LOC110529979


Basic Information

Item Value
gene id LOC110529979
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47296663 ~ 47298281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474466.2
GAACACAGCAGATTCCCTCCTCCACAAGCTTTGACAGAAGAGACAAAATGCAGCGGGTATCATTGGCATTGGTCATTTTCACCATTGCAACAATTACAATCCAATCGGTGCCCATAGAAACAAGTGGTGAAATGATTGAGAAAATGCAACACGTCAGCATGAGCCAGTTTCGCAGGAGAAGGGGGACTGATGACTCATTCAAGAAACCCTCACGGTCCTGCTCTGGCTGCTACTCTGTCATAGGAGACCCCACTACGACATGATCATCCCGCTAGTGAGGAGCTGGTTTCACCTTTCCAGAGGACAAATCAACAAATGCGGAATCACCATAAACTCCACTCCAAAGAGCAAGAAGAAAATACTAAACCAAGGAACTATCCTCAAAGTAAATATCATCACTGGCACCCCCTGTTTTCTAAGACAAATGAATGACACTTTCATATGAATCGTGCATTGTATCGATGAACGCTGGCTGTGTCTTGTGGGAGCGCCTGTTGAAATGTCCTTTCCCCATCCTCATTTTGACTCATAAGGGCAAGAAGTACAATTTAGGCATGTCATTATCAATGACTTCAATTTAGAGCTTTACACATGCTGAGTCACAGCCTGcttaaaccagactgaatgctGTGCTAATGATTGTTTCACGTCATGTTGAGCACAAGTTTCAGTGTGGTTTAAGCAGGCCAGCTGAGTCATAGGCTGGTTGAGGCACAAGTGGTATTTTAAAAAATGAGTCATTGAAACCATGCCACAACTCCAAAACCATATTGGCTAAGTTTGAAACCAATtagcggttttaaccaatcagcatccagtatTGGACCCACCCCTTTGTACAAGCTTTGTTAATGTATCAACAAAGTAGTCTTATGTGCCATAACTGAAAGAAGTGTCCCCAAAAGGAAAATTCCAATCTAACCCCAGTCTATTTGAATAAAGAGGCCTAGTTGAAAAAA
>TU812133
AGCTTTGACAGAAGAGACAAAATGCAGCGGGTATCATTGGCATTGGTCATTTTCACCATTGCAACAATTACAATCCAATCGGTGCCCATAGAAACAAGTGGTGAAATGATTGAGAAAATGCAACACGTCAGCATGAGCCAGTTTCGCAGGAGAAGGGGGACTGATGACTCATTCAAGAAACCCTCACGGTCCTGCTCTGGCTGCTACTCTGTCATAGGAGACCCCACTACGACATGATCATCCCGCTAGTGAGGAGCTGGTTTCACCTTTCCAGAGGACAAATCAACAAATGCGGAATCACCATAAACTCCACTCCAAAGAGCAAGAAGAAAATACTAAACCAAGGAACTATCCTCAAAGTAAATATCATCACTGGCACCCCCTGTTTTCTAAGACAAATGAATGACACTTTCATATGAATCGTGCATTGTATCGATGAACGCTGGCTGTGTCTTGTGGGAGCGCCTGTTGAAATGTCCTTTCCCCATCCTCATTTTGACTCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474466.2 False 959 mRNA 0.43 3 47296663 47298281
TU812133 True 506 lncRNA 0.45 3 47296689 47297854

Neighbor

gene id symbol gene type direction distance location
LOC110529975 LOC106568666 coding upstream 67328 47209551 ~ 47229335 (+)
LOC110529974 LOC106568665 coding upstream 102103 47140657 ~ 47194560 (+)
LOC110529969 LOC106568662 coding upstream 292333 46978079 ~ 47004330 (+)
LOC110529116 LOC106597230 coding upstream 339722 46954120 ~ 46956941 (+)
LOC110529968 LOC106568661 coding upstream 364762 46916145 ~ 46931901 (+)
ccr9a ccr9 coding downstream 49220 47347501 ~ 47380974 (+)
si:dkey-154p10.3 LOC106568677 coding downstream 141852 47440133 ~ 47452536 (+)
LOC110529986 LOC106568678 coding downstream 170199 47468480 ~ 47506234 (+)
si:dkey-181m9.8 LOC106568680 coding downstream 847509 48145790 ~ 48162546 (+)
tnk2b tnk2 coding downstream 1380532 48678813 ~ 48806257 (+)
G714468 NA non-coding upstream 44441 47251818 ~ 47252222 (+)
G714467 NA non-coding upstream 46246 47250075 ~ 47250417 (+)
G714466 NA non-coding upstream 46626 47249811 ~ 47250037 (+)
G714464 LOC106568668 non-coding upstream 48460 47247397 ~ 47248203 (+)
G714463 LOC106568668 non-coding upstream 49597 47246774 ~ 47247066 (+)
G714624 NA non-coding downstream 158132 47456413 ~ 47456701 (+)
G714626 LOC100194703 non-coding downstream 160922 47459203 ~ 47459493 (+)
G714628 NA non-coding downstream 162425 47460706 ~ 47461046 (+)
G714636 NA non-coding downstream 208053 47506334 ~ 47506918 (+)
G714663 NA non-coding downstream 212572 47510853 ~ 47511102 (+)
G713574 NA other upstream 527417 46715915 ~ 46769246 (+)
G713405 NA other upstream 830436 46465398 ~ 46466227 (+)
G711912 NA other upstream 1502114 45793269 ~ 45794549 (+)
G711845 NA other upstream 1649286 45646857 ~ 45647377 (+)
G711021 NA other upstream 2847690 44448584 ~ 44448973 (+)
G716035 LOC106581475 other downstream 1239462 48537743 ~ 48544164 (+)
G716133 NA other downstream 1462062 48760343 ~ 48760740 (+)
G716862 NA other downstream 2034560 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 2247931 49546212 ~ 49547085 (+)
LOC118965615 NA other downstream 2555106 49853027 ~ 49854435 (+)

Expression


Co-expression Network