LOC110529977 (LOC106568669)


Basic Information

Item Value
gene id LOC110529977
gene name LOC106568669
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47283739 ~ 47295308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612692.2
CCCGTTATTAAAATGCGAAAGTTGGTCTTGAAAGACAACTCGGCGTTTCATTGGTTGGTGAGCCGGCATTGGGACACGCGACAACGAGCTCATTCTTTCTTGTGAGTTTCCAACATCGTCGCAGCCGCGGGTGAACAGGAAAAAGACCGTTTAATTTTGTCGAGGTCAGCAGCAGCCATGCCTTCAGACCTGGCCAAGAAGAAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGCCagaagacaaaaaaaactgaggatggagagggagagaaaccagagGAAGGCCAGGAGAATGGAGCCATAAGCAACGGTGTGGAAAGCCTGACCAAGGAGATGGATGAGTTTGAGCTGAAGAAGACTGAGGCGCGGGCGGTGACTGGCGTGCTGGCTTCGCACCCCAACAGCACAGATGTGCACGTCACCAGCATGTCGCTCACCTTCCATGGGCAGGAGCTGCTGCAGGACACCAGCTTGGAGCTCAACTCGGGCCGCCGCTACGGCCTCATTGGCCTCAATGGCACTGGTAAATCCATGTTGCTGGCAGCCATTGGCCACCGTGAGGTACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGTCTCCCAGTGAGAAGACTGCCCTGCAGTGTGTCATGGAGGTGGATGCGGAAAGGATCCATCTGGAGAAGGAGGCAGAGCGCCTGGCATCCGAGGACTCCGAGTGTGAGAAGCTGATGGAGCTTTATGAGCGCCTGGAGGAGCTGGACGCAGATAAGGCTGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACTGCCTCCATGCAGCAGAAGAAGCTTAAGGACTTCAGCGGAGGCTGGAGAATGCGCGTTGCTCTGGCCAGGGCCCTGTTCTTGAAGCCGTTCATGTTGCTGCTGGATGAGCCCACCAACCACTTGGACCTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTCAAACGTATTCTGGTCCTGATCTCCCATTCGCAAGATTTCCTCAACGGCGTGTGCACCAACATCATGCACTTGCACGAACGCAAGCTGAAATACTACACGGGCAACTACGACCAGTACATTAAGACCAGGGAGGAGTTGGAAGAGAACCAGATGAAGCGGTTCAATTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGCTGGCTCGTCAAGCCCAGAGTAAAGAGAAGACTCTGCAGAAGATGGTGGCCTCGGGCCTGACTGAGAGTGTTAAGAATGACCAAACCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCTGTCATCATGGTCCAAAATGTCAGCTTCAAGTACTCTGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGTATCGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAGTCCACCCTGCTTAAACTCCTCATGGGAGAGCTCCTCCCCACTGATGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACAGAGCAGCTGGAACTTGACCTCTCCCCCCTGGATTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGCTATGGGCTGACAGGCAAACAGCAGGTGAACCCCATTAGAAACTTGTCCGACGGGCAGAAGTGCCGGGTGTGCTTTGCCTGGCTGGCCGGGCAGAACGCCCACATGCTCTTCTTGGACGAGCCCACCAATCACTTAGATATCGAGACCATCGATGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGCTGGTTAGCCATGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTGTGCGAAAAGCAAACCATCACCAAATGGAACCGGGACATCTTGGCTTACAAAGACCATTTGAAAAAGAAGATCGACAAAAATTCTCATGGTGTATAGAAAATTGAAATACCTCCCCAGATTCAAGACTGCACTGTCCCAAGACTGTGGACTCCCATTTTTCCCATTCCCTCTTCACGTGGCTATATAACTCGACGCATGTTACTCCATTTCAAGATGCCCAATTCCTCCTGCTTTTAATGCCTCTTTATAGGCTGCTGGAAGGTTGTGGTGCGACCTAGTTGCCTTCCAttgctactcccttcacaggcATACTTATGGTATCTTGATTtctcaattaaaataaataatttatccATCAATGTGGTAGAGAACGTGTGCATTTTTCCACAGTTCAGATATAGTAGGACGTTAGCCGCCTGTACCAATTTATTTCCTTTTACTCTAAAATAGCTTTTTATTATTTAACTGTACCTGCAATAATGGGATTGTATGAATAAAGGAGCAAAATAACT
