LOC110529989 (LOC106568683)


Basic Information

Item Value
gene id LOC110529989
gene name LOC106568683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48329684 ~ 48343010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612708.2
GGCACTCTAACCCTGCCCACTTCGACAAAGCCATTCAACTCCGATATAGTGAGCTCTCTGAGGCTTCTCCAGTGCTGTGCATATCAGCAGGACAGGACACCACCACACTTCTTTTTGCAAGGACTAAACTAGAGTGCACACTCTCCCAAACACTTCGTTTTTACAAAGACTGGACAAGAGTTTCTATTTTTATACAGTAAACCTTATTTTACCAACTGGACAAAACAAGAGGAATGGTTTTACAAAGCAGAGAGCTTGCTTTTCTGGAATTGACAAGAGAAGTGGTTTATGAGGACTGGAGCAAAGACCTGGTTTGTGAGACCAAGTAAAGATAGTAGTGAGGTAAAGTGCTTTACCCCATAGGAGTAATACAAGGGCATTGCCTGGTCTCAAATCTCTACTTTCCAACATCCAACTTTTTGAAGCTAGCAGCACCTCACTCAGAGAAGGATTGTACTTTTCTCAAACTTGTTATTTCTGTCTCCCACACAAGTGCTTTGTTGGTGTCGGTGAAACCCCATCAACACCTTGTGAATCGGGAGAGATAAGGTGAGGAGAGCTGTCCGGTGTGCTGCTGTCCTCTACTCACCCTTCTCCAAGtattgtgtgcacgtgtgtgagtCGGCGTTCTGTGGCACAGGATGCCCTTGTTAGCCGCGTTTGCCGGGGTGCTGGCGTTGCTTCTCGCCAGGCTTCAGACAGGATGTGGATCCCCTACTTTGGCTGGACCTCTGGCAGCTGTGGATGTGGCCATGCCAGAGCAGGGGCTGGTGGAGGAGACCCAGGTGACCAACTGTCCGTCCTGTGTGCTGGCCCAGATGACGAGGGGTTATGACCCGGTCCCTCCTGGATTTGAATCAGCATCTGAATCTGTGGCTTGGACTTCGGGCCAAACGGACATGGTGGAAGCGGTGAAGCGGCACATCCTCAACATGCTCCACCTGAGTGCACGGCCCAACGTCACGCACCCGGTGCCACGCGCCGCCCTGCTCAACGCCATCAAGAAACTACACGTTGGCCGTGTGGGTGAGGACGGCAGGGTGGAGATCCAGGAGGAGGGACTGGGGGGTGCTGGCGGTGAGTGGGCGGCACTGCCCGAGCCGCCCTCCGAGATCATTACCTTTGCCGAGCCAGGAAACTCTCCATCTGCCATGACCTTTGACATTTCCAAGGAGGGCAGCGAGCTCTCGGTGGTGGAGCAGGCCAACGTGTGGCTCTTCCTGAAGCTGGCCAAGGGGACAGGGCGGGTCAAGGGAAAAGTGAACATCCAGCTTCTGCAGCGCCGCCGGCAGAAGCCGAAAGCTCCAGGCTCTGCATCCACCTCCACTGAGACCCAGGGCGAGGAGGAGGAGTTGGTGTCAGAGAAGATGGTGGACACACGGCGCAGCGGCTGGCATACTCTCCCCGTGCCACGCAGCATCCAGTCCCTGCTGGATACCGGTGGCAGAGTCCTGGACCTGCGAGTCTCCTGCCCACTGTGCACCGAGGTGGGTGCCAAACCCGTCTTGGTCCCCACCGAGGACGAGCAACCGGGACGGGAGAGGGAACAGTCCCACCGGCCATTCCTCATGGTCGTACTGCGGCCTGGCGAGGAGGAACACGCTCACCGCCGTGCCAAACGAGGCCTGGAGTGCGACGACAAGATGCACATGTGCTGCAAGAGGCAGTTCTATGTCAACTTCAAGGACATCGGCTGGAACGACTGGATCATCGCTCCGCCAGGCTACCACGCCAACTACTGCGAGGGTGACTGCCCCAGCCATGTAGCCAGCATCACTGGTTCCTCGCTGTCCTTTCActccactgtcattaaccacTACCGCATGCGGGGCTACGCGCCCTTCCAGAACATCAAGTCATGCTGCGTGCCCACGCGACTACGCGCCATGTCCATGCTCTACTACAACGAGGAGCAGAAGATCATCAAGAAGGACATCCAGAACATGATCGTGGATGAGTGCGGCTGCTCGTAAGAGACAGTACAGAGCAGTAAAAGACTCATCCATAATAAATAGGCACCATTGATATGATGGACATAATATAACTGGTATGAtggacaatacatttttggggagtTCTTTGACTGATCTGTCTGTTTTGTCTTATTATCTGACAGGGTATCGTTAAATCGGAATAGTCTCTGTGGCACTTTCAGATAAAAAAGAGATACAtcatatatttttgttaaatgGAGACAGAGTGAGACTACTTATCACTGTTTATGCGCAATGTGATTCCTGCTTCTCTGCACTGCAATGAACATGGAACAGTTCCCTGAAAAAAAACTATGCAACTGATGAAGTATTACGATGTGTTGTATTTTTGTTAATGTTTCTTTATATGTGTTTTGTTTCTTAATTGTATACAAAGTAGACTTTTTTTAGTACTTTTTTTCTccaaatgtgtgtctgtgtttcaaaTGTTTGTATTGTTATTGTTGAGAGATACTTGAAAGACATAGGTTTGACCAGCTACTGGAGCCAAACACTAATATAATTATTAACAAGGTTTATTattagaattattattattgttatccaTTTCTGAACTACTTTGTCTTTGTACATAAAAATAATGAATGTTGAAATTTGCACTATACCAACATTCTTGCCAGCTTGATCACATTGACGGTAACTGGCATTTGGGCCTGCATGAAGAGATActgcaggtagcccagtggttagagcgttgggccagtaactgaaaggttgctggattgaatctctgagctgacaaggttctgtccctgaacaaggcagttaacctgctgttccctggttggctgtcattgtaaataagaatttgttcttaactgacttacgtagttaaataaaggttacatttaaaaaactatttttttaaaGAGAAGACTATACACAAGACACATTTAACACATAAACAGCACATACTATAGCTACGGATAGTCTCTCAATCAAAGTAAGGCCAAAGATGGGAGCACCATTAGCTTTTTCAATATGATTCATTTACCAGAAGGACATTCTCTACTAAAGCATCTTGATTAATCTTCCTAACAACTGGtgatgacaaagaaaaaaaaacactttgacCAATCTATGAAAATTATGAAACGAACACTTCAAAGAGTCTGAAAATGTCTTCCAATGGTTAAATCCATTTGGTATGACTTTTTTCCTGCTTCTTTTGTTCAACACTTCTTTCAAACTGAAATTGGAGAGCAGTGGTGTTCCAAACATATGAAATATATGATGATATTCATAACATTACACATGTCATAAATGACAAACATACAAAGGTCAGGGAATGTGtttgagagaagagaagacactgaaacaacacatttagacaacttTACATACTCTTGAGTTACTGAAAATGATTTTGCTCTGTTGTACAAATCAGAACTGTTGCttatggatatttttttatataatttaTTTGGCAGCAattttttgcttcatcattaaaCACAATGCGTTATACTATTTCTGTCATGTTTTGTTTCAGTTATCCGTAACACTTTACTTAATGCGTCCAGGTTTTCACAATGGTTGAAATTTCGTCCAGTCAACGCTTACTCCAAATCCAATGCTTTTACATTTATGATGGGGGAAAAAGGTAGAAAATGTGCAAAATGACGCAAAAAGTCTGTCAGGCTGTCTTAGACACATGGACATAAAGTGGCTACTGTGGAGCCAACACCAGCAGGGAATGCAACCCCAGCGAGGGACAAACTAGCCCTGCCACAAAGCTGGTTGGCTGGATGCTTGTGAGTGACATTGAGCTGCAGTTGCAGGGCCATGTCTGACCATAAACAAGGCGAGCAGCAAACATTCCACAGGCTTCAAGGGCAAGAGACGTGAGTGCTCGCTGATAACCCCTTATAAGATGCCAAGGAGGAGGACGATTGGAGTGATTTGGCAAGCAGGCCTCAGAGGAGTGCTATCTCGTGGCCCTAAAGATGGTTCAGGGCCCCTTGTTGGCACGTGCTTGTTTTTCAGATCCCTGGCTTGAAATATCCTGGGAGGAAATGTATGTAATGATGCTAAGGCTAACAGGAGTTCCAATAAAAAAATTGCTTGAA

