si:ch1073-184j22.1 (LOC106568655)


Basic Information

Item Value
gene id si:ch1073-184j22.1
gene name LOC106568655
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46527650 ~ 46556891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612657.2
GGGAAAATGattcagagagggagggaatgaaagAGACCACAAACAAAGAACGGAGACAGGGAAAGAACACAGGGAGGTGGGagcgagataaagagagacagaatgacTCTGGGCAGACAAGAGGAACAGGGCTGCAGCTGGAAAGAGTGACAGCTCAAGATCAAGAGGCtgatagagtgaaggaggagcccactaaggagggagggaggaggaggagtcttcAACAATACGAAGATAAAAAAAAATCGCTTTGGAGAGAGAAAGATCTACAAACAGAACCCGTCCAAACACAGCCATTACACTGGCGCAGCGTGTTGAGCCCAAGGAATATGGATTGAAGTCAAGACAAGTTGGAAATTTATCTGGGAACAGGACACCCTAATTAAACCAACAACCAAAGGAACAACTTCTATtgcgaagagagggagagaaagacagacagtgagagggagcaagagaagagagagcacaGGGCAGTGAACGAGTAAGGGAAAAAGAGTGGCTAGACAGAGGAGGGCAAAAGAAGAGAATTAATACCACCCACTGTGCCAATACCACACACAGAGTAAAATTGttacgcacatacacacattcaaAGACAGAAAACCTGCCTGtgccacacacacagtatttatGTCTCACACATTGGCTATACCACACACACCAAATTTCTCAAACAAGTTTGCATGCAACATATGCAGTAAGTATTCGACACGCTGAAATCAAAACGTTTATATCAACAGAAACGGAGAGAAACAAAGAAGAtaaagaggcatggagagacattAAAGCGTCATATGGGTTGGTATTACTACGCACAGAGTGACATAGACAGACAAAACGCAACATAGTGGCATCACGGGGCCTCCACAGGAGCAGGAACTCTTTGAAAACTAACCTGAGGAACTATACTGCCAACTTAACCCCCAAAAATAATTACCACAGAACTGAAGGCCGGTGATTCTTCTAAACTTTGACTACAATCCTATTACGATTAACCAGCAGCAAACCAGAGCAACTGTATTGAGGATCTATCATCTCCGTAGTATGGGTGCCTAAGACAGGCGAGCTGAAGAGCTGTGTCCCTGGAAGGAGCACCACCAGCCCTCCAGCCCTTCCCCACCATGCTGCCCCATACGGCCCAGGGCAGGGGCACCTTAAGCAGGGTACGAGGGCTCCTGCTGCTGCCCCTCCTAATGGTGCTGCTGGTGACTTTTTGTGCTGCACAGAGCGAAAAGAGTCAGGAGAACCAGGGAGAGAATAACACTGGCAGTACGGAGAGCCCGGAGACTGTCTCCTCAGATGTGGCCATCGTCAGTCCTCGTAACTCCTGGCTCGTCTTCAGACACAACTCCAACAAAGGAGAGAACAAGAAGACCAAGCCCCCAAAGAGGGCATCTAAGcaTGGTCTACCGGGCCCCCCCGGACCACCAGGCCCTCAAGGGCCACCCGGCCCCCCCGCCCCCCTGTTACCTCAGCAGGAAGAGCTGATGCAGGAGTTCCAGCTACGACTGAGAGaGATGGCTGGTGGACCCTGTCTGCTCTGTGAGCGACCTCCCCGTGTGGCCACCGCCTTCCACTGCCGCCTGCACCACCCACTCACCGTGCCACGCCGCAGTCTGCTAGAGCTGCAGCCATTCAGCAGTGTCTCGGACACTGAGCAGAGCCTCCAGAGGGGCCAGGGCTTCAACTCTAGCAGTGGCCGCTACACGGCTCCCGTCTCCGGGTTCTACCAACTCACCGCCAGCCTTCTCATAGagcCCAATGAGAGGTCACAAGCCAGGATGAAGGATAGTGTGAAGGCTTCCATCTGCATTGAGTCCCTATGCCAGAGCAATGTGTCTCTGGATTCGGTGACAGGGGTGGGTAGTTCAGGAGTCTTCAGCATCTTACTGACAGGAACCCTTTACATACAGGCGGGGGAGTATGTGTCCATTTTCGTCGACAACGGAACAGGCTCAGCACTCACAGTCCTCCAGGATACTTTGTTTTCCGGGATACTCCTGGGAGTGTGAACACAGTAAAAcaaatgatacacacacacacccatagactgAAATGAACAAACATATTAAaccacgtacagtaccagtcagaagtttggacacacctaatcattcaagggttttcccttatttttttatattttctacattgtagaataataattaagacatcaaaactgtgaaatagcacacatggaatcatgtagcaaccaaaaaagtgtttaaagcaaattaaa

Function

NR:

description
erythroferrone-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612657.2 True 2242 mRNA 0.49 8 46527650 46556891

Neighbor

gene id symbol gene type direction distance location
sft2d3 sft2d3 coding downstream 63958 46462625 ~ 46463692 (-)
dusp28 LOC106568652 coding downstream 110071 46407733 ~ 46417579 (-)
LOC110529956 LOC106568794 coding downstream 132532 46388942 ~ 46395118 (-)
crfb16 LOC106568648 coding downstream 201965 46309732 ~ 46325685 (-)
tmeff1a tmeff1 coding downstream 286213 46163653 ~ 46241437 (-)
pex5lb LOC106568657 coding upstream 94937 46651828 ~ 46803169 (-)
nebl LOC106568663 coding upstream 458994 47015885 ~ 47027075 (-)
dnajc1 dnjc1 coding upstream 470303 47027194 ~ 47035362 (-)
LOC110529973 LOC106568664 coding upstream 494182 47051073 ~ 47067973 (-)
LOC110529976 LOC106568668 coding upstream 673196 47230087 ~ 47260852 (-)
G713804 NA non-coding downstream 967 46524775 ~ 46526683 (-)
G713794 NA non-coding downstream 35947 46491362 ~ 46491703 (-)
G713786 NA non-coding downstream 44833 46482596 ~ 46482817 (-)
G713779 NA non-coding downstream 55969 46471478 ~ 46471681 (-)
G713778 NA non-coding downstream 56365 46471083 ~ 46471285 (-)
G713848 NA non-coding upstream 17895 46574786 ~ 46575007 (-)
G713851 NA non-coding upstream 20400 46577291 ~ 46577500 (-)
G713869 NA non-coding upstream 37502 46594393 ~ 46595176 (-)
G713870 LOC106568656 non-coding upstream 39588 46596479 ~ 46607316 (-)
G713884 NA non-coding upstream 69718 46626609 ~ 46627141 (-)
G712814 NA other downstream 1069402 45457777 ~ 45458248 (-)
G711133 NA other downstream 1988146 44538793 ~ 44539504 (-)
G709454 NA other downstream 3356568 43170760 ~ 43171082 (-)
G709272 NA other downstream 3806951 42719771 ~ 42720699 (-)
G714425 LOC106568665 other upstream 621533 47178424 ~ 47178736 (-)
G715865 NA other upstream 1732051 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 1985400 48356004 ~ 48616588 (-)
G716463 LOC106591423 other upstream 2203021 48759912 ~ 48761163 (-)

Expression


Co-expression Network