LOC118965520


Basic Information

Item Value
gene id LOC118965520
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46704259 ~ 46714142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052882.1
atctagAATGGACCACCaacaaaaggacatccagccaatgtCAAGCCAatttaacacaactgtgggaagcattggagtcaacatgagccagcatccctgtggaacgcttgacaccttgtagagttgaCTCCAACTTGACACCCTGATGAACTGAGGGTGATCTGACGGGAAAAGGGGGAATGCAACTGAATATtagttttcttaatgttttatgtTTTAGGTCTATCAACATTTTTGGCCTAATTGCTAAAGGCTGCCAGTGCATGTTGGGCCATTGCTCGAGGAGAGTGAGTCAAAGAGAGAGACATTGCAGCACCAGGGAAGTTGAATTCAATTTGGGGAAAAACTCAGATTCAAAACCAGAGACAACATCTTGGTACTGTACCTTGCCAGCAAGAAATGGTAAAAGAGAAAAGAGAATCAAACACTATGTTAAGCAGGTTTCTGGTGTTTTCTGAAGCCAATGTAGCATGgtgaatgtacagtgccttccgaaagtattcggcccccttgaactttgtgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcagacAATGTAACTTGTCTCTGAAATGTTAGTTATCACGCAAATGTGGTCCCCGGACCACCTGTGTTACACTTCACCCCCCTTTGACGTCTTCCTCGAAGAGACCAATCAAAGTAACATAaccaatgcctaggctttagctcagtaggCTAACAAAGTCTTAACCCAGTCACGTTACCCTTATAATGAGTACTTGAAACAAACCAATCTTCAGTTTCTCATCACATAAGCCTGGGTCACCAAAAAATTCTCTTTTGATGATTAACCTTGCAGGATTATGCAGACTTGTATTAGTGTAGCAGATTGGGATCTGTGAAActcactcctcagcctgaagtgtgaCCCCTTGCGCTATTGAAGAAGCCTTTTTTAAATGGCGTGATGGGATGGTATGGTACAGGAGGACGGTCACGTGTGTTTTTAAAGCAGAGGTCCCGAGTTTGAGTCTCTGTATAAGCTGAATCAGGGGGAAGcggtactcgctaagcaagctGGACTCTCACAACAGCCTGAAGTCACCCTATCaagcctagctagctaagttagacCTGCTGGCTACTGGCCAAATTAGCTAACGTTCTTGTTTCGAGTTAATaagataaataaaacatctcaaaTTAGCTACTCACTTTAACTGCTTTGAGGTATTTTCTGAATAGTTTCTCACTTTGTTTTTCCAGTTGTCAGTTCGACCACAGCATTTACACACTCATTTGTGGCGCCCAAATAAAGAAAATGACGGTTTGTATTCTGCAGCAGAAAAAAAGTGGTTCTTGTTGCTAGGCTACCAGTTACAGTGCTTGTAGCTTGCGGTTTGCACCTTTATGAATTATATGGATTtaatatataacaaagtattgagcatGTCCTCAAAACTCAAATAAACAGACAATGTAAATCAAAACGCATATCAAGATCCTGATACGGACCTCAGTCAAGAGCATATGCATTGTATTTGTTGAGAAAATATACTATGTAGCCGTATTGTTAGCCAACAGATCCGAGCCACTTGCTTACAGCTGCAATAGGGTCAGACAGGCTTCCTGTATAGATTAAGACACTGTGGAGCCAGCGTGAGATATAGTTTGGAAAAAGTACATAAATCCAGGGATGAGAAATGCACTGTTCTACGAATTGCCCCATTATTCCAACTACCCCAAGACGATTGAACTAATGCTAGTTTTTTGGTTTGTTATTAaagttgtatatattttttccacaaacacattttttaaaaacaacatACAGCATAACAATATTGAGCATGACATCCAGACATATCCTCTGAAGGGGTTAAACCAAGGCCTCATACCTTTTAAAGGTTTAATAAATTGTGTTAAATTGTGATAAACTGTAAGGAGACCTCTGGGTGTGTGGTAACATCTGTTTTGAGTGTTGTCCCCTTCAGACACTATCAGAAGGCGGAAACCGTGGCTATCTGAGTTTCTGCGAACACGACTGTTTCCCTGAGAACACAAGGCTGCCGCAGGCCTGATGAAAACAGCCTCCTGTCAGAAGATGCTTAGACTCGTTCACCTTGTTATGACCCTATTCTTGTGATGAAAAGTCATGTTTCGGTCAAACCCACTTCTGAACTTTTAATTGCTGACAAGATGGTTGCtgctgtcagggagaggttagatttattaaaatgttgttgcCAGGGAAAGTCACGCAAGGGGGACTGGGGAGGCTATATGAGTACAGGATGTCTTAGACACTGCAGAACCTGGGGAGAGaatcatatactgtactctgtaccaacTTCTGCCTATAATTGTATTACTAAAGGATATCTTAATACTTATTAAACAAAGAGTCAGTGTTTACTTTCtactacaaatatatatatataagtttgTAAATTATATAGACCTAATCATCTGTTGAAGAAATTGACCAACACTTTGGTGAGCTTTCCAGGATCGAGTGACCACTTCGCTAGACTGACCATTGATCCACGTGCAAGAGCTACAAAATTATAAGGAAGGCCCAGGAAGTTCAAGAACAGGGCGACCCAGACAGCCTGCCTGTTGACGTTGGAGAGTGGATCAAGCTGAAGGTCCACAAACAAACATGGAACCACCCCAGATGGATGGGCCCATAACAGGTCATCTCAGCAACACCCACAGCAGTGAAGGTCCAGGAGCACCAGGGGTGGCACCACCTATCACACTGCCAGAAGACGTCACAGCCCTCATAACAGATAAGAGTGCACAACCAGACCCAGATGTTGTCACACATGAACATTATGCTCACATTGTTAAAAACAAAACTTGGGGTAAACCTTTAAAAAGGTACATGTTTTTGGTTGTTCTTATTCTGCACCAGCAGTCTCTGCTCAGTGGAATAGAGATCCAGGAGAACCAATTGAAAACCAGTAATCAATGGGTAAACATGGTCCAAAACCAGAGTAGACGAGTCACGCCAAGTGGTTCGTATGTAGTCGTTTTGAAAAACCCTCGGAGTGAGTTGTTTGGATCAATTGTCGTAGGTGATTGGATTAACAACGTCACCTACTCCATGCAGGCCCATATGAATTTGACTATTGCTGGTTTTGCCCTCCTTTCCACTGATGTTCAGAGTCTTAAAGCTGTTACAGCCAGGTATAGCCTGGCATTAGACAACATCCTGGATAAGGAGGGGGGATACTGCAGGGCCCTAAATTCTATTTCCACCGACTGAATGTGCTATGCTTCTCCTTGACTCCTCTGACAGAGATTTTGAAAGAATTAACACGGTTGGCTGATACCTACACCCCCACAGGAGAAGACTCCTGGTTCCCGTTTGGGTGGTTGAAAGATAAATTAGGACATTTTGGATTTAAGTTGTTTTCCATTTTGGTTCCATTACTGCTCCCACTGATCGTTTTGTTAATTTGCATTTGTGCATTCTGTGCAGCTGGCAAATGTGTACTTCATAAGGCTATGCCAGGCATGTTTATGCTTCATGTTCCTCATCCCCCAGACCCTTATTTCTATTCTCAATCTCCTGAGGATTGCTTGCAATCTAACGCACCTTTTGTGGATGATTCTTATAATCATTATGCTTGAGTTACTTCACTTTTGTTGAGGCCTTGAGGCAGTTCGACCACAGCATTTACACACTCATTTGTGGCGCCCAAGTAAAAAAATGACGGTTTGAATTCTGCAGCAGAAAAAAAGTGGTTATTGTTGCTAGGCTAACAGTTACAGTGCTTGTAGCTTGCGGTTTTGCGCCTTTATGTCTAAGAATTATATGGCAATAATATTTCAAATTATATGTCAATAATATTTCAAATTATTGAACATGTCCTCAAAACTCAAATAAACAGAAAATGTAGTATATCAAAATGCACATAAATATCCTGATACGGAACTCAGTCAAAAAGCATATGTAGTGTATTTGTTGAGAATATATACTAAATTCGACAAAAAAAGacacgtccctttttcaggaacctgtctttcaaagataatttgtaaaaatccaaataacttcacagatcttcattgtagagGGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052882.1 True 4179 mRNA 0.41 3 46704259 46714142

