Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110529987 |
| gene name | LOC106568679 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 47726790 ~ 47894176 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0060034 | notochord cell differentiation | biological_process |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612703.2 | False | 7458 | mRNA | 0.46 | 12 | 47726790 | 47894176 |
| TU812942 | False | 1261 | lncRNA | 0.39 | 2 | 47727071 | 47728355 |
| TU812943 | True | 454 | lncRNA | 0.35 | 1 | 47729966 | 47730419 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529117 | NA | coding | downstream | 70722 | 47655052 ~ 47656068 (-) |
| LOC110529981 | LOC106568675 | coding | downstream | 286848 | 47397783 ~ 47439942 (-) |
| LOC110529978 | LOC106568670 | coding | downstream | 422871 | 47298295 ~ 47303919 (-) |
| LOC110529977 | LOC106568669 | coding | downstream | 431482 | 47283739 ~ 47295308 (-) |
| LOC110529976 | LOC106568668 | coding | downstream | 465938 | 47230087 ~ 47260852 (-) |
| LOC110529989 | LOC106568683 | coding | upstream | 435508 | 48329684 ~ 48343010 (-) |
| dlg1l | LOC106568684 | coding | upstream | 461828 | 48356004 ~ 48616588 (-) |
| LOC118965521 | NA | coding | upstream | 637346 | 48531522 ~ 48536626 (-) |
| LOC110529994 | LOC106568693 | coding | upstream | 1227873 | 49122049 ~ 49140712 (-) |
| LOC118965653 | NA | coding | upstream | 1502623 | 49396799 ~ 49396853 (-) |
| G715115 | NA | non-coding | downstream | 1455 | 47725034 ~ 47725335 (-) |
| G715111 | NA | non-coding | downstream | 3993 | 47722559 ~ 47722797 (-) |
| G715110 | NA | non-coding | downstream | 4478 | 47722069 ~ 47722312 (-) |
| G715107 | NA | non-coding | downstream | 5616 | 47720814 ~ 47721174 (-) |
| G715105 | NA | non-coding | downstream | 6557 | 47719750 ~ 47720233 (-) |
| G715432 | NA | non-coding | upstream | 65034 | 47959210 ~ 47959437 (-) |
| G715438 | NA | non-coding | upstream | 71228 | 47965404 ~ 47965620 (-) |
| G715447 | NA | non-coding | upstream | 80556 | 47974732 ~ 47974964 (-) |
| G715467 | NA | non-coding | upstream | 94850 | 47989026 ~ 47989364 (-) |
| G715563 | NA | non-coding | upstream | 162992 | 48057168 ~ 48057388 (-) |
| G714425 | LOC106568665 | other | downstream | 548054 | 47178424 ~ 47178736 (-) |
| LOC110529973 | LOC106568664 | other | downstream | 669130 | 47051073 ~ 47067973 (-) |
| crfb16 | LOC106568648 | other | downstream | 1401109 | 46309732 ~ 46325685 (-) |
| G712814 | NA | other | downstream | 2268542 | 45457777 ~ 45458248 (-) |
| G711133 | NA | other | downstream | 3187286 | 44538793 ~ 44539504 (-) |
| G715865 | NA | other | upstream | 394766 | 48288942 ~ 48289581 (-) |
| G716463 | LOC106591423 | other | upstream | 865736 | 48759912 ~ 48761163 (-) |
| G716480 | tnk2 | other | upstream | 887945 | 48782121 ~ 48782515 (-) |
| G716488 | NA | other | upstream | 894345 | 48788521 ~ 48788962 (-) |
| G715292 | NA | non-coding | upstream | 20661 | 47751080 ~ 47751725 (-) |
| G715330 | NA | non-coding | upstream | 84906 | 47815325 ~ 47815939 (-) |
| G715335 | NA | non-coding | upstream | 92679 | 47823098 ~ 47823383 (-) |
| G715340 | NA | non-coding | upstream | 98761 | 47829180 ~ 47871114 (-) |
