Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529956 |
| gene name | LOC106568794 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 46388942 ~ 46395118 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| inner ear-specific collagen-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036985501.1 | False | 5883 | mRNA | 0.44 | 3 | 46388942 | 46395118 |
| XM_036985502.1 | True | 3251 | mRNA | 0.50 | 4 | 46388942 | 46395118 |
46,380,000
46,381,000
46,382,000
46,383,000
46,384,000
46,385,000
46,386,000
46,387,000
46,388,000
46,389,000
46,390,000
46,391,000
46,392,000
46,393,000
46,394,000
46,395,000
46,396,000
46,397,000
NC_048572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| crfb16 | LOC106568648 | coding | downstream | 63257 | 46309732 ~ 46325685 (-) |
| tmeff1a | tmeff1 | coding | downstream | 147505 | 46163653 ~ 46241437 (-) |
| cavin4a | LOC106568643 | coding | downstream | 254954 | 46122744 ~ 46133988 (-) |
| ift57 | ift57 | coding | downstream | 314896 | 46061743 ~ 46074046 (-) |
| tmem71 | tmem71 | coding | downstream | 355942 | 46006411 ~ 46033000 (-) |
| dusp28 | LOC106568652 | coding | upstream | 12615 | 46407733 ~ 46417579 (-) |
| sft2d3 | sft2d3 | coding | upstream | 67507 | 46462625 ~ 46463692 (-) |
| si:ch1073-184j22.1 | LOC106568655 | coding | upstream | 132532 | 46527650 ~ 46556891 (-) |
| pex5lb | LOC106568657 | coding | upstream | 256710 | 46651828 ~ 46803169 (-) |
| nebl | LOC106568663 | coding | upstream | 620767 | 47015885 ~ 47027075 (-) |
| G713738 | NA | non-coding | downstream | 1213 | 46381566 ~ 46387729 (-) |
| G713736 | NA | non-coding | downstream | 12296 | 46365425 ~ 46376646 (-) |
| G713660 | NA | non-coding | downstream | 49898 | 46254476 ~ 46339044 (-) |
| G713667 | NA | non-coding | downstream | 116170 | 46264380 ~ 46272772 (-) |
| G713293 | NA | non-coding | downstream | 142513 | 46246065 ~ 46246429 (-) |
| G713742 | proc | non-coding | upstream | 3898 | 46399016 ~ 46406912 (-) |
| G713766 | NA | non-coding | upstream | 65572 | 46460690 ~ 46462111 (-) |
| G713771 | NA | non-coding | upstream | 68866 | 46463984 ~ 46464406 (-) |
| G713772 | NA | non-coding | upstream | 69650 | 46464768 ~ 46465308 (-) |
| G713773 | NA | non-coding | upstream | 70504 | 46465622 ~ 46466193 (-) |
| G712814 | NA | other | downstream | 930694 | 45457777 ~ 45458248 (-) |
| G711133 | NA | other | downstream | 1849438 | 44538793 ~ 44539504 (-) |
| G709454 | NA | other | downstream | 3217860 | 43170760 ~ 43171082 (-) |
| G709272 | NA | other | downstream | 3668243 | 42719771 ~ 42720699 (-) |
| LOC110529973 | LOC106568664 | other | upstream | 656349 | 47051073 ~ 47067973 (-) |
| G714425 | LOC106568665 | other | upstream | 783306 | 47178424 ~ 47178736 (-) |
| G715865 | NA | other | upstream | 1893824 | 48288942 ~ 48289581 (-) |
| dlg1l | LOC106568684 | other | upstream | 2147173 | 48356004 ~ 48616588 (-) |
| G716463 | LOC106591423 | other | upstream | 2364794 | 48759912 ~ 48761163 (-) |
