XLOC_025795 (rac1b)


Basic Information

Item Value
gene id XLOC_025795
gene name rac1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56574623 ~ 56594285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050671
CTTCAAACTTTCTTACTCGACTTCATTCCTGTGTGCGGGAATGAGAGGAGGAAGAAAAGTTATTTTAGAGAAGCGCCTTACCGTGCAGCTGTGACTGGTGTTGTTTGAAGCGGCGTCGCTCGTTAGAGGGGTTTTTTCATCAGTTCCGCGCGGAGGGAGAGCAAAAATCGAGTAAAAGTCATGCAGGCCATCAAGTGTGTGGTCGTCGGTGACGGGGCTGTGGGTAAAACATGTCTGCTGATCAGCTACACAACCAATGCTTTTCCCGGAGAATACATCCCCACAGTATTTGATAATTATTCTGCGAATGTGATGGTGGATGGGAAACCGGTGAATCTGGGCCTGTGGGATACAGCAGGACAGGAGGATTACGACAGACTTCGCCCTCTCTCGTACCCTCAGACGGACGTGTTCCTCATCTGCTTCTCTCTCGTGAGTCCTGCCTCTTTCGAGAACGTCCGTGCAAAGTGGTATCCAGAAGTGAGACATCACTGTCAAACCACTCCCATCATCCTGGTGGGAACCAAGCTTGATCTGAGAGACGACAAGGACACCATTGAGAAGCTGAAGGAGAAGAAGCTCACTCCCATCACCTACCCTCAGGGCCTGGCCATGGCCAAAGAGATCGGGGCAGTGAAGTATCTGGAATGCTCGGCACTCACACAGCGTGGCCTGAAGACGGTGTTTGATGAGGCCATCCGGGCCGTCCTGTGCCCTCCACCCGTcaagaagaggaagaggaaatGCTCCCTGCTGTAGTCTTGAGGAAACGCCGCTGTAATCCAAACTGTATTCCTAAGAGGAGAAGTGAGAAACGACACTGCGGTTTCCTTTTTCACTTCCCTCACTGTAATTATACCAGTACAACTTTATACCTTCACAAACAAATGTTATCAATATTATCGATAGAAGTAGTAAGAATTATCCCCAACGACCGACACTACAGGACGACCTGCGGCCTTTGACTATTGGATGTTAACGTTCAGTTCTTGAAGTTGGTTCCTTCCATTGAGAACCCACAATGTTTGTTTATAGTCTTTGTTTGAAAGGAATGAAGATCTTGCCAAACAGCACTACATTAGGGTGGGGCAGCATCACGCGTACTGATTTGTAACCCCTAAAGGGCAGCGATCATTTGGCGAACTAGAGCTAACGGTTGAAGCCGGTGAGTTTTCAGTGAAGGCTTCTATCTCATGCCTGTTTCTGAAACATGCGGTTCTGTTAATGGAAGGATGAAGAGTCTGAACTGATGTTTATCGGTCTTCATTATGTCTCTGCACACTATTTGCCATTTGTTTAGGGAGTTTATTCTGTAATGAACATGAACGTCCTGGCCATGTTTCACTCTTGAATTGTAAAAAACGGATTTTGCTTTTTAGAAACAGTTTCATGACTATTAAATctcttttacttta
>TCONS_00050672
GGGAATGAGAGGAGGAAGAAAAGTTATTTTAGAGAAGCGCCTTACCGTGCAGCTGTGACTGGTGTTGTTTGAAGCGGCGTCGCTCGTTAGAGGGGTTTTTTCATCAGTTCCGCGCGGAGGGAGAGCAAAAATCGAGTAAAAGTCATGCAGGCCATCAAGTGTGTGGTCGTCGGTGACGGGGCTGTGGGTAAAACATGTCTGCTGATCAGCTACACAACCAATGCTTTTCCCGGAGAATACATCCCCACAGTGTGAGTCTTCTTTGACAGtatcacagggctcgaaattgcaaccattttggtcgcatatgcgcccgaaattttatctatgcgaccataaaatatttttgggagcatttctgcgagtgcttaaaattgttgtgtgcgaccagtttttactgcaaaatgttcaccacatgcgcggattcgggagacattcacgcagaattcatctctaagctctttgtttgcACTTGGAAcgggaaacgcagcgctcaggaatggttttaaacagttgtcatgtcaacttgctgcagtaaacaaatccaagtccgtaatgcttgacccggcttcgcgctcttcttattggcccactgctctagcactgaacgcgaatgattggttaatatcagctgtcaatcactcagtcagcgccttctggcttcaGATGACaaagagagctactaccgcggaAAACTAAAGCGCTAAAGATGAGATTGAAGATAACacggacagatttagttttagaaaccatctagttacaaataatgacacatcttactagtgatcatgtgctgaatgttaatccaccatc

Function

symbol description
rac1b Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1).

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0043197 dendritic spine cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-45 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1).

Ensembl:

ensembl_id ENSDARG00000087954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050671 False 1415 mRNA 0.47 6 56574623 56594285
TCONS_00050672 True 813 lncRNA 0.45 2 56574659 56581029

Neighbor

gene id symbol gene type direction distance location
XLOC_025794 cacng5b coding upstream 180605 56366395 ~ 56394018 (+)
XLOC_025793 NA coding upstream 213973 56358682 ~ 56360650 (+)
XLOC_025792 prkcab coding upstream 232504 56163276 ~ 56342119 (+)
XLOC_025791 FP326652.1 coding upstream 466714 56099256 ~ 56107909 (+)
XLOC_025790 NA coding upstream 920359 55646873 ~ 55654264 (+)
XLOC_025796 CU019632.1 coding downstream 24910 56619195 ~ 56622872 (+)
XLOC_025797 CR759836.1 coding downstream 51425 56645710 ~ 56685946 (+)
XLOC_025798 rnf213a coding downstream 104902 56699187 ~ 56813923 (+)
XLOC_025799 NA coding downstream 227414 56821699 ~ 56822203 (+)
XLOC_025800 amn coding downstream 281995 56876280 ~ 56877918 (+)
XLOC_025429 BX649540.1 misc upstream 26325587 30248739 ~ 30249036 (+)
XLOC_025789 NA non-coding upstream 1086382 55482120 ~ 55488241 (+)
XLOC_025788 NA non-coding upstream 1186966 55386215 ~ 55387657 (+)
XLOC_025802 NA non-coding downstream 355670 56949955 ~ 56957558 (+)
XLOC_025806 NA non-coding downstream 831875 57426160 ~ 57480996 (+)
XLOC_025807 NA non-coding downstream 839976 57434261 ~ 57436304 (+)

Expression


Co-expression Network