LOC110529968 (LOC106568661)


Basic Information

Item Value
gene id LOC110529968
gene name LOC106568661
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46916145 ~ 46931901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612667.2
CCGGAAGTAACTTTTTTTTCTGCCTCAAACTTCCGACGAATTGTTTACGACTAGAACGTTTACCGCTTGTGTCAAATTAAAGTCTGAGTTGATTTTTCGTCGCAAATAAAAGGCAAACTTACGAAGCAGTTTATGAAaattaacatggcaggttagCGTAATTTTATTGAAATTGTTGTGCTTTTTACTTACATTTTCCAATAACTGGATCCCTTCTAACCATTACCAACTGATGTTTTTATATATGATATGACGCTACCGGCTGTCAATCGTGCGCTCTTTGCTAATAGGAGTCAAATACAACTATTTATTTCAGAGGTCTTACGCAACCTGTCATTAAGTAGCCGATTCAATTTTAAGACGCAATCATTGCAATGTCTGAAAACGGTGACTTCTCAATCTAATGCTGTTACGGTGCACAGAAGGTCACAGCTATACCGGCGGATATGCGAAAGCAATGGGGATGAAAATAGTCGTGCTACGAGTAACTGGACTTATgcaatgtggagtgcaattgCGTTTTCTCTCTTCAGCAAAGCTGAGGAGGACACCAGAACTGAGGCTCAGAAGAAAGAAGATGAGATCATTTTACTTTTGAAGAGAGCCAAGCTCAGTATAATGCGTGGGCAGCTTCATGGAGCCAATGGATTCCTTCACCAGGCAATTGCGCTGGCCCACCAATCTCGCAATACACAAGCAATCATCTACACCTACAGCCTGATGGCAAACCTTGCCTATGTCCAAGGTGAGCTGGATAATGCAGAGAAACTGTTCAAAGCGGCCATGAGTTTCATGTTGTCCGGAGGAACACCAGAGGACGACAATGGGGTCATTGAGATGTCCTTGAAGCTTGCTACCATATATGCCGGCCAGAATAAGAATGACCTGGCAGAGACTGGTTTCCAGTTTTGCACTGAATCCCTTGAAGCCAAGTTAGAGAAATTCAAGGAACTTCCCGCTGAGGAACAGTCAGAGGAGTTGCGGATGGAGACCCGGCTGCTGCTGGGCCTGACCTTGGACTCCCACGCTCGCTACATGGCCGCCACACACCGCCTGAGCCGGGCGGCACTGGACTACAAGCGAGCCCTTCTGATCTGCCAGGAAGAGCAGGGAGAGACCCACCCACAGTCGCTGGTGCTGCTGAGTGACCTGGCCACCATCCTGGACCTGCAGGGCCGCCACGATGAGGCCCTGCCCCTGGTAAAGCAGGCCGTGGAGCTGAGCAGAGAAGCCGGGCACCCTGACCAGCACGTGTTGTTGGGAAACATGGCAGGCGTCCTACTGCACAATGGTCTGTTTGAGGAGTCAGTGAAGCTGTACAAGGAGGCCCTGGCTCTGGCCCAGTCTGCAGGAGATGAAGAAGCAGTAGAGCAGATCCGGGAGGGGCTGAAAGAGGTTGGCAACAGGAGGAAAGCAAAGAAGGCGGAAACAGAAGCCCCCAAGACTGAGACCGACTGACCAGTTGGATCAACCAAACAAATATTAACACAACCCCAAGCCATCTCTGAACATTTCTGTTTGCAAATCTGAAGGGACTGAAATTAGATGGGTCATGTATGCACAAGATACGGAGCACATGGCTTATACAGTAGctcaggaggagaaggagaaatgcaATAACACAATCACACTGTTTAAGACAACAGTTTATCTTTCTATGGGTATGCAACAATCTCATCTGTGAAACCCTGTCATGTTTTGTCTGTAATGTGTGAAATCTCACTTCAATGAGGTGTTCTTTTGTTGTCAGATTGGCTCAAGATGTAAGGGGAAAGACTCTGAGCTAAAATAAGTAAGACAAAGCTGGAATTCAGTCAAAGGTATGTTGTTCGACAAGCGTATTGCACATTTACTTTTAAATTGCTGCTCCTTTATATTTACTCTTGAGACAACATCCGCAGCGTTTATCCTGAATGCTATCTCTTTACAAACGTCGGGGAAAATGCAATTTGTTGACAATCCGCTTTTGATTGAATCCCAGCCTGAATAATGGCATCTTAGGAGAATGGCAAGTCATGTGAATGACTATAAATAAAACTGTGTAAGACATGTACAA

Function

NR:

description
tetratricopeptide repeat protein 19, mitochondrial-like

GO: NA

KEGG:

id description
K18169 TTC19; tetratricopeptide repeat protein 19, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612667.2 True 2056 mRNA 0.46 10 46916145 46931901

Neighbor

gene id symbol gene type direction distance location
phb2a LOC106568660 coding upstream 17421 46862561 ~ 46898724 (+)
LOC118965520 NA coding upstream 202003 46704259 ~ 46714142 (+)
mfn1a LOC106568656 coding upstream 296979 46594403 ~ 46619166 (+)
si:ch1073-184j22.2 LOC106568795 coding upstream 402987 46510102 ~ 46513158 (+)
wdr33 wdr33 coding upstream 454019 46419920 ~ 46462126 (+)
LOC110529116 LOC106597230 coding downstream 22219 46954120 ~ 46956941 (+)
LOC110529969 LOC106568662 coding downstream 46178 46978079 ~ 47004330 (+)
LOC110529974 LOC106568665 coding downstream 208756 47140657 ~ 47194560 (+)
LOC110529975 LOC106568666 coding downstream 277650 47209551 ~ 47229335 (+)
LOC110529979 NA coding downstream 364762 47296663 ~ 47298281 (+)
G714062 NA non-coding upstream 8333 46907430 ~ 46907812 (+)
G714030 NA non-coding upstream 56555 46859270 ~ 46859590 (+)
G713610 NA non-coding upstream 67396 46780817 ~ 46848749 (+)
G713514 NA non-coding upstream 260727 46636155 ~ 46655418 (+)
G713513 NA non-coding upstream 280084 46635629 ~ 46636061 (+)
G714103 NA non-coding downstream 30290 46962191 ~ 46962390 (+)
G714123 NA non-coding downstream 67377 46999278 ~ 47000089 (+)
G714069 NA non-coding downstream 71714 47003615 ~ 47003838 (+)
G714126 NA non-coding downstream 82006 47013907 ~ 47014115 (+)
G714136 NA non-coding downstream 104088 47035989 ~ 47036392 (+)
G713574 NA other upstream 146899 46715915 ~ 46769246 (+)
G713405 NA other upstream 449918 46465398 ~ 46466227 (+)
G711912 NA other upstream 1121596 45793269 ~ 45794549 (+)
G711845 NA other upstream 1268768 45646857 ~ 45647377 (+)
G711021 NA other upstream 2467172 44448584 ~ 44448973 (+)
G716035 LOC106581475 other downstream 1605842 48537743 ~ 48544164 (+)
G716133 NA other downstream 1828442 48760343 ~ 48760740 (+)
G716862 NA other downstream 2400940 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 2614311 49546212 ~ 49547085 (+)
LOC118965615 NA other downstream 2921486 49853027 ~ 49854435 (+)

Expression


Co-expression Network