Function

NR:

description
inhibin beta A chain-like

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612708.2 True 4063 mRNA 0.46 2 48329684 48343010

Neighbor

gene id symbol gene type direction distance location
LOC110529987 LOC106568679 coding downstream 435508 47726790 ~ 47894176 (-)
LOC110529117 NA coding downstream 673616 47655052 ~ 47656068 (-)
LOC110529981 LOC106568675 coding downstream 889742 47397783 ~ 47439942 (-)
LOC110529978 LOC106568670 coding downstream 1025765 47298295 ~ 47303919 (-)
LOC110529977 LOC106568669 coding downstream 1034376 47283739 ~ 47295308 (-)
dlg1l LOC106568684 coding upstream 12994 48356004 ~ 48616588 (-)
LOC118965521 NA coding upstream 188512 48531522 ~ 48536626 (-)
LOC110529994 LOC106568693 coding upstream 779039 49122049 ~ 49140712 (-)
LOC118965653 NA coding upstream 1053789 49396799 ~ 49396853 (-)
LOC110529999 LOC106568697 coding upstream 1099698 49442708 ~ 49491248 (-)
G716261 NA non-coding downstream 21217 48308186 ~ 48308467 (-)
G716253 NA non-coding downstream 30896 48298565 ~ 48298788 (-)
G715862 NA non-coding downstream 41860 48287032 ~ 48287824 (-)
G715860 NA non-coding downstream 43377 48285891 ~ 48286307 (-)
G715824 NA non-coding downstream 71667 48257722 ~ 48258017 (-)
G716285 NA non-coding upstream 3833 48346843 ~ 48347043 (-)
G716288 NA non-coding upstream 6588 48349598 ~ 48349811 (-)
G716289 NA non-coding upstream 7357 48350367 ~ 48350566 (-)
G716401 NA non-coding upstream 316337 48659347 ~ 48659569 (-)
G715865 NA other downstream 40103 48288942 ~ 48289581 (-)
G714425 LOC106568665 other downstream 1150948 47178424 ~ 47178736 (-)
LOC110529973 LOC106568664 other downstream 1272024 47051073 ~ 47067973 (-)
crfb16 LOC106568648 other downstream 2004003 46309732 ~ 46325685 (-)
G712814 NA other downstream 2871436 45457777 ~ 45458248 (-)
G716463 LOC106591423 other upstream 416902 48759912 ~ 48761163 (-)
G716480 tnk2 other upstream 439111 48782121 ~ 48782515 (-)
G716488 NA other upstream 445511 48788521 ~ 48788962 (-)
G718489 NA other upstream 1442664 49785674 ~ 49837696 (-)

Expression


Co-expression Network