LOC110530004 (LOC106568703)


Basic Information

Item Value
gene id LOC110530004
gene name LOC106568703
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49601539 ~ 49612229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612754.2
ctcacacagacacgcacactcacacagacacgcacactcaGAAACACACTGCACCGAGCAAGGGATCCCAAGGAACCGCTGAAGAACCCAGTCGCGTAGGTGGGACAGATCGACAAAGCCGCCAAGATGTGTGACATGGGGGGATTGGATAACCTTGTGGCCAACACGGCCTACCTGAAAGCCCAGGGTGGCGACGACAAGGAGATGAAAAAGCGTCGTCGAAGTCTGTCACTACCTAAGGCCGAGCAGTGTGTCGCCATCAGGGAAACTGTGGATAAGAACTTTGAGTCGCTCTGCGAGAGGCAGCCGATCGGCAAGAAGTTTTTCCGGCAGTTCCTGGCTGCTACCCCAGAGTACATCAATGCCGCTGAGTTCCTGGATGAGCTGAATGACTGGGATCTGGCGGAAGGCGCTGACAAGGACAAGCAGAGGACAAACATGATAAACAAGTTCTGCAAGGACGCCTCCAAGAACTTCCTGACCTACCTCACTGCGGAGGTAGCCGACAAGTGCAAGGCAGTGACGGACAATGACTTTGATGAAGTGATCAATGTTAAGGTGAAGGAAGCCACACGGGAGTTTCTGAAAGGCAAACCCTTCACGGATTACCAAACTAGCCCCTTCTTTGACAAATTTCTGCAGTGGAAGGAGTACGAGAAGCAGCCCATCAGTGATAAAACCTTCTACGAGTTCAGAACTCTGGGCAAGGGAGGTTTCGGAGAGGTATGTGCCGTACAGGTGAAAAACACAGGCCAGATGTACGCCTCCAAGAAGCTGTGCAAGAAACGCCTGAAGAAGAAACATGGTGAGAAGATGGCCCTGCTGGAGAAGCAGATCCTGGAAAAGGTCAACAGCCTGTTCCTTGTCAACCTGGCCTACGCCTACGACACCAAGACCCACCTGTGCCTTGTCATGACTCTGATGAACGGCGGTGACCTCAGGTACCACATCTATTACGTCAGTGAGAAGACCAAGGGTATTGAGATGCCACGTATCATCTACTACACAGCACAGATCTGCACAGGCATCCTTCATCTGCATGAAATGGATATCATATACCGTGACATGAAGCCGGAAAACGTGCTGCTGGACAGCTTTGGCCAGTGCCGACTCTCTGATCTGGGTTTGGCCGTGGAGCTGCCCGCCGGAAAGACCATCTCCCAGAAGGCTGGAACCGGAGCATACATGGCCCCTGAGATCCTACAGGATGTTCCCTATAGGACGTCCGTGGACTGGTGGGCCCTGGGCTGCAGCATCTACGAGATGGTGGCCGCCTACACCCCTTTCAAGGGTCCCGAATCCGGGAAGCaaaaggtggagaaggaggaggtgcaGCGTCGCATCATCAATGATGAACCCCCATGGGAGCACAAGAACTTTGACGCACCCACCAAGGCCATCATCCAGGAGTTCCTTAAGAAGAAGACTGATGAACGCCTGGGCTGCAAGGGAGGAGGCGAGGATCCCCGAAAACACGAGTGGTTCAAGGCCATCAACTTCCCTCGTCTGGAGGCTGGTCTGATCGACCCCCCTTGGGTGCCCAAGCCCAACGTGGTGTACGCCAAGGACACTGGCGACATTGCTGAGTTCTCTGAGATCAAGGGCATTGTGTTTGATGCCAACGATGAGAAGTTCTTCAAGGAGATTGGCACGGGAGCCGTGGCCATTCCATGGCAACAGGAGATGATAGAAACGGGACTGTTTGACGAGCTCAATGACCCCAACAGGAAAGAGTCCGCTGGGGGGTGTGACGACGAGGGGAAGTCTGGCACGTGCACACTGCTGTGAGCAACCGAAGTTGGCACATATATACACAAGTGTGTCACCAACACATCAACTGATTCGCTCATGTTCTGTAAAATTACAACAAAAAATTACACACACAAATTATTTTACAAGGGAGGagagcagcaggagagagagagatgaggtatcCTTCCCTGGAACGGGTTGGTTGCCATTGATTTTAGTAGCCAAATGTGGCTTTACCAAGATTGGTATTGTCTCTTCAGATTGCAGCTACTCCCAGATGTTTCACATGATGTAGTAGTGCCCCCCTGGTCAACATGGAGTAAGAGTAAAATAGTAAAATACAACAAATTCATATTGTGGATACAAAAACATTATATGATTAATGGATAAATACAGTCCTCTGGTTACATACAACCTGCACCAGAAAGATTAGCATATGCAGACAGCAGTGCTAGCCCTCAAACCTAGGCATTGGCCACAATGGAGCACGATATGCTGAATGAATTCGTTCAGGAATATGGTTGGAATCTCGTTCTTGATTGTGGTGCATTCATTTAATTTGATATGGCTACGGTTTTTTTCTCGCTCCCCCACCCCCTACATTCCTTTTGCCTCTCTAAAGGCAGAGGTGATAACTTTTTTTGGGACACTTCACCTTATTACAAATTTCACCTGGAAGCAATCAAAAGCAAATAAATGATGATTTCTACCAACAGAAATTATTTCAAATGAAATGTGGTGGAGGTAACATTTACTTACCTACAGTGACCTTTAAACCCAGTGAAGTCAATCACTACATTTCCAAGCAGGTGGACTTCACAGTCCAGCATCTAGTTTTATTTTAAAACGGTGTTGTATATGaatataaatatgtatatttaTGCACTGAGAGGGGAGAAATCCACAGATTAGGTGCTAGTCAGAACTGGAAGAATGCTCAACTCTTGTGTTTGGAAAGGTTCTATGCCCTGGTTTGACAGGAGAGAGGAATGTAGAGAAAAGACACTCTATATTCGAAAGTTGAACATTTAGAGCAGTTGTGTTCTTGTAccagcccccccccaaaaatgtgaaTTTTTAGGGCTTTCTTCCTCCCTGAGATATGTGTGCGCACCTTTAACTAGAAAATTGCTTCCATTGATGTGATTTGTCTGAAGTTCGAGATATATGTACAAATCTCAAGTTAGaatctagttagctagctagacttCAAAAcctttaacaaaaaaaaaatcacatttcccTTTTGTCTTGTCTCAAGACTTATTTCATATAACTTTAAATTGACAAACTTTCCAGATCTTGACCAGTATTATGTTTTTACAGTAAATATGTTAATTATAATCTGAATATAAATATACTTGTAAATATAATATGAGAGAAAAACATTACATATGCTACTGTA

