Item | Value |
---|---|
gene id | LOC110530001 |
gene name | LOC106568699 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048572.1 |
NCBI id | CM023226.2 |
chromosome length | 91622588 |
location | 49506784 ~ 49566389 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
unnamed protein product |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036985539.1 | False | 1957 | mRNA | 0.54 | 15 | 49506784 | 49556904 |
XM_036985537.1 | False | 4072 | mRNA | 0.47 | 18 | 49506784 | 49564784 |
XM_036985538.1 | False | 4051 | mRNA | 0.47 | 18 | 49506784 | 49564784 |
XM_021612746.2 | False | 4209 | mRNA | 0.46 | 18 | 49509299 | 49564784 |
XM_021612749.2 | False | 4002 | mRNA | 0.47 | 18 | 49531229 | 49564784 |
XM_036985540.1 | False | 3699 | mRNA | 0.46 | 16 | 49532083 | 49564784 |
TU814726 | False | 407 | lncRNA | 0.41 | 2 | 49509398 | 49512817 |
TU814721 | True | 3072 | lncRNA | 0.39 | 2 | 49563060 | 49566389 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110529997 | LOC106568696 | coding | upstream | 86501 | 49387165 ~ 49420283 (+) |
gpr158b | LOC106568695 | coding | upstream | 125398 | 49278849 ~ 49381386 (+) |
LOC110530924 | LOC106568797 | coding | upstream | 297630 | 49206999 ~ 49209154 (+) |
LOC110529995 | LOC106568692 | coding | upstream | 308605 | 49147967 ~ 49198179 (+) |
adipoqb | LOC100653481 | coding | upstream | 386475 | 49117727 ~ 49120309 (+) |
LOC110530003 | LOC106568702 | coding | downstream | 26446 | 49591230 ~ 49600103 (+) |
nyap2b | LOC106568706 | coding | downstream | 155878 | 49720662 ~ 49748389 (+) |
LOC110530010 | LOC106568707 | coding | downstream | 210731 | 49775515 ~ 49846428 (+) |
LOC118965615 | NA | coding | downstream | 288243 | 49853027 ~ 49854435 (+) |
LOC110529118 | LOC106598598 | coding | downstream | 440197 | 50004981 ~ 50007814 (+) |
G716958 | NA | non-coding | upstream | 8276 | 49490288 ~ 49498508 (+) |
G716934 | NA | non-coding | upstream | 49943 | 49454016 ~ 49456841 (+) |
G716891 | NA | non-coding | upstream | 134267 | 49372315 ~ 49372517 (+) |
G716887 | NA | non-coding | upstream | 136718 | 49369749 ~ 49370066 (+) |
G716968 | NA | non-coding | downstream | 1770 | 49566554 ~ 49566788 (+) |
G717006 | NA | non-coding | downstream | 11179 | 49575963 ~ 49576240 (+) |
G717078 | NA | non-coding | downstream | 136904 | 49701688 ~ 49707303 (+) |
G717719 | NA | non-coding | downstream | 284855 | 49849639 ~ 49849938 (+) |
G717721 | NA | non-coding | downstream | 286022 | 49850806 ~ 49851036 (+) |
G716862 | NA | other | upstream | 173012 | 49332841 ~ 49333772 (+) |
G716133 | NA | other | upstream | 746044 | 48760343 ~ 48760740 (+) |
G716035 | LOC106581475 | other | upstream | 962620 | 48537743 ~ 48544164 (+) |
G713574 | NA | other | upstream | 2737538 | 46715915 ~ 46769246 (+) |
G713405 | NA | other | upstream | 3040557 | 46465398 ~ 46466227 (+) |
LOC110530019 | LOC106568718 | other | downstream | 820762 | 50384296 ~ 50397007 (+) |
LOC110530024 | LOC106568723 | other | downstream | 1071912 | 50607401 ~ 50641183 (+) |
G721689 | LOC106583873 | other | downstream | 3812448 | 53377232 ~ 53377705 (+) |
mrpl34 | mrpl34 | other | downstream | 4105612 | 53670348 ~ 53674103 (+) |