>XM_021612691.2
ACCCGCCCGTTATTAAAATGCGAAAGTTGGTCTTGAAAGACAACTCGGCGTTTCATTGGTTGGTGAGCCGGCATTGGGACACGCGACAACGAGCTCATTCTTTCTTGTGAGTTTCCAACATCGTCGCAGCCGCGGGTGAACAGGAAAAAGACCGCTCTCTGTCTTCAAGTTTAATTTTGTCGAGGTCAGCAGCAGCCATGCCTTCAGACCTGGCCAAGAAGAAGGCGCAGAAGAAGAAGGAAGCCGCCAAATCCCGCCagaagacaaaaaaaactgaggatggagagggagagaaaccagagGAAGGCCAGGAGAATGGAGCCATAAGCAACGGTGTGGAAAGCCTGACCAAGGAGATGGATGAGTTTGAGCTGAAGAAGACTGAGGCGCGGGCGGTGACTGGCGTGCTGGCTTCGCACCCCAACAGCACAGATGTGCACGTCACCAGCATGTCGCTCACCTTCCATGGGCAGGAGCTGCTGCAGGACACCAGCTTGGAGCTCAACTCGGGCCGCCGCTACGGCCTCATTGGCCTCAATGGCACTGGTAAATCCATGTTGCTGGCAGCCATTGGCCACCGTGAGGTACCTATCCCAGAGCACATTGACATCTACCACCTGACCCGTGAGATGTCTCCCAGTGAGAAGACTGCCCTGCAGTGTGTCATGGAGGTGGATGCGGAAAGGATCCATCTGGAGAAGGAGGCAGAGCGCCTGGCATCCGAGGACTCCGAGTGTGAGAAGCTGATGGAGCTTTATGAGCGCCTGGAGGAGCTGGACGCAGATAAGGCTGAGGTGCGGGCCTCCCAGATCCTCCACGGCCTGGGCTTTACTGCCTCCATGCAGCAGAAGAAGCTTAAGGACTTCAGCGGAGGCTGGAGAATGCGCGTTGCTCTGGCCAGGGCCCTGTTCTTGAAGCCGTTCATGTTGCTGCTGGATGAGCCCACCAACCACTTGGACCTGGATGCCTGTGTGTGGCTGGAGGAAGAGCTTAGCCAATTCAAACGTATTCTGGTCCTGATCTCCCATTCGCAAGATTTCCTCAACGGCGTGTGCACCAACATCATGCACTTGCACGAACGCAAGCTGAAATACTACACGGGCAACTACGACCAGTACATTAAGACCAGGGAGGAGTTGGAAGAGAACCAGATGAAGCGGTTCAATTGGGAGCAGGACCAGATCAAACACATGAAGAACTACATAGCCCGGTTTGGGCACGGCTCAGCCAAGCTGGCTCGTCAAGCCCAGAGTAAAGAGAAGACTCTGCAGAAGATGGTGGCCTCGGGCCTGACTGAGAGTGTTAAGAATGACCAAACCCTGTCATTTTGTTTTCCTCCCTGTGGGAAGATTCCCCCTCCTGTCATCATGGTCCAAAATGTCAGCTTCAAGTACTCTGATGACCAGCCCCATATATACAAGAACCTTGAGTTCGGTATCGACCTCGACACCCGAGTGGCCCTTGTGGGGCCCAACGGGGCCGGGAAGTCCACCCTGCTTAAACTCCTCATGGGAGAGCTCCTCCCCACTGATGGTATGATCCGCAAGAACTCCCACGTCAAGATTGGCAGATATCACCAGCATCTAACAGAGCAGCTGGAACTTGACCTCTCCCCCCTGGATTACATGATGAAGTGTTACCCAGAGatcaaggagagggaggagatgaggaagatCATTGGCCGCTATGGGCTGACAGGCAAACAGCAGGTGAACCCCATTAGAAACTTGTCCGACGGGCAGAAGTGCCGGGTGTGCTTTGCCTGGCTGGCCGGGCAGAACGCCCACATGCTCTTCTTGGACGAGCCCACCAATCACTTAGATATCGAGACCATCGATGCCCTGGCCGACGCCATCAACGAGTACGAGGGCGGCATGATGCTGGTTAGCCATGACTTCAGGCTCATCCAGCAGGTGGCCCAGGAGATCTGGGTGTGCGAAAAGCAAACCATCACCAAATGGAACCGGGACATCTTGGCTTACAAAGACCATTTGAAAAAGAAGATCGACAAAAATTCTCATGGTGTATAGAAAATTGAAATACCTCCCCAGATTCAAGACTGCACTGTCCCAAGACTGTGGACTCCCATTTTTCCCATTCCCTCTTCACGTGGCTATATAACTCGACGCATGTTACTCCATTTCAAGATGCCCAATTCCTCCTGCTTTTAATGCCTCTTTATAGGCTGCTGGAAGGTTGTGGTGCGACCTAGTTGCCTTCCAttgctactcccttcacaggcATACTTATGGTATCTTGATTtctcaattaaaataaataatttatccATCAATGTGGTAGAGAACGTGTGCATTTTTCCACAGTTCAGATATAGTAGGACGTTAGCCGCCTGTACCAATTTATTTCCTTTTACTCTAAAATAGCTTTTTATTATTTAACTGTACCTGCAATAATGGGATTGTATGAATAAAGGAGCAAAATAACT