Function

NR:

description
rhodopsin kinase 1-like

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612754.2 True 3157 mRNA 0.47 4 49601539 49612229

Neighbor

gene id symbol gene type direction distance location
LOC118965614 NA coding downstream 22732 49577103 ~ 49578807 (-)
LOC110530002 LOC106568700 coding downstream 71853 49524738 ~ 49529686 (-)
LOC110529999 LOC106568697 coding downstream 110291 49442708 ~ 49491248 (-)
LOC118965653 NA coding downstream 204686 49396799 ~ 49396853 (-)
LOC110529994 LOC106568693 coding downstream 460827 49122049 ~ 49140712 (-)
LOC110530005 NA coding upstream 17348 49629577 ~ 49630769 (-)
LOC110530006 LOC106568704 coding upstream 23246 49635475 ~ 49647848 (-)
zgc:110269 LOC106568705 coding upstream 35704 49647933 ~ 49655158 (-)
LOC110530011 LOC106568709 coding upstream 254043 49866272 ~ 49937001 (-)
LOC118965522 NA coding upstream 269414 49881643 ~ 49886226 (-)
G717525 NA non-coding downstream 7795 49591230 ~ 49593744 (-)
G717565 NA non-coding downstream 27441 49573848 ~ 49574098 (-)
G717560 NA non-coding downstream 33963 49567369 ~ 49567576 (-)
G717556 NA non-coding downstream 42457 49558865 ~ 49559082 (-)
G717596 NA non-coding upstream 38362 49650591 ~ 49683675 (-)
G717617 NA non-coding upstream 55507 49667736 ~ 49672776 (-)
G717622 NA non-coding upstream 65988 49678217 ~ 49683069 (-)
G718461 LOC106568706 non-coding upstream 129556 49741785 ~ 49742817 (-)
G716488 NA other downstream 812577 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 819024 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 840376 48759912 ~ 48761163 (-)
dlg1l LOC106568684 other downstream 985016 48356004 ~ 48616588 (-)
G715865 NA other downstream 1311958 48288942 ~ 48289581 (-)
G718489 NA other upstream 173445 49785674 ~ 49837696 (-)
G719151 NA other upstream 1324699 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1640126 51252355 ~ 51259061 (-)
G721275 NA other upstream 3148810 52761039 ~ 52761451 (-)

Expression


Co-expression Network