XLOC_025794 (cacng5b)


Basic Information

Item Value
gene id XLOC_025794
gene name cacng5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56366395 ~ 56394018 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050669
TAATTTGAACCAATTGTTTGACTCAAAAGATTCATAATATCCAGCGACGCGAGTCCAGTGAGCCACAGGCACGCGCGCGCTCGTGTTCATTCTCGTGTTCAGACCGAGCTGCTTCACTCCACAGCTGGATTACACTCACATCACTCCATCAATTACAACATTCAGtttGCTGGTTtgtttgagcgccccctgctgaagGTTGCGTGGCATGAGCGCATGCGGGAGGAAAGCCCTGACACTGCTCAGCAGTGTGTTTGCGGTGTGCAGTCTCGGGCTGCTGGGTATCGCCGTCAGCACTGACTACTGGCTCTACTTGGAAGAGGGCGTCATCCTGCCGCTCAACCAGAGCACCGACATACGCATGTCCATCCACTCGGGCCTCTGGAGAGTCTGCTTTCTGGCAGGTGAGGAGAGGGGCCGCTGCTTTACCATCGAGTATGTGATGCCCATGAGTGTTCAGCTGACCAGTGAATCGACTGTCAGTGTCCTCAagatGATTCGTTCAGCCACACCTTTCCCTCTGGTCAGTTTATTCTTCATGTTCATCGGTTTTGTGCTCAATAACATCGGACACATTCGTCCTCACCGCACCATCCTGGCGTTTGTGTCGGGGATCTTCTTCATCCTCTCAGGTCTGTCTCTGGTGGTGGGGCTGGTTCTCTACATCTCCAGCATCAACGACGAGATGTTCAACCGGACCAAGAGCAACGAGGCCTACTTCAGCTATAAATACGGCTGGTCGTTTGCATTTGCTGCCATCTCCTTCCTGCTCACTGAGaGTGCAGGTGTGATGTCCGTGTACCTGTTCATGAAGCGCTACACAGCTGAAGAGATTTACCAGCCTCACCCGAGCTTCTACCGGCCACGGCTGAGCAACTGTTCCGACTATTCAGGCCAGTTCCTGCACCCCGAGGCCTGGACACGAGGACGCAGCCCGTCAGACCTGTCCAGTGACACCTCGCTCCAGATGAACGCCAGTTACCCTGCCCTCCTTAAGTGTCCCGACTACGACCAGGTGTCATCCTCAccctgctgaaacacacacatacacacacacacacatgcacacgccaGCAGACGGACTgactgaatgagtgaataaatggtAAAGCTCTTGTCCTGCAGTGAGAGTGCAGGTCCAGCAGGCGGCGCTGCAGGATTTCAGTTTGTAGCAATTCACACTGCTAACATGTGGagttaaagtgacagtgcacccaaaaattaacattctgtCATTCTTAATTCATTgtttacttgtcacaaacctgtttgactttcttctgttgaacacagaagaagatattttgaagaattttggaaacctgtaaccattgacttccatagtatttgtttttcctactatgtatgtcAAAGGGATTATGCGttcaatttaaatgaattaaatgaaattaaacgaTGTTTATTCgccctaaaatagtttttaaaaatgtttgt
>TCONS_00050670
gtgtgaatgtgacagCGCGATGCAGTGTTTAGCTTGCttgttgctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgtgagtTTGTGTGCGCgtgaatgagaggtgtgtgtgtgtgtgtgtgtacgaatGAGAGGGAGagctttctctgtgtgtgtgtgcttgatgcttatgtgtgtgtgtttacacagacagcttgttataggctgtctggactctgtatagctgagtggttttcggttttgttctccctcCGCACGTTAGCGGGATCAGGCGCGTCGGGTAGAAaatggggcgggtcgggcagcgggacaacaaatgctcaatataagcaggagcggtcgggttcagacTAAAGCCTGGCGGGAGCGAAATTCAAAATTTTGTCCCGCACAGATCTCTAATTGCTGGTGTGTTTGAGCGCCCCCTACTGAAGgctttgtgtgtgtttctcagtttGCTGGTTtgtttgagcgccccctgctgaagGTTGCGTGGCATGAGCGCATGCGGGAGGAAAGCCCTGACACTGCTCAGCAGTGTGTTTGCGGTGTGCAGTCTCGGGCTGCTGGGTATCGCCGTCAGCACTGACTACTGGCTCTACTTGGAAGAGGGCGTCATCCTGCCGCTCAACCAGAGCACCGACATACGCATGTCCATCCACTCGGGCCTCTGGAGAGTCTGCTTTCTGGCAGGTGAGGAGAGGGGCCGCTGCTTTACCATCGAGTATGTGATGCCCATGAGTGTTCAGCTGACCAGTGAATCGACTGTCAGTGTCCTCAagatGATTCGTTCAGCCACACCTTTCCCTCTGGTCAGTTTATTCTTCATGTTCATCGGTTTTGTGCTCAATAACATCGGACACATTCGTCCTCACCGCACCATCCTGGCGTTTGTGTCGGGGATCTTCTTCATCCTCTCAGGTCTGTCTCTGGTGGTGGGGCTGGTTCTCTACATCTCCAGCATCAACGACGAGATGTTCAACCGGACCAAGAGCAACGAGGCCTACTTCAGCTATAAATACGGCTGGTCGTTTGCATTTGCTGCCATCTCCTTCCTGCTCACTGAGaGTGCAGGTGTGATGTCCGTGTACCTGTTCATGAAGCGCTACACAGCTGAAGAGATTTACCAGCCTCACCCGAGCTTCTACCGGCCACGGCTGAGCAACTGTTCCGACTATTCAGGCCAGTTCCTGCACCCCGAGGCCTGGACACGAGGACGCAGCCCGTCAGACCTGTCCAGTGACACCTCGCTCCAGATGAACGCCAGTTACCCTGCCCTCCTTAAGTGTCCCGACTACGACCAGGTGTCATCCTCAccctgctga

Function

symbol description
cacng5b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5).

GO:

id name namespace
GO:0051968 positive regulation of synaptic transmission, glutamatergic biological_process
GO:0019226 transmission of nerve impulse biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0006816 calcium ion transport biological_process
GO:0099590 neurotransmitter receptor internalization biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0016247 channel regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120104-3 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Orthologous to human CACNG5 (calcium voltage-gated channel auxiliary subunit gamma 5).

Ensembl:

ensembl_id ENSDARG00000039240

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050669 False 1455 mRNA 0.49 6 56366395 56394018
TCONS_00050670 True 1366 mRNA 0.54 5 56377326 56393599

Neighbor

gene id symbol gene type direction distance location
XLOC_025793 NA coding upstream 5745 56358682 ~ 56360650 (+)
XLOC_025792 prkcab coding upstream 24276 56163276 ~ 56342119 (+)
XLOC_025791 FP326652.1 coding upstream 258486 56099256 ~ 56107909 (+)
XLOC_025790 NA coding upstream 712131 55646873 ~ 55654264 (+)
XLOC_025789 NA coding upstream 878154 55482120 ~ 55488241 (+)
XLOC_025795 rac1b coding downstream 180605 56574623 ~ 56594285 (+)
XLOC_025796 CU019632.1 coding downstream 225177 56619195 ~ 56622872 (+)
XLOC_025797 CR759836.1 coding downstream 251692 56645710 ~ 56685946 (+)
XLOC_025798 rnf213a coding downstream 305169 56699187 ~ 56813923 (+)
XLOC_025799 NA coding downstream 427681 56821699 ~ 56822203 (+)
XLOC_025429 BX649540.1 misc upstream 26117359 30248739 ~ 30249036 (+)
XLOC_025788 NA non-coding upstream 978738 55386215 ~ 55387657 (+)
XLOC_025802 NA non-coding downstream 555937 56949955 ~ 56957558 (+)
XLOC_025806 NA non-coding downstream 1032142 57426160 ~ 57480996 (+)
XLOC_025807 NA non-coding downstream 1040243 57434261 ~ 57436304 (+)

Expression


Co-expression Network