LOC110529973 (LOC106568664)


Basic Information

Item Value
gene id LOC110529973
gene name LOC106568664
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47051073 ~ 47067973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612673.2
AGGAATGAGACCACGTGATATAGCGGGGCGGTCGAACTAGCCTGCAAGCCATTTTGGGAACAGTGTCAGTTTCTACTGCTATCAAGTGCCGCTCTATGCATAGCCTACTGCTTCATAGTGGTCGAGCACGGAGCAAACCGATAACCTATTTGGACCGGCACTGTTCAGAATCTGTGTAAAGTTTCTGACTCTCCGCGCGTTGATCTTTTTCTATTTGTTGAGAATTTCGCCACTGCCATTGAACAGCATTTGTAGCTCGTTCCAAGATGGCCGCTTGGGTTGCATTCATTTTTTTCTGATCGACTTGTAACTTTCATTGTCCATCACATACGGGATATAACCCGTTAGGATTTTACAATTTTAGGACAATGCACAGAACAACAAAAATCAAGATTACTGAGCTGAATCCACATTTGATGTGTGTCTTGTGCGGTGGATATTTTATCGACGCAACCACCATTGTGGAGTGTTTACACTCATTCTGTAAAATGTGCATTGTTTGTTATCTGGAGACCAGCAAATTCTGTCCAATTTGTGATGTCCAGATTCACAAAACGAAACCCCTTTTGAATATTAGgtcTGACAAGACCCTTCAAGACATTGTTTACAGGTTGGTACCTGGGCTTTTCAAAGATGAAATGAAACGAAGGAGGGATTTCTATGTTGCACATCCTTCTCTTGATGctggaaatggaTCAAATGAAGAGCGAGGGGAGGTGGCAGATGAAGAAAAGAGAATAATAGCCGACAATGAGATTATAAGCCTGTCCATTGAATTTTTTCATCAGAGCAAGCTGGGAAATGAGGATGGTGAAGTCAAGGATACGAAGACAGAGATGATTGACAAGCGATACTTGCAATGTCCAGCAGCCATGACCATAATGCATCTGAGGAAATTCCTTCGAAGTAAAATGGATATTCCATGCACCTATCAGATAGAAGTTATGTATGAAGATGAACCATTGACGGATTACTACACATTAATGGACATTGCACACATCTACACCTGGAGAAGGAATGGTCCCTTGCCATTGAAATACCGGGTACGAACAGGCTGCAAGAAGATGAAGATGAGCAGCCCAAGAAACGGGGCCAAAACCACACAACATGCTGGAGGAGTATGCTATGACTCTGGGACTGGGGGTGACAAGCATCTGAACAATGACCCCGAAGCTccctccacctcatcctcctctctgcccaGTCCGAGCCACAGAATTGTccactcatcatcatcatcgcttACCCACTTCCCCCACCTCTCCAGCATTGGCACCTCAACAAACGGTATCTTAACAAAAGCGGGTCCAAATCAACTTTCCCGGACATTCACGCCAACATAGACTGTAGATACTTTTATTATTGTTTCAAACATTTGCCGTTTTTATATAATCCTATGTGGACAATATATTTGTTCATTTGTCTAAGAAAGACTGTGGAAAGACTTATTGAATTTGCTCAATGGCATCTGCAGATCGGATTTGAAATGGCTAGCCTAGTAATGTGCCATGTGGTTTGGAATGTGAAAAAAATATCACGTTTACTTCAAACCTGGACATTCCAATGATTCCTATAACTGAATTGCCAAATACTGTAGTTGATGGAAATGGAAATGTGGTTTTGGCTTCGTCAACTTCATTTGTCAACACACAACAATAGTTGACAAAAATAGTTGACTATTGCCCTCTGCATACATGTAATGGGGAATTTAATAAACACAACCTGATTGTT
>XM_021612672.2
TGGAGGACTTCGATAGTTATAACCAGTGGAAGGTAAGATTCTGAAACCAGGTGCTGTGCCGAGCGTGAATGTGAAGCCTGCAACCTCTATTTCCTACCGACCTACCGGTACATCATGAGTTTCAGCAGTGATGGAGATGAACTGGGTAAATTCAATGTGGATTTACATCACTATATCGATATTGGATTAGCTGATATTGGATTAGCTGACTCTCCTTCGGCCGGTGAAACTGCCTCTCCCTCTGAAGGCCAATCCTTGGCTCTTCTTTAACTTTGGTAGCTAACTTAGATGTCTATCGGATTTTACAATTTTAGGACAATGCACAGAACAACAAAAATCAAGATTACTGAGCTGAATCCACATTTGATGTGTGTCTTGTGCGGTGGATATTTTATCGACGCAACCACCATTGTGGAGTGTTTACACTCATTCTGTAAAATGTGCATTGTTTGTTATCTGGAGACCAGCAAATTCTGTCCAATTTGTGATGTCCAGATTCACAAAACGAAACCCCTTTTGAATATTAGgtcTGACAAGACCCTTCAAGACATTGTTTACAGGTTGGTACCTGGGCTTTTCAAAGATGAAATGAAACGAAGGAGGGATTTCTATGTTGCACATCCTTCTCTTGATGctggaaatggaTCAAATGAAGAGCGAGGGGAGGTGGCAGATGAAGAAAAGAGAATAATAGCCGACAATGAGATTATAAGCCTGTCCATTGAATTTTTTCATCAGAGCAAGCTGGGAAATGAGGATGGTGAAGTCAAGGATACGAAGACAGAGATGATTGACAAGCGATACTTGCAATGTCCAGCAGCCATGACCATAATGCATCTGAGGAAATTCCTTCGAAGTAAAATGGATATTCCATGCACCTATCAGATAGAAGTTATGTATGAAGATGAACCATTGACGGATTACTACACATTAATGGACATTGCACACATCTACACCTGGAGAAGGAATGGTCCCTTGCCATTGAAATACCGGGTACGAACAGGCTGCAAGAAGATGAAGATGAGCAGCCCAAGAAACGGGGCCAAAACCACACAACATGCTGGAGGAGTATGCTATGACTCTGGGACTGGGGGTGACAAGCATCTGAACAATGACCCCGAAGCTccctccacctcatcctcctctctgcccaGTCCGAGCCACAGAATTGTccactcatcatcatcatcgcttACCCACTTCCCCCACCTCTCCAGCATTGGCACCTCAACAAACGGTATCTTAACAAAAGCGGGTCCAAATCAACTTTCCCGGACATTCACGCCAACATAGACTGTAGATACTTTTATTATTGTTTCAAACATTTGCCGTTTTTATATAATCCTATGTGGACAATATATTTGTTCATTTGTCTAAGAAAGACTGTGGAAAGACTTATTGAATTTGCTCAATGGCATCTGCAGATCGGATTTGAAATGGCTAGCCTAGTAATGTGCCATGTGGTTTGGAATGTGAAAAAAATATCACGTTTACTTCAAACCTGGACATTCCAATGATTCCTATAACTGAATTGCCAAATACTGTAGTTGATGGAAATGGAAATGTGGTTTTGGCTTCGTCAACTTCATTTGTCAACACACAACAATAGTTGACAAAAATAGTTGACTATTGCCCTCTGCATACATGTAATGGGGAATTTAATAAACACAACCTGATTGTT
>TU811888
GCCATTTTGGGAACAGTGTCAGTTTCTACTGCTATCAAGTGCCGCTCTATGCATAGCCTACTGCTTCATAGTGGTCGAGCACGGAGCAAACCGATAACCTATTTGGACCGGCACTGTTCAGAATCTGTGTAAAGTTTCTGACTCTCCGCGCGTTGATCTTTTTCTATTTGTTGAGAATTTCGCCACTGCCATTGAACAGCATTTGTAGCTCGTTCCAAGATGGCCGCTTGGGTTGCATTCATTTTTTTCTGATCGACTTGTAACTTTCATTGTCCATCACATACGGGATATAACCCGTTAGGATTTTACAATTTTAGGACAATGCACAGAACAACAAAAATCAAGATTACTGAGCTGAATCCACATTTGATGTGTGTCTTGTGCGGTGGATATTTTATCGACGCAACCACCATTGTGGAGTGTTTACACTCATTCTGTAAAATGTGCATTGTTTGTTATCTGGAGACCAGCAAATTCTGTCCAATTTGTGATGTCCAGATTCACAAAACGAAACCCCTTTTGAATATTAGgtcTGACAAGACCCTTCAAGACATTGTTTACAGGTTGGTACCTGGGCTTTTCAAAGATGAAATGAAACGAAGGAGGGATTTCTATGTTGCACATCCTTCTCTTGATGctggaaatggaTCAAATGAAGAGCGAGGGGAGGTGGCAGATGAAGAAAAGAGAATAATAGCCGACAATGAGATTATAAGCCTGTCCATTGAATTTTTTCATCAGAGCAAGCTGGGAAATGAGGATGGTGAAGTCAAGGATACGAAGACAGAGATGATTGACAAGCGATACTTGCAATGTCCAGCAGCCATGACCATAATGCATCTGAGGAAATTCCTTCGAAGTAAAATGGATATTCCATGCACCTATCAGATAGAAGTTATGTATGAAGATGAACCATTGACGGATTACTACACATTAATGGACATTGCACACATCTACACCTGGAGAAGGAATGGTCCCTTGCCATTGAAATACCGGGTACGAACAGGCTGCAAGAAGATGAAGATGAGCAGCCCAAGAAACGGGGCCAAAACCACACAACATGCTGGAGGAGTATGCTATGACTCTGGGACTGGGGGTGACAAGCATCTGAACAATGACCCCGAAGCTccctccacctcatcctcctctctgcccaGTCCGAGCCACAGAATTGTccactcatcatcatcatcgcttACCCACTTCCCCCACCTCTCCAGCATTGGCACCTCAACAAACGGTATCTTAACAAAAGCGGGTCCAAATCAACTTTCCCGGACATTCACGCCA

