ccr9a (ccr9)


Basic Information

Item Value
gene id ccr9a
gene name ccr9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47347501 ~ 47380974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984527.1
ttccagtcattactAACGCAGAGGAGAGGGCCATCACTCCTAGAAACCCGACTATCTTACCTGGTTCCCCAAATTCCACCTCAATACCTCGCTTCGTCAGCAGCCACCCTACACAGCAGCGAATGACAACCTCCCACCATTTGTGAGTGCAAACTGGTTAATTGCGAGGGCTACGAAACCCCATGTTCATCAGAGAACCAGCTCCCCCACATCCCCTTGCCTGCTCTCTCAGCTCTGAAACGAAATTTCCAGAGTCTTCCTGCAGTTGGCAAGCACACACAGAACATGTCCCCGGAGCAGAACTTTGCGGAAGCTCAGTCCTAGTTCAACATGGGTGTGGCAGGGTACCATGCTCAGATCTCCAACTTGACGTTGGCCATTGAAGTGTCTAAAACTGACCTCCACAACCAGATCCTGGACTACCATGAGTCTCTGGACATTAAGCTGGCTCTGGACGTGGAGGTCTCAACCAACAACCTGCTGGAAGGAGACGATCTCAAATGCCAATTATAGGTGACTTGGTGACTTCACCAATGGCTTCAGAGGTGTATGACTATGACTCCAGCTTCACCCCCACGGCTGGTGAGGACGATCTGGAAGACTTTATGTGCGACAAATCTCCCGTCAGGGCATTCCGAGGCCAGTACGAACCCCCTCTCTACTGGACCATCATCATCCTGGGCGGCCTGGGCAACCTGACCGTGGTTTGGATCTACCTGCACTTCCGCCAGCGTCTCAAGACCATGACCGATGTCTACCTGTTGAACCTAGCTGTGGCCGACCTCTTCTTCCTGGGCACTCTGCCCCTCTGGGCCGTGGAGGCCACCCAGGGATGGAACTTCAGCTCGGGTCTCTGCAAGGTCACCTCAGCCCTCTACAAGATCAACTTCTTCAGCAGCATGCTGCTGCTCACCTGCATCAGCGTTGATCGCTACGTGGTCATCGTCCAGACCACCATGGCCCAGAACTCCAAGAGACAGCGCCTGAGCTGCAGCAAATTGGTGTGCGCCTGCGTCTGGCTACTGGCCGTGGCTTTGGCCCTGCCTGAGTTCATGTTCGCCAATGTCAAGAATCTGGAGGGCCGGGGCTACTGCACCATGGTCTACTGGAGTAACCAGGACAACCGCACCAAGATCATGGTCCTGGGGCTTCAGATCTGCATGGGCTTCTGCCTGCCCCTGCTGGTCATGGTGTTCTGCTACGCCGGCATCATCCGCACCCTGCTCAAAACCCGCAGCTTCCAGAAACACAAGGCGTTGCGCGTGATCCTGGTGGTGGTGGCTGTGTTTGTCCTCTCCCAGTTGCCGTACAACAGCGTGCTGGTGATGGAGGCCACCCAGGCGGCCAACAGCACTCAGACAGACTGCAGTGCGGCAAAGCGGTTCAATGTGGTCAGCCAGGTGCTGAAGAGCCTGGCTTACACGCACGCCTGCCTCAATCCCTTCCTGTATGTGTTTGTGGGCGTACGCTTCCGCAGAGACATCCTCAAGCTTCTCCGCATCTACCACTGCTGGCCGGCCAAGGGGAAACTCCGCAAGATCCAGGGAGGCCCCGGGCGCTCCTCAGTTATGTCAGACACGGACACCACACAAGCACTCTCGCTTTGAAGGCACGGTCATAGTACAACCTTTCACTTGCGACCAGAAGTCCCTCATAATAATTGAGGTCTGTACAAACTTGTTTGCATACATGCTCTCTATTCCATGATGCAGAGGTTGTAATGTTTTTTCCCCCCCGGTTGCCCACTCTTGCATTAGACTTTTATCTTCTTTGGTTATCCGACCATTGCTGAGGCTGAGGCAGTGACATGGGGAAGGAAGAGGTCCCTTTCTGAGAGCTGGGGGAATGTCGACAAAGACGTCTTGGGTACATTGCTAGAAGCGTTGGTTATGATGAGACTCTTCTTTGGCTGGTCCAAAGACCTTCTCATTTTTCCTAGTGACTTCTCAATTTTGCTGGATGGACATTCACAGTCTGGTTGGGGGTTTGTGTTTCACGATGCCAGGGATTGGAAAGAGCTAACCATGACAACATTTGTCCTGTACTGGTCTAATGCATTTGCAGTGGTCTATAATGTTCTGCCAATTCAGCCATGTTGTTTTCGTGTCTTTTTTTTGTGCATTTGTTCAGAAAgcagagagatgggaaagagaagACACCTCTTTTCTTTGCAATGATGGATtttgtgacagcatgggcagcgccattgtggactatctccattttaaagtttATTAGCAGTTTGTAAACAAACGGAAAAGGTCCATACCATCCCCTACTGTGCTGGATTGTGTATAGTCTGAAAACGTGTAACGCTCTGCCGCTTTTTTGGCAAGTGtaccctctatccatctctatgttatggatattatttgtATCAATTTCTTTGTCAGGAGCATATCAATAAACTTATACATTCTTTGAAATACTTTCTAAGTAGGAAATACCATATTTGTGATGAGTATGTTAAGCATTCACAGTGAGAGTGAAATTGTCATAAACAAAAAGTTGTATAAAATGCCTATGATGCCTATGATGTTCACAATGACAATTCTCAACATAATCATTGTAAATATACCCATGTCTTTAAAACAATTTAGGTCACTGTTATTGTGTCTCAAATGTGCATTAAGAAATAAACATCTACAGTCCCTCACAAA
>XM_036984526.1
TTTCTTCAGATTAATATAGCTAAATATTGTGGTGTAGTGTTCAtaatctccctcccctcccttctttcCATTGCTTTCCTGTTCTtctttcttctccctcctctttcaaTTCCTGTCCCCTTTCATtaccctcttttcctctccttttccctgtCTCCCTTAatctttctcactcctttatcCCCCTAACCTACTCTGCCCTGAATCCCCACCCTCacactcctccattcctctgctctctctctaccctactctcCAGAACATGTCCCCGGAGCAGAACTTTGCGGAAGCTCAGTCCTAGTTCAACATGGGTGTGGCAGGGTACCATGCTCAGATCTCCAACTTGACGTTGGCCATTGAAGTGTCTAAAACTGACCTCCACAACCAGATCCTGGACTACCATGAGTCTCTGGACATTAAGCTGGCTCTGGACGTGGAGGTCTCAACCAACAACCTGCTGGAAGGAGACGATCTCAAATGCCAATTATAGGTGACTTGGTGACTTCACCAATGGCTTCAGAGGTGTATGACTATGACTCCAGCTTCACCCCCACGGCTGGTGAGGACGATCTGGAAGACTTTATGTGCGACAAATCTCCCGTCAGGGCATTCCGAGGCCAGTACGAACCCCCTCTCTACTGGACCATCATCATCCTGGGCGGCCTGGGCAACCTGACCGTGGTTTGGATCTACCTGCACTTCCGCCAGCGTCTCAAGACCATGACCGATGTCTACCTGTTGAACCTAGCTGTGGCCGACCTCTTCTTCCTGGGCACTCTGCCCCTCTGGGCCGTGGAGGCCACCCAGGGATGGAACTTCAGCTCGGGTCTCTGCAAGGTCACCTCAGCCCTCTACAAGATCAACTTCTTCAGCAGCATGCTGCTGCTCACCTGCATCAGCGTTGATCGCTACGTGGTCATCGTCCAGACCACCATGGCCCAGAACTCCAAGAGACAGCGCCTGAGCTGCAGCAAATTGGTGTGCGCCTGCGTCTGGCTACTGGCCGTGGCTTTGGCCCTGCCTGAGTTCATGTTCGCCAATGTCAAGAATCTGGAGGGCCGGGGCTACTGCACCATGGTCTACTGGAGTAACCAGGACAACCGCACCAAGATCATGGTCCTGGGGCTTCAGATCTGCATGGGCTTCTGCCTGCCCCTGCTGGTCATGGTGTTCTGCTACGCCGGCATCATCCGCACCCTGCTCAAAACCCGCAGCTTCCAGAAACACAAGGCGTTGCGCGTGATCCTGGTGGTGGTGGCTGTGTTTGTCCTCTCCCAGTTGCCGTACAACAGCGTGCTGGTGATGGAGGCCACCCAGGCGGCCAACAGCACTCAGACAGACTGCAGTGCGGCAAAGCGGTTCAATGTGGTCAGCCAGGTGCTGAAGAGCCTGGCTTACACGCACGCCTGCCTCAATCCCTTCCTGTATGTGTTTGTGGGCGTACGCTTCCGCAGAGACATCCTCAAGCTTCTCCGCATCTACCACTGCTGGCCGGCCAAGGGGAAACTCCGCAAGATCCAGGGAGGCCCCGGGCGCTCCTCAGTTATGTCAGACACGGACACCACACAAGCACTCTCGCTTTGAAGGCACGGTCATAGTACAACCTTTCACTTGCGACCAGAAGTCCCTCATAATAATTGAGGTCTGTACAAACTTGTTTGCATACATGCTCTCTATTCCATGATGCAGAGGTTGTAATGTTTTTTCCCCCCCGGTTGCCCACTCTTGCATTAGACTTTTATCTTCTTTGGTTATCCGACCATTGCTGAGGCTGAGGCAGTGACATGGGGAAGGAAGAGGTCCCTTTCTGAGAGCTGGGGGAATGTCGACAAAGACGTCTTGGGTACATTGCTAGAAGCGTTGGTTATGATGAGACTCTTCTTTGGCTGGTCCAAAGACCTTCTCATTTTTCCTAGTGACTTCTCAATTTTGCTGGATGGACATTCACAGTCTGGTTGGGGGTTTGTGTTTCACGATGCCAGGGATTGGAAAGAGCTAACCATGACAACATTTGTCCTGTACTGGTCTAATGCATTTGCAGTGGTCTATAATGTTCTGCCAATTCAGCCATGTTGTTTTCGTGTCTTTTTTTTGTGCATTTGTTCAGAAAgcagagagatgggaaagagaagACACCTCTTTTCTTTGCAATGATGGATtttgtgacagcatgggcagcgccattgtggactatctccattttaaagtttATTAGCAGTTTGTAAACAAACGGAAAAGGTCCATACCATCCCCTACTGTGCTGGATTGTGTATAGTCTGAAAACGTGTAACGCTCTGCCGCTTTTTTGGCAAGTGtaccctctatccatctctatgttatggatattatttgtATCAATTTCTTTGTCAGGAGCATATCAATAAACTTATACATTCTTTGAAATACTTTCTAAGTAGGAAATACCATATTTGTGATGAGTATGTTAAGCATTCACAGTGAGAGTGAAATTGTCATAAACAAAAAGTTGTATAAAATGCCTATGATGCCTATGATGTTCACAATGACAATTCTCAACATAATCATTGTAAATATACCCATGTCTTTAAAACAATTTAGGTCACTGTTATTGTGTCTCAAATGTGCATTAAGAAATAAACATCTACAGTCCCTCACAAA
>NM_001124610.2
