LOC110530924 (LOC106568797)


Basic Information

Item Value
gene id LOC110530924
gene name LOC106568797
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49206999 ~ 49209154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985536.1
TCTGGGCGGGgtcaaagtttgccacaagcgCCAGGCGCTTCAGGACATGGCGAGGCCTCTTAAGCAGTGGCTGTACAAACACAAGGAAAACCCCTACCCCACCAAGACAGAGAAGGTCCTGCTCGCCCTGGGGTCCCACATGACTTTAGTACAGGTCTCAAACTGGTTTGCCAATGCCCGGCGGAGGTTGAAGAACACAGTGAGTCAGCCAGACTTAAGTTGGGCTCTACGGATCAAACTCTACAATAAATACATCCAGGGCAACGCTGAGAGAATGAGTGTCAGCAGTGAAGACACCAACTCTGAGGaTGATGAGCTTCACTTACAAACTCCAGCTAGCCAACCAGAGCTCTCCAGGCCCTCACTTAAGAGTGTCATCAAACAGGAGAACAGGACTGATCCTGCCTTCAGTGACGACTATGTCGCTCCACCCCCCAAGTACAAGAGCAGCTTGCTGAACCGGTACATTAACGACACCCTACGACACGTGATGGCAACCCCTGATGACGTCACAAAGTCCCACCTGAGGAACCACTCAGGGTCGTTCAGCTCCAACGAGTGTGACGACGAACTCGTATCGCCTTCTTCTTCTGAGGCAGAGACAAACTCTCTCTACCATATGGGTAAGGGATTTCTTATTCTTTGGAGACACTTTACTTGAAATGCTGAACAAAGTCTACAGAACGCTGCCATATGCAGGATATAAGAGATGTCATATGCAGACATACTAGCTAACGTACTGTAGCTTTACAACGACTGGACTCGGTTGTGGATCAGTGACATGGCACTAGCTTACTTCAAGGGTTAACGGTAGAATATGCAGAAAtagctccaccatttcctggttgctaaaattcgaatagtttgcctaattttagtttacgtgacaaaacaagcagtcattatgtagagaatcattgtatcgtctaaaccagggatgggcaacatCAGTTAATTTTGTACAATTCTGCACAATTTGCC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24890 MKX; homeobox protein Mohawk

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985536.1 True 981 mRNA 0.48 3 49206999 49209154

Neighbor

gene id symbol gene type direction distance location
LOC110529995 LOC106568692 coding upstream 8820 49147967 ~ 49198179 (+)
adipoqb LOC100653481 coding upstream 86690 49117727 ~ 49120309 (+)
LOC110530923 LOC106568690 coding upstream 275321 48902937 ~ 48931678 (+)
tnk2b tnk2 coding upstream 403582 48678813 ~ 48806257 (+)
si:dkey-181m9.8 LOC106568680 coding upstream 1044453 48145790 ~ 48162546 (+)
gpr158b LOC106568695 coding downstream 69695 49278849 ~ 49381386 (+)
LOC110529997 LOC106568696 coding downstream 178011 49387165 ~ 49420283 (+)
LOC110530001 LOC106568699 coding downstream 297630 49506784 ~ 49566389 (+)
LOC110530003 LOC106568702 coding downstream 382076 49591230 ~ 49600103 (+)
nyap2b LOC106568706 coding downstream 511508 49720662 ~ 49748389 (+)
G716747 NA non-coding upstream 3720 49198274 ~ 49203279 (+)
G716771 NA non-coding upstream 27968 49178556 ~ 49179031 (+)
G716770 NA non-coding upstream 30004 49176706 ~ 49176995 (+)
G716768 NA non-coding upstream 31725 49174900 ~ 49175274 (+)
G716766 NA non-coding upstream 32783 49173902 ~ 49174216 (+)
G716748 NA non-coding downstream 33928 49243082 ~ 49244007 (+)
G716810 NA non-coding downstream 46086 49255240 ~ 49255456 (+)
G716819 NA non-coding downstream 57080 49266234 ~ 49266441 (+)
G716839 NA non-coding downstream 88504 49297658 ~ 49297908 (+)
G716857 NA non-coding downstream 108062 49317216 ~ 49317478 (+)
G716133 NA other upstream 446259 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 662835 48537743 ~ 48544164 (+)
G713574 NA other upstream 2437753 46715915 ~ 46769246 (+)
G713405 NA other upstream 2740772 46465398 ~ 46466227 (+)
G711912 NA other upstream 3412450 45793269 ~ 45794549 (+)
G716862 NA other downstream 123687 49332841 ~ 49333772 (+)
G716993 LOC100136012 other downstream 337058 49546212 ~ 49547085 (+)
LOC118965615 NA other downstream 644233 49853027 ~ 49854435 (+)
LOC110530019 LOC106568718 other downstream 1176392 50384296 ~ 50397007 (+)
LOC110530024 LOC106568723 other downstream 1427542 50607401 ~ 50641183 (+)

Expression


Co-expression Network