Function

NR:

description
polycomb complex protein BMI-1-B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612673.2 False 1731 mRNA 0.42 10 47051073 47057707
XM_021612672.2 False 1681 mRNA 0.42 10 47051073 47067973
TU811888 True 1290 TUCP 0.44 10 47051467 47057660

Neighbor

gene id symbol gene type direction distance location
dnajc1 dnjc1 coding downstream 15711 47027194 ~ 47035362 (-)
nebl LOC106568663 coding downstream 23998 47015885 ~ 47027075 (-)
pex5lb LOC106568657 coding downstream 247904 46651828 ~ 46803169 (-)
si:ch1073-184j22.1 LOC106568655 coding downstream 494182 46527650 ~ 46556891 (-)
sft2d3 sft2d3 coding downstream 587381 46462625 ~ 46463692 (-)
LOC110529976 LOC106568668 coding upstream 162114 47230087 ~ 47260852 (-)
LOC110529977 LOC106568669 coding upstream 215766 47283739 ~ 47295308 (-)
LOC110529978 LOC106568670 coding upstream 230322 47298295 ~ 47303919 (-)
LOC110529981 LOC106568675 coding upstream 329810 47397783 ~ 47439942 (-)
LOC110529117 NA coding upstream 587079 47655052 ~ 47656068 (-)
G714279 NA non-coding downstream 5577 47044704 ~ 47045496 (-)
G714276 NA non-coding downstream 14756 47036027 ~ 47036317 (-)
G714271 NA non-coding downstream 35262 47015599 ~ 47015811 (-)
G714262 NA non-coding downstream 40804 47003967 ~ 47010269 (-)
G714266 LOC106568662 non-coding downstream 49388 47001045 ~ 47001685 (-)
G714290 NA non-coding upstream 1603 47069576 ~ 47069788 (-)
G714296 NA non-coding upstream 7887 47075860 ~ 47076089 (-)
G714298 NA non-coding upstream 9788 47077761 ~ 47077967 (-)
G714300 NA non-coding upstream 11125 47079098 ~ 47079448 (-)
G714318 NA non-coding upstream 21542 47089515 ~ 47089752 (-)
crfb16 LOC106568648 other downstream 725392 46309732 ~ 46325685 (-)
G712814 NA other downstream 1592825 45457777 ~ 45458248 (-)
G711133 NA other downstream 2511569 44538793 ~ 44539504 (-)
G709454 NA other downstream 3879991 43170760 ~ 43171082 (-)
G709272 NA other downstream 4330374 42719771 ~ 42720699 (-)
G714425 LOC106568665 other upstream 110451 47178424 ~ 47178736 (-)
G715865 NA other upstream 1220969 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 1474318 48356004 ~ 48616588 (-)
G716463 LOC106591423 other upstream 1691939 48759912 ~ 48761163 (-)
G716480 tnk2 other upstream 1714148 48782121 ~ 48782515 (-)

Expression


Co-expression Network