Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530923 |
| gene name | LOC106568690 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 48902937 ~ 48931678 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vertebrate ancient opsin-like |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110530923 | True | 1331 | mRNA | 0.49 | 2 | 48902937 | 48931678 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tnk2b | tnk2 | coding | upstream | 99520 | 48678813 ~ 48806257 (+) |
| si:dkey-181m9.8 | LOC106568680 | coding | upstream | 740391 | 48145790 ~ 48162546 (+) |
| LOC110529986 | LOC106568678 | coding | upstream | 1396703 | 47468480 ~ 47506234 (+) |
| si:dkey-154p10.3 | LOC106568677 | coding | upstream | 1450401 | 47440133 ~ 47452536 (+) |
| ccr9a | ccr9 | coding | upstream | 1521963 | 47347501 ~ 47380974 (+) |
| adipoqb | LOC100653481 | coding | downstream | 186049 | 49117727 ~ 49120309 (+) |
| LOC110529995 | LOC106568692 | coding | downstream | 216289 | 49147967 ~ 49198179 (+) |
| LOC110530924 | LOC106568797 | coding | downstream | 275321 | 49206999 ~ 49209154 (+) |
| gpr158b | LOC106568695 | coding | downstream | 347171 | 49278849 ~ 49381386 (+) |
| LOC110529997 | LOC106568696 | coding | downstream | 455487 | 49387165 ~ 49420283 (+) |
| G716552 | NA | non-coding | upstream | 32449 | 48870255 ~ 48870488 (+) |
| G716551 | NA | non-coding | upstream | 33411 | 48869326 ~ 48869526 (+) |
| G716545 | NA | non-coding | upstream | 36195 | 48866526 ~ 48866742 (+) |
| G716221 | NA | non-coding | upstream | 57980 | 48844721 ~ 48844957 (+) |
| G716216 | NA | non-coding | upstream | 65992 | 48836718 ~ 48836945 (+) |
| G716639 | NA | non-coding | downstream | 43104 | 48974782 ~ 48975096 (+) |
| G716654 | NA | non-coding | downstream | 67687 | 48999365 ~ 49081300 (+) |
| G716752 | NA | non-coding | downstream | 220726 | 49152404 ~ 49152603 (+) |
| G716755 | NA | non-coding | downstream | 225642 | 49157320 ~ 49157540 (+) |
| G716763 | NA | non-coding | downstream | 239330 | 49171008 ~ 49171275 (+) |
| G716133 | NA | other | upstream | 142197 | 48760343 ~ 48760740 (+) |
| G716035 | LOC106581475 | other | upstream | 358773 | 48537743 ~ 48544164 (+) |
| G713574 | NA | other | upstream | 2133691 | 46715915 ~ 46769246 (+) |
| G713405 | NA | other | upstream | 2436710 | 46465398 ~ 46466227 (+) |
| G711912 | NA | other | upstream | 3108388 | 45793269 ~ 45794549 (+) |
| G716862 | NA | other | downstream | 401163 | 49332841 ~ 49333772 (+) |
| G716993 | LOC100136012 | other | downstream | 614534 | 49546212 ~ 49547085 (+) |
| LOC118965615 | NA | other | downstream | 921709 | 49853027 ~ 49854435 (+) |
| LOC110530019 | LOC106568718 | other | downstream | 1453868 | 50384296 ~ 50397007 (+) |
| LOC110530024 | LOC106568723 | other | downstream | 1705018 | 50607401 ~ 50641183 (+) |
