LOC110529987 (LOC106568679)


Basic Information

Item Value
gene id LOC110529987
gene name LOC106568679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47726790 ~ 47894176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612703.2
GAGCATGTTTGATGACTGTTAGTTATATTTTTCTCTAACACTTCCCACAGCATGCGGAGCCATCATCGGTCTGCGTCCCGCTGCAGCTGTGACTTCTCAATGGAGCTCATTGTAGCGACAACACGTAGTTGGAGCTAAGGAGCTGAGCAGCGCAGTTATTGCAATCACGTTGAGCGCGCTGCTGTCTGTTGCAGTGGCATCGTCctgactgtgtgagagaggaaGACATCAAACGACCGTAGTGTTAAGGCTCCAATTATTCATTGTGCTCAGAAGACCATTCTGCTGCAGTAGCCGTTTTCTGACTCCTTGACAACCAACAATAACTATCCTACGTCTGTCTGCTGAAGGATATACTTGCTCATTAAACAAACAACACCTGCCCTGGGGTGTTGCTTCTGTTGAACCCCAAAATCCACCCTGTGGATGGTTGACAACATTTCTTATTGAGTCTTTCGCAGTTCATTTTCACCCAAAAAATGTGTATCGTAATGATGAGACTGAACTGTTCCCCCATGTGGAGTGTGGTTAGCCTTTTGACTTTGTTGCTATTACCACTTTGGGAGATGGGCTGCTCTGGCCTGAGCTTTAACTCAGTGCCCCTGCCGCCGGTCGGGACATACCAAAGAAGCTGCGAAGGAGGGGCACACCACAGGCAGAGGCGCAGTTGGGTGTGGAATCAGTTCTTCGTGCTGGAGGAGTACACAGGGGACGAGCCACTCTACGTGGGCAAGCTGCACTCGGATGTGGATAAGGGTGAAGGGCAGGTGAAGTACGTGCTCAATGGCCAGGGAGCTACCTCCATATTCACCATTGACGAGAACACTGGTGATATCCATGCCACCAAGCGTCTGGATCGCGAGGAGCAGGCTTACTACACACTCCGGGCTCAGGCCAGGAATCGCGAAAACAACCTGCCCGTGGAGCCTGAGTCCGAGTTTGTCATCAAGGTCCAGGATATTAATGACAATGAGCCCAAGTTCCTGAATGGGCCCTACTCAGCCAGGGTCCCCGAGATGTCCCCAGTGGGCACATCTGTGGTGACGGTGGTGGCAACAGATGCAGATGACCCCACAtatggaaacagtgccagggtgATCTACAGTATCCTCGAGGGCCAGCCCTACTTCTCTGTGGAACCAAAGACCGGCGTGGTCAAGACAGCTCTGCCCAATATGGACCGTGAGGCACGGGACCAGTATCTGTTGGTCATCCAGGCCAAGGACATGGTGGGCCAGATGGGAGGACTCTCTGGGACCACCTCCGTCATGGTGACTCTCACTGACGTCAACGACAACCCACCACACTTCTCTCGCAaaAGTTATCAATTCAGCATGTCTGAGTCCCTGCCAGTGGCCTCAGTGGTAGCCAAGATAAAGACGCTAGACTCGGATGTGGGGCCCAATGCTGAGATGGAGTACAggattgtggatggggatggccTCGGGTTGTTCCGAATCACCCccgacagagacacacaggaagGCCACATCACTCTGCAAAAGGGCCTGGACTTTGAGACCAAGTCGAGCTACACCCTACGTGTCGAGGTGTCCAATAGAAACATCGACCTGCGATTCCTCTCCCTTGGCCCATTTAGCGACACAGCTACAGTGCGCCTCATCGTGGAGAACGTGGACGAGCCGCCTGTCTTCTCCTTGCCGCTCAGCAAGATGTTAATATCGGAGGCAGCAAAGGTGGGCACCACCATCGGGACGGTGTCCGCACATGACCCCGATTCCACCAACAGTCCCATCAGGTACTCAATAGACCGCAACACCGACTTGGAGCGCTTCTTCAACATTGACGCCACCACCGGTGTCATCAGCACTGCCAAGCCGCTGGACAGAGAAGTCAACGCCATACATAACATCACCATCTTCGCCATGGAGAGCTTGCACCCATTACAAGTGGGAAAGTGCATAATTCTGATCACAGTGATGGACATCAATGACAATGCACCCGTCTTCGCCATCGAGTACGAGACCTACCTTTGTGAGAGTGCCAGACCTGGACAGGTCATTGAGACCATCAGCGCAATGGACAGAGACGAACCTCAGAGTGGACACCGCTTCTTCTTCTCCCTCACTGCAGAGGCTGCTGGGAACCTCAACTTCACCCTGAGAGACAACAAAGACAACACCGCCTCTGTGCTGACCATGCGAGGGGGTTTCCAGCGTCACGACCAGACTATGTACCGCCTCCCTGTCCTCATCATGGATGGCGGGAGCCCTGCCCTCAGCAGCACCAACACCCTGTCCATCCGGGTGTGCGACTGTGACCCCGATGGAGCTCCCCAGTCATGTGGGAGTGAAGCCTCCATGCTCTCAGCAGGCCTCAGCACTGGGGCCCTCATCGCCATCCTGGCTTGCATCCTCACACTTCTAGTGCTTGTCCTGTTGATCGTCACCATGCGACGGAGGAAGAAAGAGCCCCTGATCCTGGACGAGGAGCGTGACGTGCGCGAGAACATTGTGCGCTACGACGACGAGGGCGGCGGTGAGGAGGACACAGAGGCCTTCGACATGGTCGCTCTCCGCAACCTGAAACTGGTCCGTGAGAGCGGTGGCAAGACCCGCCGTGATGTCACCCCGGAAGTGCCCAGCCTCTTCTTGTCTTCCCGGCCACCACCAGACAATGGCATCTTCCGCGACTTTATCTGGGACCGGCTGAAGGAGGCCGACGCAGACGCGTCGGCACCACCCTACGACTCGCTGCAGACATATGCCTTCGAGGGTAGTGGCTCAGTCGCAGAGTCCCTCAGCTCACTGGATTCCCTGAGCACGGACTCTGAGCAGAACTACGACTACCTCAGCGACTGGGGGCCGCGATTCAAGAAGCTGGCAGACCTCTACGGCCACAGCGATGACGGTAACCTCTTTGCCTCTTAGCCCTCGGTTGAGCCTGCTAAAATGTTGGCACGGACAATCTAACAAATGAGGGAAGGAAACTGAAGAATATAAAGAAGGATACAAGAAAGCAAATGTGAGATGACGAGAAGAAAATGCTGTACTCGGAGGATATTTGATTGGTGTATATAAATGCatcaatgacggtgagaataacCAATAGGATGTTGGTTTTCCAttcaaaatgttttttgggggactgGCAGTATTTTTCAAAGAATGAACTTTGCGAGAATTTGTTAACTAGATTTAATATGATGGAAATTATGCAAAGCTTAAGACGTTGGGATGGGCTCCAGACCCTTAGAAGGACCTCAACGCACAAATGTCCAGACTTTCTCAAGTCACGTGACATTCAAATGTGACGAAAAGTGAACCAATATCTATGCTCCAGTGTTATTACAACAGTGACATTATCAAGTACTCCCTCATGTCGTGTTCAAATGAAAACAGTGCCACCTTGAACTGGCCCTGTAGTCTGTCACAGGGTTCACTGTGATCTGCAATATTTGTTTCAAATGTATATTTATAGAACAGATTCTCAATTTAACTCCATGTGGATTTTACAGCAGTTTTTTTAACAAACAATGGATTTGATCAATTCAGGCTTACCGTGGTTCATGTTCAGTAGGGATCACTGTAGCAAACTACTTTAAAGCAGAAAACAGAaatgagtgtttcttattggaccagAAGTCTCTGCCCCCTTTCTTCAATTTGGTGCCTAACGAACACGGCAATGATCTCTCAACCATTTAGAGTATCAGAAACAATGCATTCCTATAAATGTATGTAGACACCTGCCAGGGATGTCCCTTGTCACACTGAATGCTTTAAGGGTCACAGTGCCGCTGAAGGGTTTATGAAGTCTCCCTCCATTGATGCAAGGGAACAAACACCTCTCACTTACATTGCTCCGTTAAAACCTTGTCACACAGCAGCATAATACTGGTTTCTAAGAGCAGCAGCGTAACATTGTTCTAAATTGAATGCAGAGTATTGGTATCTCCAACATTCAAAGCTGTTGTGATGTTTTTTGTATCCTATGAGGTGTTCTAGCTGCCATGTTGGTTTAAactgtgtttgttttttaaaatggaaACATAGCTATAGCAGCATGGGAAAAAACAGTTAACAATGTGTTGAAGAACATTACAGCAAAGCTTCGGGCATTTGTAAAAACACCAAGCCAAGGAGAATGTCAATTGCTATTTCACATACAGTGAGTAGAAATATAAATGTATGAAGTCAGATTAGTTTGAAATATAAACTTATCTTGCAAAATAAGAAATATGCATACATCATGCTGCTTAAAACATATTTTGTGAGAGGGAAATGCAAGGAAAGGCAGCTGGGAAAGTTTTGATTGAGAGCTctttaggtttaggtttatttgaacatatTGGTATATATGCAGAAACATACATACAATGCAAtgtcaatacaatataaaacacatGTAAAAGATACATGACAGCCCTTCTGAAGCTGATGACCATATCCTTGGTTTTCTTTTCGTTCACATACAGGCAGTTGGTTTTCCCCATTGGGCCACTGCATATACTGCTACATGTGTTTGGCCAGGTAGCTTGCCAGGGAGCAAAATCTGTGAATGTGAGGATGGATGCTCTTTGGGAGGCTAGAGTCTATGGTGATCATGCATAGCACAAACAGTAGATGAGAGAGCACTCCACCCTGGGGCACTCCAGCTGGGACTGGCTGTGAGTTAGAAAGGCATGTTCTCGACCTCACCGTCTGCTTGCGGTTGTCCAGTTCGCTCTTGATAGAGATCCATAGTGAGCGGGTCAGCCCATGCTCCACTAGAGTGAGTAGGAGATGGCTATGGTTTAGGGTGTCAAATGCTCTGGAAAAGTTAATGAAAGTTGCATAAACATCCTGCTTTGGCACTTCATTTGATGTGTTGTGCCAGAGCAGCCACTGTTGACCTGTGCTTCACAAAGCCATGTTGTGAGGAGTTGATGTTCGGAGCAGTCTCCTTCTACAGCATGTTGTGTTCAACCACTCATAGATTTTTCCCATGGAGCTGAGGAGAGAGATTTTCCTGTAGTCTTGGAGGAAGATGGGGTTGCTCTTTTTAGGCACAGCACAGATGATGGACTTTATCCATTGAGAGGGGGAAGTAGCTGTGTTCCAGAGATGTTGAAGATATCGCACAGTACTGGTGCAAGCTCCATACAGTCGGGCCTGCAGACTTCTGCCCATTCAGCCGCTTCAGAGGGGTTTTGATCTGGCCAATGTTGAAGCTGGGGGGACAGACGTTTGTAAGCTTGTTTTCAACAGCCTCAATTTCAGGGATCATGCATGTTGTACCTTCCCATAAAGAGGAAAGTGGGCCTTGAGAATGTCACATTCCCTCTGAGAATGCTGTTGATTGAGGGCTGAAAGGTTTTCTCTGGTCTCACTTGCACCAATAAGGCTTTTCAATGATTTGTATTAGCCAGCAAAGTTAGACGACTTCAGCTGTTGGACTTCTGCTTGGAAGTACTCTTTCTTGGCATTTTTCACTAGAGCTGCAACATTCTGCTGAAGCGTCTTGTATTCTGCTTTGTCTTGACTGAGCTGAGGCTGAGTCTGTATGTGTGGCCATCCATTGCTTGTCTCTGGTGGTAAGTTAACTTTTTTGATGGAGAGATTACTATTGAGAGTAATATTTTAGGAGAGAGTTAAGTTCATCTGTCTGCTCTTGGCAGTGTTTTGCTGTTTAGACTGATGTGAAACTATCTATATTTAGTGCCATGGAGAGAGCACTTAGGTTGTCAGAGGCACGGTGTTGTTTGTAGATGTACTGAGCTGGTGATTTAGGCCATTCACCTGCTGACCACAATATGGTCTGGTGATCCGACTCACCTCAGTGGTAGATGCTTGGCTTTGGAGTATAGGCCTTTCATGATGGTAAATATAGAGTTTAGCTGATCAGCTCCACATGTAGAGTTTGTTACCACTTGGTTAGGGCCATACCTAGAACAAAGAAAACCATGCTTGAATCTGTTTGTGTCACCCAGAATCACCTGGGAGGGTGTATTTGCGTTGCACATGGTCCAAGCACCGCCCTTGAGACGTCGCCTCTTTAGAAGTTGGGGGTGGGATGTAAATTATATCTGTTATAATACAGTTCAGGCCACGGTGAGGCGTGAGAGTTTCGTCCACAGCCAAAGGCACTCACAACGATTGTCCTCAAGTTCACGTAGTCGTTTGTGCCTGATGTTACTGTCAATGTATAGGGTGATCCCTCCTCCAGAGCTGCAcagctgtttatttattttgtttgatGACGGTTCATACAGTTGATGCTCATTAGTAGGAGAAAACGTTGTACAATAAATGGAAGCAAGACAGTCCTACATATCCTTTTCATGCTATTGTGCTGACTCAAACCATACAATGCTATTCTAACTTAAATCCAACAGGTCTAATGATGTACAATGCAGTTCAAAGGCATTTTTCAAGACTTCACATAAACATCTGCTAAGACCCCCTCATAATCTCTTACATTTTATCTCACAACAATCTTGAGTTATTATCAAATATTTTGAGGCCATAGAAAAATTGTCGAGTTGATTATAAACTTATAATATATGTTGaataatattattatatataataaTTCATTATACTTTTGGCATGAAGTGTTATTTGGGGTGTTTTCACACTTGGTCCCTTTCAGCCAAATCTTTTTAATTCAGTGTGGTTCACTTAATTTTTTGTGCAGTGTGAATTCTCCAAAGGTACTCAGACCCCTCACAAGAGCCCCCCGAAGCTAACCGAACTGAGTTTGTTTCGCTTGAATTTCGCGGTCTGGTTTCTTTTTTTAGGGCAATGTGAACACAAAGCTCTCCATGTTCACTTGTAAATATTTCCACACCACACACTAGGCTACTGCAACACCATTTTCCCTACCATAAACCTTCACGTTAGTGCCACAAAAGAGAGAATATCATGATGTGcaggtgtgctgtttttggaTATTGATTAGCGATTGTCAAGGATGAACATATCTGTGAAGTTTTGTACCAACACGATGTTCAGATTATTGCCATATGTGATCTATAGGCTAAGAAAGCTTCATACACTGTTTATTCGATTGTGGGGTTTGAATAGTGTGAGACGACAACAATATTTGGTGAGAATCACAACATATGGTACAAAATCAATACTAGCTCCTAAAGGGAAAGTACATTGGGTGTACACCACATATTGTTTCAGTCCCGCTTCAAATTATGTTCAGCCTATAAAGActtcataatgccttcataaACACTAAATAAATGTGTTACAAATCATCTATAACCAACCGTATGTCATGCTTTATAGAAtgttcataaatgtggcataactgtgtgatATAACATGTTGAATATTATTATAAACATGTGCTTTGTAAAGGGCTCTGAAGGGTGGCACACACTCTAAAGTGAAGTCGTGTAAGTCCCATTACACCCATTTCGTTCCCAGACACTTCCCTTttttcacatgtgccgaatacaacaggtgtaggtagaccttacagtgaaatgcttacttacaagcc
>TU812942
AACAAAGAAAACCATGCTTGAATCTGTTTGTGTCACCCAGAATCACCTGGGAGGGTGTATTTGCGTTGCACATGGTCCAAGCACCGCCCTTGAGACGTCGCCTCTTTAGAAGTTGGGGGTGGGATGTAAATTATATCTGTTATAATACAGTTCAGGCCACGGTGAGGCGTGAGAGTTTCGTCCACAGCCAAAGGCACTCACAACGATTGTCCTCAAGTTCACGTAGTCGTTTGTGCCTGATGTTACTGTCAATGTATAGGGTGATCCCTCCTCCAGAGCTGCAcagctgtttatttattttgtttgatGACGGTTCATACAGTTGATGCTCATTAGTAGGAGAAAACGTTGTACAATAAATGGAAGCAAGACAGTCCTACATATCCTTTTCATGCTATTGTGCTGACTCAAACCATACAATGCTATTCTAACTTAAATCCAACAGGTCTAATGATGTACAATGCAGTTCAAAGGCATTTTTCAAGACTTCACATAAACATCTGCTAAGACCCCCTCATAATCTCTTACATTTTATCTCACAACAATCTTGAGTTATTATCAAATATTTTGAGGCCATAGAAAAATTGTCGAGTTGaataatattattatatataataaTTCATTATACTTTTGGCATGAAGTGTTATTTGGGGTGTTTTCACACTTGGTCCCTTTCAGCCAAATCTTTTTAATTCAGTGTGGTTCACTTAATTTTTTGTGCAGTGTGAATTCTCCAAAGGTACTCAGACCCCTCACAAGAGCCCCCCGAAGCTAACCGAACTGAGTTTGTTTCGCTTGAATTTCGCGGTCTGGTTTCTTTTTTTAGGGCAATGTGAACACAAAGCTCTCCATGTTCACTTGTAAATATTTCCACACCACACACTAGGCTACTGCAACACCATTTTCCCTACCATAAACCTTCACGTTAGTGCCACAAAAGAGAGAATATCATGATGTGcaggtgtgctgtttttggaTATTGATTAGCGATTGTCAAGGATGAACATATCTGTGAAGTTTTGTACCAACACGATGTTCAGATTATTGCCATATGTGATCTATAGGCTAAGAAAGCTTCATACACTGTTTATTCGATTGTGGGGTTTGAATAGTGTGAGACGACAACAATATTTGGTGAGAATCACAACATATGGTACAAAATCAATACTAGCTCCTAAAGGGAAAGTACATTGGGTGTACACCACATATTGTTTCAGTCCCGCTTCAAATTATGTTCAGCCTATAAAGActtcataatgcc
>TU812943
TTAAAACCTTGTCACACAGCAGCATAATACTGGTTTCTAAGAGCAGCAGCGTAACATTGTTCTAAATTGAATGCAGAGTATTGGTATCTCCAACATTCAAAGCTGTTGTGATGTTTTTTGTATCCTATGAGGTGTTCTAGCTGCCATGTTGGTTTAAactgtgtttgttttttaaaatggaaACATAGCTATAGCAGCATGGGAAAAAACAGTTAACAATGTGTTGAAGAACATTACAGCAAAGCTTCGGGCATTTGTAAAAACACCAAGCCAAGGAGAATGTCAATTGCTATTTCACATACAGTGAGTAGAAATATAAATGTATGAAGTCAGATTAGTTTGAAATATAAACTTATCTTGCAAAATAAGAAATATGCATACATCATGCTGCTTAAAACATATTTTGTGAGAGGGAAATGCAAGGAAAGGCAGCTGGGAAAGTTTTGATTGAGAG

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612703.2 False 7458 mRNA 0.46 12 47726790 47894176