AAGCAACTTAGCGATAAGGAAGCGACCAACAAGCATTTTGATTTCAAGCGCCTGATTGACATCTCACTCACAATAGCAGAGAACGACAATGCCAATTATAGGTGACTTGGTGACTTCACCAATGGCTTCAGAGGTGTATGACTATGACTCCAGCTTCACCCCCACGGCTGGTGAGGACGATCTGGAAGACTTTATGTGCGACAAATCTCCCGTCAGGGCATTCCGAGGCCAGTACGAACCCCCTCTCTACTGGACCATCATCATCCTGGGCGGCCTGGGCAACCTGACCGTGGTTTGGATCTACCTGCACTTCCGCCAGCGTCTCAAGACCATGACCGATGTCTACCTGTTGAACCTAGCTGTGGCCGACCTCTTCTTCCTGGGCACTCTGCCCCTCTGGGCCGTGGAGGCCACCCAGGGATGGAACTTCAGCTCGGGTCTCTGCAAGGTCACCTCAGCCCTCTACAAGATCAACTTCTTCAGCAGCATGCTGCTGCTCACCTGCATCAGCGTTGATCGCTACGTGGTCATCGTCCAGACCACCATGGCCCAGAACTCCAAGAGACAGCGCCTGAGCTGCAGCAAATTGGTGTGCGCCTGCGTCTGGCTACTGGCCGTGGCTTTGGCCCTGCCTGAGTTCATGTTCGCCAATGTCAAGAATCTGGAGGGCCGGGGCTACTGCACCATGGTCTACTGGAGTAACCAGGACAACCGCACCAAGATCATGGTCCTGGGGCTTCAGATCTGCATGGGCTTCTGCCTGCCCCTGCTGGTCATGGTGTTCTGCTACGCCGGCATCATCCGCACCCTGCTCAAAACCCGCAGCTTCCAGAAACACAAGGCGTTGCGCGTGATCCTGGTGGTGGTGGCTGTGTTTGTCCTCTCCCAGTTGCCGTACAACAGCGTGCTGGTGATGGAGGCCACCCAGGCGGCCAACAGCACTCAGACAGACTGCAGTGCGGCAAAGCGGTTCAATGTGGTCAGCCAGGTGCTGAAGAGCCTGGCTTACACGCACGCCTGCCTCAATCCCTTCCTGTATGTGTTTGTGGGCGTACGCTTCCGCAGAGACATCCTCAAGCTTCTCCGCATCTACCACTGCTGGCCGGCCAAGGGGAAACTCCGCAAGATCCAGGGAGGCCCCGGGCGCTCCTCAGTTATGTCAGACACGGACACCACACAAGCACTCTCGCTTTGAAGGCACGGTCATAGTACAACCTTTCACTTGCGACCAGAAGTCCCTCATAATAATTGAGGTCTGTACAAACTTGTTTGCATACATGCTCTCTATTCCATGATGCAGAGGTTGTAATGTTTTTTCCCCCCCGGTTGCCCACTCTTGCATTAGACTTTTATCTTCTTTGGTTATCCGACCATTGCTGAGGCTGAGGCAGTGACATGGGGAAGGAAGAGGTCCCTTTCTGAGAGCTGGGGGAATGTCGACAAAGACGTCTTGGGTACATTGCTAGAAGCGTTGGTTATGATGAGACTCTTCTTTGGCTGGTCCAAAGACCTTCTCATTTTTCCTAGTGACTTCTCAATTTTGCTGGATGGACATTCACAGTCTGGTTGGGGGTTTGTGTTTCACGATGCCAGGGATTGGAAAGAGCTAACCATGACAACATTTGTCCTGTACTGGTCTAATGCATTTGCAGTGGTCTATAATGTTCTGCCAATTCAGCCATGTTGTTTTCGTGTCTTTTTTTTGTGCATTTGTTCAGAAAgcagagagatgggaaagagaagACACCTCTTTTCTTTGCAATGATGGATtttgtgacagcatgggcagcgccattgtggactatctccattttaaagtttATTAGCAGTTTGTAAACAAACGGAAAAGGTCCATACCATCCCCTACTGTGCTGGATTGTGTATAGTCTGAAAACGTGTAACGCTCTGCCGCTTTTTTGGCAAGTGtaccctctatccatctctatgttatggatattatttgtATCAATTTCTTTGTCAGGAGCATATCAATAAACTTATACATTCTTTGAAATACTTTCTAAGTAGGAAATACCATATTTGTGATGAGTATGTTAAGCATTCACAGTGAGAGTGAAATTGTCATAAACAAAAAGTTGTATAAAATGCCTATGATGCCTATGATGTTCACAATGACAATTCTCAACATAATCATTGTAAATATACCCATGTCTTTAAAACAA

