebl LOC106568663 coding upstream 620767 47015885 ~ 47027075 (-)
G713738 NA non-coding downstream 1213 46381566 ~ 46387729 (-)
G713736 NA non-coding downstream 12296 46365425 ~ 46376646 (-)
G713660 NA non-coding downstream 49898 46254476 ~ 46339044 (-)
G713667 NA non-coding downstream 116170 46264380 ~ 46272772 (-)
G713293 NA non-coding downstream 142513 46246065 ~ 46246429 (-)
G713742 proc non-coding upstream 3898 46399016 ~ 46406912 (-)
G713766 NA non-coding upstream 65572 46460690 ~ 46462111 (-)
G713771 NA non-coding upstream 68866 46463984 ~ 46464406 (-)
G713772 NA non-coding upstream 69650 46464768 ~ 46465308 (-)
G713773 NA non-coding upstream 70504 46465622 ~ 46466193 (-)
G712814 NA other downstream 930694 45457777 ~ 45458248 (-)
G711133 NA other downstream 1849438 44538793 ~ 44539504 (-)
G709454 NA other downstream 3217860 43170760 ~ 43171082 (-)
G709272 NA other downstream 3668243 42719771 ~ 42720699 (-)
LOC110529973 LOC106568664 other upstream 656349 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 783306 47178424 ~ 47178736 (-)
G715865 NA other upstream 1893824 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 2147173 48356004 ~ 48616588 (-)
G716463 LOC106591423 other upstream 2364794 48759912 ~ 48761163 (-)

Expression


Co-expression Network