Gene
RNA
| Item | Value |
|---|---|
| gene id | sft2d3 |
| gene name | sft2d3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 46462625 ~ 46463692 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| sft2d3 | Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3). |
| description |
|---|
| vesicle transport protein SFT2C |
| id | name | namespace |
|---|---|---|
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612654.2 | True | 1068 | mRNA | 0.48 | 1 | 46462625 | 46463692 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dusp28 | LOC106568652 | coding | downstream | 45046 | 46407733 ~ 46417579 (-) |
| LOC110529956 | LOC106568794 | coding | downstream | 67507 | 46388942 ~ 46395118 (-) |
| crfb16 | LOC106568648 | coding | downstream | 136940 | 46309732 ~ 46325685 (-) |
| tmeff1a | tmeff1 | coding | downstream | 221188 | 46163653 ~ 46241437 (-) |
| cavin4a | LOC106568643 | coding | downstream | 328637 | 46122744 ~ 46133988 (-) |
| si:ch1073-184j22.1 | LOC106568655 | coding | upstream | 63958 | 46527650 ~ 46556891 (-) |
| pex5lb | LOC106568657 | coding | upstream | 188136 | 46651828 ~ 46803169 (-) |
| nebl | LOC106568663 | coding | upstream | 552193 | 47015885 ~ 47027075 (-) |
| dnajc1 | dnjc1 | coding | upstream | 563502 | 47027194 ~ 47035362 (-) |
| LOC110529973 | LOC106568664 | coding | upstream | 587381 | 47051073 ~ 47067973 (-) |
| G713766 | NA | non-coding | downstream | 514 | 46460690 ~ 46462111 (-) |
| G713694 | NA | non-coding | downstream | 38096 | 46354659 ~ 46424529 (-) |
| G713742 | proc | non-coding | downstream | 55713 | 46399016 ~ 46406912 (-) |
| G713738 | NA | non-coding | downstream | 74896 | 46381566 ~ 46387729 (-) |
| G713736 | NA | non-coding | downstream | 85979 | 46365425 ~ 46376646 (-) |
| G713771 | NA | non-coding | upstream | 292 | 46463984 ~ 46464406 (-) |
| G713772 | NA | non-coding | upstream | 1076 | 46464768 ~ 46465308 (-) |
| G713773 | NA | non-coding | upstream | 1930 | 46465622 ~ 46466193 (-) |
| G713774 | NA | non-coding | upstream | 2924 | 46466616 ~ 46466827 (-) |
| G713775 | NA | non-coding | upstream | 3950 | 46467642 ~ 46468423 (-) |
| G712814 | NA | other | downstream | 1004377 | 45457777 ~ 45458248 (-) |
| G711133 | NA | other | downstream | 1923121 | 44538793 ~ 44539504 (-) |
| G709454 | NA | other | downstream | 3291543 | 43170760 ~ 43171082 (-) |
| G709272 | NA | other | downstream | 3741926 | 42719771 ~ 42720699 (-) |
| G714425 | LOC106568665 | other | upstream | 714732 | 47178424 ~ 47178736 (-) |
| G715865 | NA | other | upstream | 1825250 | 48288942 ~ 48289581 (-) |
| dlg1l | LOC106568684 | other | upstream | 2078599 | 48356004 ~ 48616588 (-) |
| G716463 | LOC106591423 | other | upstream | 2296220 | 48759912 ~ 48761163 (-) |