TU812942 False 1261 lncRNA 0.39 2 47727071 47728355
TU812943 True 454 lncRNA 0.35 1 47729966 47730419

Neighbor

gene id symbol gene type direction distance location
LOC110529117 NA coding downstream 70722 47655052 ~ 47656068 (-)
LOC110529981 LOC106568675 coding downstream 286848 47397783 ~ 47439942 (-)
LOC110529978 LOC106568670 coding downstream 422871 47298295 ~ 47303919 (-)
LOC110529977 LOC106568669 coding downstream 431482 47283739 ~ 47295308 (-)
LOC110529976 LOC106568668 coding downstream 465938 47230087 ~ 47260852 (-)
LOC110529989 LOC106568683 coding upstream 435508 48329684 ~ 48343010 (-)
dlg1l LOC106568684 coding upstream 461828 48356004 ~ 48616588 (-)
LOC118965521 NA coding upstream 637346 48531522 ~ 48536626 (-)
LOC110529994 LOC106568693 coding upstream 1227873 49122049 ~ 49140712 (-)
LOC118965653 NA coding upstream 1502623 49396799 ~ 49396853 (-)
G715115 NA non-coding downstream 1455 47725034 ~ 47725335 (-)
G715111 NA non-coding downstream 3993 47722559 ~ 47722797 (-)
G715110 NA non-coding downstream 4478 47722069 ~ 47722312 (-)
G715107 NA non-coding downstream 5616 47720814 ~ 47721174 (-)
G715105 NA non-coding downstream 6557 47719750 ~ 47720233 (-)
G715432 NA non-coding upstream 65034 47959210 ~ 47959437 (-)
G715438 NA non-coding upstream 71228 47965404 ~ 47965620 (-)
G715447 NA non-coding upstream 80556 47974732 ~ 47974964 (-)
G715467 NA non-coding upstream 94850 47989026 ~ 47989364 (-)
G715563 NA non-coding upstream 162992 48057168 ~ 48057388 (-)
G714425 LOC106568665 other downstream 548054 47178424 ~ 47178736 (-)
LOC110529973 LOC106568664 other downstream 669130 47051073 ~ 47067973 (-)
crfb16 LOC106568648 other downstream 1401109 46309732 ~ 46325685 (-)
G712814 NA other downstream 2268542 45457777 ~ 45458248 (-)
G711133 NA other downstream 3187286 44538793 ~ 44539504 (-)
G715865 NA other upstream 394766 48288942 ~ 48289581 (-)
G716463 LOC106591423 other upstream 865736 48759912 ~ 48761163 (-)
G716480 tnk2 other upstream 887945 48782121 ~ 48782515 (-)
G716488 NA other upstream 894345 48788521 ~ 48788962 (-)
G715292 NA non-coding upstream 20661 47751080 ~ 47751725 (-)
G715330 NA non-coding upstream 84906 47815325 ~ 47815939 (-)
G715335 NA non-coding upstream 92679 47823098 ~ 47823383 (-)
G715340 NA non-coding upstream 98761 47829180 ~ 47871114 (-)

Expression


Co-expression Network