Function

symbol description
ccr9 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within CD8-positive, gamma-delta intraepithelial T cell differentiation and chemotaxis. Located in cell surface. Biomarker of asthma.

NR:

description
C-C chemokine receptor type 9-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984527.1 False 2660 mRNA 0.50 4 47347501 47380974
XM_036984526.1 False 2637 mRNA 0.49 3 47347840 47380974
NM_001124610.2 True 2183 mRNA 0.49 3 47377944 47380909

Neighbor

gene id symbol gene type direction distance location
LOC110529979 NA coding upstream 49220 47296663 ~ 47298281 (+)
LOC110529975 LOC106568666 coding upstream 118166 47209551 ~ 47229335 (+)
LOC110529974 LOC106568665 coding upstream 152941 47140657 ~ 47194560 (+)
LOC110529969 LOC106568662 coding upstream 343171 46978079 ~ 47004330 (+)
LOC110529116 LOC106597230 coding upstream 390560 46954120 ~ 46956941 (+)
si:dkey-154p10.3 LOC106568677 coding downstream 59159 47440133 ~ 47452536 (+)
LOC110529986 LOC106568678 coding downstream 87506 47468480 ~ 47506234 (+)
si:dkey-181m9.8 LOC106568680 coding downstream 764816 48145790 ~ 48162546 (+)
tnk2b tnk2 coding downstream 1297839 48678813 ~ 48806257 (+)
LOC110530923 LOC106568690 coding downstream 1521963 48902937 ~ 48931678 (+)
G714468 NA non-coding upstream 95279 47251818 ~ 47252222 (+)
G714467 NA non-coding upstream 97084 47250075 ~ 47250417 (+)
G714466 NA non-coding upstream 97464 47249811 ~ 47250037 (+)
G714464 LOC106568668 non-coding upstream 99298 47247397 ~ 47248203 (+)
G714624 NA non-coding downstream 75439 47456413 ~ 47456701 (+)
G714626 LOC100194703 non-coding downstream 78229 47459203 ~ 47459493 (+)
G714628 NA non-coding downstream 79732 47460706 ~ 47461046 (+)
G714636 NA non-coding downstream 125360 47506334 ~ 47506918 (+)
G714663 NA non-coding downstream 129879 47510853 ~ 47511102 (+)
G713574 NA other upstream 578255 46715915 ~ 46769246 (+)
G713405 NA other upstream 881274 46465398 ~ 46466227 (+)
G711912 NA other upstream 1552952 45793269 ~ 45794549 (+)
G711845 NA other upstream 1700124 45646857 ~ 45647377 (+)
G711021 NA other upstream 2898528 44448584 ~ 44448973 (+)
G716035 LOC106581475 other downstream 1156769 48537743 ~ 48544164 (+)
G716133 NA other downstream 1379369 48760343 ~ 48760740 (+)
G716862 NA other downstream 1951867 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 2165238 49546212 ~ 49547085 (+)
LOC118965615 NA other downstream 2472413 49853027 ~ 49854435 (+)

Expression


Co-expression Network