LOC110529978 (LOC106568670)


Basic Information

Item Value
gene id LOC110529978
gene name LOC106568670
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47298295 ~ 47303919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985517.1
TTCCAGAAGCCCAGGCTGCAATAAAGAGCCATGCGCCCAGGGACACGGGCTGTTTGACACCACAGGCCACCCAACATATTCTCAAGCCACTCAATGATGTCTATGCATGGTGACTAGCCTTCTTCTGACACGCACACGCTCCCGCATTCTCTCGTCTCATACCCACATTCTCCAAGTACAAGGGCCATGCCTCTGCCAAGACGTCGGTCCTCCTTCTTGGACCAGCACTCCGCTGCAGAGCGCCCCGGTAGCGCCAGCACCAGGGCTGGCACCGCGGGCATCACCACAGCCCCCCGGGGCGTCTTTGTGGGGACAGCCCCCACGGGCGGCACCTGCAACCTGGGCACGCGAGTGTCGCGGCGTGCCCTGGGCATCAGCAGTGTGTTCCTGCAGGGGCTGAGGAGCACGGCTGTGCCTGTTATGCCCcatggggctggggctggtggCAGGCAGCACCCCGGGGGTGCTGAGAGCCTTAACTGCTGCCTGATGGAGTACAGGGACAAGGTGCACGCCCTGGAGCTGCTCAACCAGCAGCTGGAGGAGCAGATCCGACACTGCCTGGATCGTAAGGCGTCCAGTGCCGGAGCCTGGGGTCCCCTCAGACAGGACTGGGAGGACGTCTACAGGCAGGTTAGTGAGTCCATCCTTGACAATGCCAGGCTAATGCTGCAGACAGAGAATGTGCAGGCCAATGCTGAGGACTTCAAGGACCGGTATGAGAATGAGCAGCCCTTCAGGAAAGCGGTTGAGGAGGAGATCAGCTCTCTGTACAAGGTGATTGACGATGCCAACCTGACCAAGTCAGACCTGGAGAGCCAGATGGACAGCATGAGGGCTGAGCTCCGAGACCTGGCCCGCAACCACGAGGAGGACGTGAGGGTGCTATACAACCAGATGGCAGGCCGTGAGGTGGACGAACCGGATGCCCCCATTGAGACCAATCTGGACCAGATACTGGCCTACATCCGCTCCCACTGGGAAAGAGTCATCGAGAAGAACCGTGCCGAGACCGATGCCTACCTGGAATACAAGcaggAGGAGAGTGTCGGCAGTAAGCTGAGTcatgaggaggaggagctggagtGTCTGAAGACGGAGTATAACGATGCTGGTTGTAAAATCCAGAGTTTGCAGGCCGAAACCGAGTCCATCAGAGCACTGAAGCGCGGCCTGGAGAACTCCCTGAACGACGCCAAGCATTGGCATGACATCGAGTTGCAGAACCTGGGATCCGTCATTGGCAAGCTGGAGTCAGAGCTGGGCGACGTCCATGGCGACATTGAACAGCAACGCCGTGACTATGAGACGTTGCTGGGCAACAAAATGCGCCTGGAGCTGGAGATCGGCACCTACCACGGCATCTTGGATGGGGAGGAGAGCCGCTACCACCCCTCGATGTGCACAGGTGCATCAGAGCCTGAAGGGAGACGAACTCCCCTTCCTCCCCATTTGGAGCCCCACGGCGGCCCAGCACCTCAAGGTTTCAACACATCTAGTTACTAGTGGAAAGACTGAGGACCATTTGGGGACAAGGCCACTTCTTAATTTTGGTGCTCAAGTTATCATCGACTGTCCTTGGGTTTGGAATAACACCAATGAACATGAAGCTCTCACACCGTTGATCTCCAAGGTATCTGTGCAGTTTCCTTCAGAGACCATGTTCTTACTAAAGAGTGTAATAAAATTGAAACCTCTGCAAGAAA
>XM_036985518.1
AACAATAAGCCCCTCTGCTTTCCAGAAGCCCAGGCTGCAATAAAGAGCCATGCGCCCAGGGACACGGGCTGTTTGACACCACAGGCCACCCAACATATTCTCAAGCCACTCAATGATGTCTATGCATGGTGACTAGCCTTCTTCTGACACGCACACGCTCCCGCATTCTCTCGTCTCATACCCACATTCTCCAAGTACAAGGGCCATGCCTCTGCCAAGACGTCGGTCCTCCTTCTTGGACCAGCACTCCGCTGCAGAGCGCCCCGGTAGCGCCAGCACCAGGGCTGGCACCGCGGGCATCACCACAGCCCCCCGGGGCGTCTTTGTGGGGACAGCCCCCACGGGCGGCACCTGCAACCTGGGCACGCGAGTGTCGCGGCGTGCCCTGGGCATCAGCAGTGTGTTCCTGCAGGGGCTGAGGAGCACGGCTGTGCCTGTTATGCCCcatggggctggggctggtggCAGGCAGCACCCCGGGGGTGCTGAGAGCCTTAACTGCTGCCTGATGGAGTACAGGGACAAGGTGCACGCCCTGGAGCTGCTCAACCAGCAGCTGGAGGAGCAGATCCGACACTGCCTGGATCGTAAGGCGTCCAGTGCCGGAGCCTGGGGTCCCCTCAGACAGGACTGGGAGGACGTCTACAGGCAGGTTAGTGAGTCCATCCTTGACAATGCCAGGCTAATGCTGCAGACAGAGAATGTGCAGGCCAATGCTGAGGACTTCAAGGACCGGTATGAGAATGAGCAGCCCTTCAGGAAAGCGGTTGAGGAGGAGATCAGCTCTCTGTACAAGGTGATTGACGATGCCAACCTGACCAAGTCAGACCTGGAGAGCCAGATGGACAGCATGAGGGCTGAGCTCCGAGACCTGGCCCGCAACCACGAGGAGGACGTGAGGGTGCTATACAACCAGATGGCAGGCCGTGAGGTGGACGAACCGGATGCCCCCATTGAGACCAATCTGGACCAGATACTGGCCTACATCCGCTCCCACTGGGAAAGAGTCATCGAGAAGAACCGTGCCGAGACCGATGCCTACCTGGAATACAAGgAGGAGAGTGTCGGCAGTAAGCTGAGTcatgaggaggaggagctggagtGTCTGAAGACGGAGTATAACGATGCTGGTTGTAAAATCCAGAGTTTGCAGGCCGAAACCGAGTCCATCAGAGCACTGAAGCGCGGCCTGGAGAACTCCCTGAACGACGCCAAGCATTGGCATGACATCGAGTTGCAGAACCTGGGATCCGTCATTGGCAAGCTGGAGTCAGAGCTGGGCGACGTCCATGGCGACATTGAACAGCAACGCCGTGACTATGAGACGTTGCTGGGCAACAAAATGCGCCTGGAGCTGGAGATCGGCACCTACCACGGCATCTTGGATGGGGAGGAGAGCCGCTACCACCCCTCGATGTGCACAGGTGCATCAGAGCCTGAAGGGAGACGAACTCCCCTTCCTCCCCATTTGGAGCCCCACGGCGGCCCAGCACCTCAAGGTTTCAACACATCTAGTTACTAGTGGAAAGACTGAGGACCATTTGGGGACAAGGCCACTTCTTAATTTTGGTGCTCAAGTTATCATCGACTGTCCTTGGGTTTGGAATAACACCAATGAACATGAAGCTCTCACACCGTTGATCTCCAAGGTATCTGTGCAGTTTCCTTCAGAGACCATGTTCTTACTAAAGAGTGTAATAAAATTGAAACCTCTGCAAGAAA