Neighbor

gene id symbol gene type direction distance location
mfn1a LOC106568656 coding upstream 85093 46594403 ~ 46619166 (+)
si:ch1073-184j22.2 LOC106568795 coding upstream 191101 46510102 ~ 46513158 (+)
wdr33 wdr33 coding upstream 242133 46419920 ~ 46462126 (+)
proca proc coding upstream 297354 46399019 ~ 46406905 (+)
LOC110529955 NA coding upstream 320005 46378439 ~ 46384254 (+)
phb2a LOC106568660 coding downstream 148419 46862561 ~ 46898724 (+)
LOC110529968 LOC106568661 coding downstream 202003 46916145 ~ 46931901 (+)
LOC110529116 LOC106597230 coding downstream 239978 46954120 ~ 46956941 (+)
LOC110529969 LOC106568662 coding downstream 263937 46978079 ~ 47004330 (+)
LOC110529974 LOC106568665 coding downstream 426515 47140657 ~ 47194560 (+)
G713514 NA non-coding upstream 48841 46636155 ~ 46655418 (+)
G713513 NA non-coding upstream 68198 46635629 ~ 46636061 (+)
G713512 NA non-coding upstream 68931 46635104 ~ 46635328 (+)
G713508 NA non-coding upstream 76134 46627913 ~ 46628125 (+)
G713504 NA non-coding upstream 78952 46624969 ~ 46625307 (+)
G713610 NA non-coding downstream 66675 46780817 ~ 46848749 (+)
G714030 NA non-coding downstream 145128 46859270 ~ 46859590 (+)
G714062 NA non-coding downstream 193288 46907430 ~ 46907812 (+)
G714103 NA non-coding downstream 248049 46962191 ~ 46962390 (+)
G714123 NA non-coding downstream 285136 46999278 ~ 47000089 (+)
G713405 NA other upstream 238032 46465398 ~ 46466227 (+)
G711912 NA other upstream 909710 45793269 ~ 45794549 (+)
G711845 NA other upstream 1056882 45646857 ~ 45647377 (+)
G711021 NA other upstream 2255286 44448584 ~ 44448973 (+)
G709490 NA other upstream 3506617 43196560 ~ 43197642 (+)
G713574 NA other downstream 1773 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 1823601 48537743 ~ 48544164 (+)
G716133 NA other downstream 2046201 48760343 ~ 48760740 (+)
G716862 NA other downstream 2618699 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 2832070 49546212 ~ 49547085 (+)

Expression


Co-expression Network