LOC110529986 (LOC106568678)


Basic Information

Item Value
gene id LOC110529986
gene name LOC106568678
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47468480 ~ 47506234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612702.2
ACTCTGACAGACTGTTCCAGGATTTGTTTGTGGCCTTGTTGCTCAACAATCTAAGCGCAGCAGACAAACGGCAGCGGAGAAACCGAACCGGATCAGTGCTTCACTAGTGAAATCGCTGATTGATTATTTATTGGATAAATCATTGCGTGAAAATTATGGAAAATAAAAAGTTTGTCGTCTTGTGTACAGTTTCTTTGACGTTTTTGTTGAGTATAGCTACGGTTTCAGCCTTCGTTGAAGAGCTCGATGACACGTTTAAAGACACACGAATGCCTGATGAGATATGGCTTATACAATTCTACGCTCCCTGGTGTACCTATTGCAAGCAGCTGGACCCAGTGTGGTATGAAATCGGGGCTGAGCTGAAAAGTATGGGGTCTCCAGTCAACGTGGGCAAGGTCGACGCCACAGCCCACACCAATTTTGCAAAAGAGTTTCGAGTTGGAGGCTATCCCGCTATAAAGTTGTTGAAGGATGACTTGAAATACAACTACAGAGGTCCTAGAACCAAGGATGGCATAATGGAGTTTGCAGACAGAGTATCTGGACCTGTGGTGAGAGCACTGCCAAGTCAGCAGTTATTTCAGAATGTTATGAGTAGACATGATGTTCTCTTTGTATACGTTGGTGGACCGTCCGACTTGAAGGAGAAGTACATATCTGTGGCCAAGGAACTGATTGTGCATACTTACTTCTTCTCTGCTGCAAGGAACATTTTACCCAAGGCAGTTACTCTCAAGGAATACCCGGCTGTGGCAGTGTTCAAGGATGGCACTTACTTCCTTTATGATGAACAACATGATGGGGACCTCGCATCCTGGATCAATAGTGAACGATTCCTTAATTACCTCCAGATTGACAGCTACACTTTGTATGAAATGGGAGATACAAGCAAACTGGTGGCTCTGGCTATAGTGGATGAGAGAAACCCTACTGAGGAGAGCATCCGTTACAAGACCATGGTGGAAAGAGTGGCAAGTGAATACAAGGACCTCTATAGCAAAGAATTCCAGTTTGGTCACATGGACGGAAACGAGTACATCAATGGCCTCATCATGGAAGAACTGGCCATGCCCTCTATTATCGTGCTCAACGTGTCTAACGATGGATATTTCCTACCGCCCAACAAAGTGGAGACAAAGGAACAGCTGGTGAAGTTCATCGATGGAGTGTCGAAGGGCCGGATTAAATCCCAGGGAGGGAATGGATACTATCAATGCTTTATAAGGATTGCGTTCAACACCAAAACGACTGTTACAaataTATTTACCAATGCGCCCCTTTTGGGCGCCTTCCTCGTCGTTGTTTTCTGCGGCGGCGGAAGTGCCTTGTGTTACGGTCTATGCATGGCCTGGCGCTCAATGAGAAACACAGAGTCgatgagagacacagaggacGAGGAACCAATAACTGGGGAGAGGGTGGAGCCAAAGCAGCTCAAAGGTCCTGGGGAAGACAAGAAGACTGAGACGAAAGTGAAGAATCCGGCAGAAAAGAAGGCCGATTAAGTATGAAGTGGTATGAAGTGGtattttttaattgaaatgcCCTCGTGGCCATGTCTCCCTCATAAAATACGTATGTATTCTGACCTCAATAGGActtcctggataaataaaggttaaataaaaaattaactaAAATAAACCCCTACCCCTTATCTACAAGAGGGGCTAAGAAAATGGGATAGGTTTAAATAAGCAATATGGTAATAACTTTAAATTGCCTTCCTATAGACTGTGTGGTGTTTTCGCCATATTGCTTCAACGTACCCTAGGGAGGAGGTACTAGGGGTCAATTGGCGATTCAGGGTGAGTAGTTATCCTGAGTATGTTCAGCGATACGTCATTAATCATTTTCTAAGAAATTATTGGGGTTTTGTTGCATCACTCCAAactcttttatttatttgatttggaCTTTTTtatcatatatatttttatttgaaacATTCATTAATGAATTAATGTCAATTCAATGTTGTTGAAGACATTGAATTGTAGGGCCTATATAAACCGGAAATGTCTTCACAGTGGGTTACAGGAGACGATTACAGTGAAAATGTTCTATTTTGTTCCACTGTAGTGTTAGTTTTTAAGCACCATCAATAAACCCAGCAAACAATTCTAGGTAGAGAACGTTTTTGTAATGTTACCTGTAATGTTCTCCTGATTGTATCCAGTTTGTGCCCACTTTTCTGTTAGTTAGGGGAACATTCTATGTATGCTAGCAAAAATTCCTGAGAACCTATTTAGCATGTTTTGGCGTTACAGATTAAATGTGATGCCATGTTCTCAGAAAATCCTATATTAAAGAGCAATTTCACCACTTTTCAACTTAATTTTAATTATCTAGCACAATACCAGCGACTACATATGTGAAAAGGGAGCATTTCTACATTTTGTAGAAATAAATATAAAGTTAACAAGTTCTACACGATAATATAATCAAAagtgattttcaaacactatGAAATTCGCAGTGATGTGGGGAGCAAGAAAATATTGGCTAGAAACTTGTTGCAAGTTTTGAAAATCACAGTTTTTCTTACttttaatcctaccctgtgatgtcacagagaagcgTTTTTTTTTTACGTCCTTttctttttaaccacagatcatagaaatgTGCAGTTTTCGTATTATGTAAacactggtatggtgctggagataatgaatatgaggttgaaagtggtggaattgccctttaatgttctagacacattTCATTGGAACTTTCTCAagtccagttttctgagggttaggagaatattccatcaaagtCCCACCAAACATAcgcagaacatggttgccatgacTGTTCTCAGAATATAGATATTAATCCAGGCCACCAAAGCTTTTAATTGAGTGGcccaaaattattttttttaattgggtAAACCCAGGCCACCTTTGtctttgggtaaaaaaaaaagcacttTGAGTCTTGCTCTAGGTCTCTTGTTTTGCCATATGAATTTGGAAATAAGCTTATGAAACAGCTTGAAGGTAGACACAGGGACTAGAATGGGTAATGCATGAAATGGAATGAGCAATCTGGGCAACATATTCATTCTTACCATTTCCACCCTACCAATTAAAGAAAGTGGCAGATCTTCCCAAGTTTGTCTTAATCTGTGAGATCCGTTTAGTATAGTTTCCTGAGTAAAGCTGTGATGCACAGGGTGTTAAAAATAATACGCAAATATCTAAACCCTTGTCTAGACCAATGAAAGGACACATCTTTATTCAACTGAGAGGGCCAATTTCCTGAAATCATCATACCTTCTGATTTTGCTTCACTGACTTTATGCCTAGACTGTTCTTCAAAGCACCTCAAACCGTGTAAGAGTTTAGGGATAGAGGATAAGGGATTTTTTAAATACAGCAAAATATCATATGCAAAGAGGGATATCTTGTGTGTCACACCTTCATCCACTCTACCTTAAATTTGTGGGTTCATCATCATTTCTGCCAGTGGCTCAATATTTAGAGAAAATTATGCTAGTTCCTCTTTTCAGGCTGAAGAATTGTGAGCTGTAACCTTTCAATGGGCTGAATCCCATACTCAATAGTGTTTGTTTTAGGTATAACCAATCAACTATAATGCACGAAATCCATTTAAGCTGAGATGTATTAAATGTTTGTT

Function

NR:

description
protein disulfide-isomerase TMX3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612702.2 True 3651 mRNA 0.40 16 47468480 47506234

Neighbor

gene id symbol gene type direction distance location
si:dkey-154p10.3 LOC106568677 coding upstream 15944 47440133 ~ 47452536 (+)
ccr9a ccr9 coding upstream 87506 47347501 ~ 47380974 (+)
LOC110529979 NA coding upstream 170199 47296663 ~ 47298281 (+)
LOC110529975 LOC106568666 coding upstream 239145 47209551 ~ 47229335 (+)
LOC110529974 LOC106568665 coding upstream 273920 47140657 ~ 47194560 (+)
si:dkey-181m9.8 LOC106568680 coding downstream 639556 48145790 ~ 48162546 (+)
tnk2b tnk2 coding downstream 1172579 48678813 ~ 48806257 (+)
LOC110530923 LOC106568690 coding downstream 1396703 48902937 ~ 48931678 (+)
adipoqb LOC100653481 coding downstream 1611493 49117727 ~ 49120309 (+)
LOC110529995 LOC106568692 coding downstream 1641733 49147967 ~ 49198179 (+)
G714628 NA non-coding upstream 7434 47460706 ~ 47461046 (+)
G714626 LOC100194703 non-coding upstream 8987 47459203 ~ 47459493 (+)
G714624 NA non-coding upstream 11779 47456413 ~ 47456701 (+)
G714468 NA non-coding upstream 216258 47251818 ~ 47252222 (+)
G714636 NA non-coding downstream 100 47506334 ~ 47506918 (+)
G714663 NA non-coding downstream 4619 47510853 ~ 47511102 (+)
G714667 NA non-coding downstream 10287 47516521 ~ 47516758 (+)
G714857 NA non-coding downstream 16990 47523224 ~ 47523482 (+)
G714858 NA non-coding downstream 17743 47523977 ~ 47524314 (+)
G713574 NA other upstream 699234 46715915 ~ 46769246 (+)
G713405 NA other upstream 1002253 46465398 ~ 46466227 (+)
G711912 NA other upstream 1673931 45793269 ~ 45794549 (+)
G711845 NA other upstream 1821103 45646857 ~ 45647377 (+)
G711021 NA other upstream 3019507 44448584 ~ 44448973 (+)
G716035 LOC106581475 other downstream 1031509 48537743 ~ 48544164 (+)
G716133 NA other downstream 1254109 48760343 ~ 48760740 (+)
G716862 NA other downstream 1826607 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 2039978 49546212 ~ 49547085 (+)
LOC118965615 NA other downstream 2347153 49853027 ~ 49854435 (+)

Expression


Co-expression Network