Function

NR:

description
phakinin-like

GO:

id name namespace
GO:0045104 intermediate filament cytoskeleton organization biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K10379 BFSP2; phakinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985517.1 False 1706 mRNA 0.57 8 47298295 47303900
XM_036985518.1 True 1722 mRNA 0.57 8 47298295 47303919

Neighbor

gene id symbol gene type direction distance location
LOC110529977 LOC106568669 coding downstream 2987 47283739 ~ 47295308 (-)
LOC110529976 LOC106568668 coding downstream 37443 47230087 ~ 47260852 (-)
LOC110529973 LOC106568664 coding downstream 230322 47051073 ~ 47067973 (-)
dnajc1 dnjc1 coding downstream 262933 47027194 ~ 47035362 (-)
nebl LOC106568663 coding downstream 271220 47015885 ~ 47027075 (-)
LOC110529981 LOC106568675 coding upstream 93864 47397783 ~ 47439942 (-)
LOC110529117 NA coding upstream 351133 47655052 ~ 47656068 (-)
LOC110529987 LOC106568679 coding upstream 422871 47726790 ~ 47894176 (-)
LOC110529989 LOC106568683 coding upstream 1025765 48329684 ~ 48343010 (-)
dlg1l LOC106568684 coding upstream 1052085 48356004 ~ 48616588 (-)
G714689 NA non-coding downstream 69002 47228767 ~ 47229293 (-)
G714440 LOC106562530 non-coding downstream 89950 47207979 ~ 47208345 (-)
G714435 NA non-coding downstream 95414 47202652 ~ 47202881 (-)
G714430 NA non-coding downstream 99951 47197656 ~ 47198344 (-)
G714764 NA non-coding upstream 48274 47352193 ~ 47388487 (-)
G714816 NA non-coding upstream 147538 47451457 ~ 47451848 (-)
G714823 NA non-coding upstream 161906 47465825 ~ 47466150 (-)
G714855 NA non-coding upstream 217861 47521780 ~ 47522040 (-)
G714876 NA non-coding upstream 229080 47532999 ~ 47533347 (-)
G714425 LOC106568665 other downstream 119559 47178424 ~ 47178736 (-)
crfb16 LOC106568648 other downstream 972614 46309732 ~ 46325685 (-)
G712814 NA other downstream 1840047 45457777 ~ 45458248 (-)
G711133 NA other downstream 2758791 44538793 ~ 44539504 (-)
G715865 NA other upstream 985023 48288942 ~ 48289581 (-)
G716463 LOC106591423 other upstream 1455993 48759912 ~ 48761163 (-)
G716480 tnk2 other upstream 1478202 48782121 ~ 48782515 (-)
G716488 NA other upstream 1484602 48788521 ~ 48788962 (-)

Expression


Co-expression Network