Function

NR:

description
ATP-binding cassette sub-family F member 2-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K06185 ABCF2; ATP-binding cassette, subfamily F, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612692.2 False 2426 mRNA 0.52 15 47283739 47295303
XM_021612691.2 True 2446 mRNA 0.52 15 47283739 47295308

Neighbor

gene id symbol gene type direction distance location
LOC110529976 LOC106568668 coding downstream 22887 47230087 ~ 47260852 (-)
LOC110529973 LOC106568664 coding downstream 215766 47051073 ~ 47067973 (-)
dnajc1 dnjc1 coding downstream 248377 47027194 ~ 47035362 (-)
nebl LOC106568663 coding downstream 256664 47015885 ~ 47027075 (-)
pex5lb LOC106568657 coding downstream 480570 46651828 ~ 46803169 (-)
LOC110529978 LOC106568670 coding upstream 2987 47298295 ~ 47303919 (-)
LOC110529981 LOC106568675 coding upstream 102475 47397783 ~ 47439942 (-)
LOC110529117 NA coding upstream 359744 47655052 ~ 47656068 (-)
LOC110529987 LOC106568679 coding upstream 431482 47726790 ~ 47894176 (-)
LOC110529989 LOC106568683 coding upstream 1034376 48329684 ~ 48343010 (-)
G714689 NA non-coding downstream 54446 47228767 ~ 47229293 (-)
G714440 LOC106562530 non-coding downstream 75394 47207979 ~ 47208345 (-)
G714435 NA non-coding downstream 80858 47202652 ~ 47202881 (-)
G714430 NA non-coding downstream 85395 47197656 ~ 47198344 (-)
G714764 NA non-coding upstream 56885 47352193 ~ 47388487 (-)
G714816 NA non-coding upstream 156149 47451457 ~ 47451848 (-)
G714823 NA non-coding upstream 170517 47465825 ~ 47466150 (-)
G714855 NA non-coding upstream 226472 47521780 ~ 47522040 (-)
G714876 NA non-coding upstream 237691 47532999 ~ 47533347 (-)
G714425 LOC106568665 other downstream 105003 47178424 ~ 47178736 (-)
crfb16 LOC106568648 other downstream 958058 46309732 ~ 46325685 (-)
G712814 NA other downstream 1825491 45457777 ~ 45458248 (-)
G711133 NA other downstream 2744235 44538793 ~ 44539504 (-)
G715865 NA other upstream 993634 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 1246983 48356004 ~ 48616588 (-)
G716463 LOC106591423 other upstream 1464604 48759912 ~ 48761163 (-)
G716480 tnk2 other upstream 1486813 48782121 ~ 48782515 (-)
G716488 NA other upstream 1493213 48788521 ~ 48788962 (-)

Expression


Co-expression Network