LOC110530006 (LOC106568704)


Basic Information

Item Value
gene id LOC110530006
gene name LOC106568704
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49635475 ~ 49647848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612756.2
CCTGTATGCCAACGAAGAAGGAACGTGTCCGTCCCACTAGACCTCTCAGCAAGGTGTCTGAACCACCACCGCTGTCGAGGCAAGCCTCCCCGAAGACATCCTCTCCCTAGGCCTCGATAAACTTCTCCCACCGTTAGTAGCCCCATTTCTCAACCATGGCGACGAGTGCGAAGCGAAAGCAAGAGGAGACGCATCTCAAGATGCTTCGGGAAATGACTAGCCAACCCCCGAATAGGAAGTGCTTTGATTGCGACCAGCGCGGCCCGACTTATGCCAACATGACAGTGGGTTCCTTCGTCTGTACCACCTGTTCTGGCATCTTACGAGGGCTGAATCCCCCCCACAGAGTGAAGTCCATCTCTATGACCACCTTCACGCAACAGGAAATCGAATTCCTACAGAAACACACCAACGAGGTTTGTAAACACATCTGGTTGGGGCTGTACAATGACCGGACATTGGTTGTTCCAGACTTCCACGAACCACAGAAAGTAAAAGAATTCCTCCAGGAAAAGTACGAGAAAAAAAGATGGTATGTCTCTCCAGACCAGGCTAGAACGGTAGCCACAGCCCAGGCTTCCAAGTCGGGCACCTCAGCCAGCAGCACAGGCAGCACCCCGGAGGTCCAGCCCCTGAGAACCCTGCAGCTTAACAAGACCCCACCAACGCGTCAGtCGCCGGTGGTGGTTCGCTCCCAGGCCTATCCTATAGTTCAGGAGAAGAAGTTTGACCTCCTATCTGACCTGGGTGGAGACATCTTTGCCACTCCGCCCTCTCAGGCTGCCAGCAACTCCAACTTTGCCAACTTTGCACATTTCCCGAGCCAGTCAGCGACTCAGGTTAGCTCAAACGCCGACTTTGCCAACTTTGAGGCGTTTGGCAACTCTGGAGTACCTTCACATTTCAGCACCTCACCCCCCTCACAGTCCTTTGCATCAGgGCGAGGTGTCCCAGTGCCGTCGGTGGCCGGTGCTGCACCGGCTCCGTCCCAGCTGGGCACTTCAGCAGAGGACCGCTACGCTGCTCTTGCTGAGCTGGACAACGAGCTGAGCTCTTCGGCCCCCACAGGGAGCAGTGTCCAGGGGAATATGTTTGGAGCTGTGTTGGGAACCTCGCCTGCCCAGACTCAGTCAGTATTACCCAGCATGCATGTGCAGCAAGGCTTTGGAGCCATCCCGTCCAATAATCCATTTGTTGCCGCCGCCCCGGATATGGCCACCAACCCCTTCCAGACTAATGCCTCGTTTGGCACAGGCTCTATGAGTATGCCTGCTGGCTTTGGGAACCCCTCCTCTTACTGCCTCCCGACCAGTTTCAGTGGGACATTCCAGCAGCCCTTCCCTGGCCAGGCCCCTTGCCCTTACACCCAGCCGGGGGCCTACCACCCCCAGCAACCCAACGGCCCTGGTGGATACCCAGTCTACGGGCAGACCAAGCCCTCCATGACCCCCTTTGGGCAGCCCATGGCTGGGCCGGGGATGACCAATAACCCATTCATGGCGGGAGCCCCGGCTGGATCCTACCCTGCTGGAGGCTCTTCCACCAACCCCTTCCTGTAGTGCGCCTATCTCCTCGTCAACACCACCAGGGGGCAGCATGCAGCACCTATTCAATGCACCGGCTCCGTCACACCCTGTGATGTGAACGTACAGTTCTGAAACTCTGAATTCAAGTTTTTATTAAAAGCTTAGTTTATGACACTATAAAGGACTATGGGATTTGGGACTGCCATGGAATGATGCCCTTGGACTAAATACATTCtctattcatttattttttttgttcatttgACAGCTCTTTATTGTGCATATCGGCATTTGTAATCACATTAAAATACAAGGTATAATAAGGACTTGACATGGTTGGGCAACATTATGGATGTGCCACTATGTTTGTACCAGTGTGTTTATAGGATAACAATCAGGGTTGTATACAAGTCTAGGAGGGAACTGAGGTGACGTGAAGAGTTTTTGCCTCGAATTATGTGAATTATCAGGCTGGCAGAGGAGATATGCACCTAATTCTATTTGAGGGGCTACTGGTAGTCAAATTCAGTATAATTTAATTCCGTGTAAAATAAACTATGTAATGTGTAACGGTTTCAATGGGCATGACGCCTCCGCCTGTAGGTATGGCATCCGGGAAAGGGACTTTTATTTGGTCCATAATTATTACCACTATTACTGAACGTGGCCCTGTTCTTATTAGGCTCAAAACACCATATAGTGCTATCCCAAGGCGTTGCAACAGCATTTTGCCTAGCGGTTTACAAAACCGTTGAATAACCTTGAATACAACCCAGGTCTTTTACCCttactcttttttttatttatttgttactaGGATAAGTCCCAAGTGTAACAACAGCCCAAAcacactaacgttagctagttttgAGACCGTTTGGAAAGGGAACAAATGcctggtgaaaaaaaaaaagagacccCAGACTCCAGCACTAGCCGTTTGGATGACAGGCAGGTGTCTACTGCAGCAcaaaaagagagggaaggagagtagGGAATAGAGAGGAAAGGTTCTTGTGCTCTCAGCGAGCCCTCTCCATGTAACCTGACCCGCATGTGTGTAAAAACACCTGAGAAGTTTGTTTTTATTTGGAGAGATGGTTACTTGTGGCACCCAATCACTTTTAATGAATTTAAACGTTACTTGCCATTACAGGAATATGTAAGTCAATGtgtacatatataaatatatgtataaaTATTAAAGATTTTTAACTACAA
>XM_036985551.1
CCTGTATGCCAACGAAGAAGGAACGTGTCCGTCCCACTAGACCTCTCAGCAAGGTGTCTGAACCACCACCGCTGTCGAGGCAAGCCTCCCCGAAGACATCCTCTCCCTAGGCCTCGATAAACTTCTCCCACCGTTAGTAGCCCCATTTCTCAACCATGGCGACGAGTGCGAAGCGAAAGCAAGAGGAGACGCATCTCAAGATGCTTCGGGAAATGACTAGCCAACCCCCGAATAGGAAGTGCTTTGATTGCGACCAGCGCGGCCCGACTTATGCCAACATGACAGTGGGTTCCTTCGTCTGTACCACCTGTTCTGGCATCTTACGAGGGCTGAATCCCCCCCACAGAGTGAAGTCCATCTCTATGACCACCTTCACGCAACAGGAAATCGAATTCCTACAGAAACACACCAACGAGGTTTGTAAACACATCTGGTTGGGGCTGTACAATGACCGGACATTGGTTGTTCCAGACTTCCACGAACCACAGAAAGTAAAAGAATTCCTCCAGGAAAAGTACGAGAAAAAAAGATGGTATGTCTCTCCAGACCAGGCTAGAACGGTAGCCACAGCCCAGGCTTCCAAGTCGGGCACCTCAGCCAGCAGCACAGGCAGCACCCCGGAGGTCCAGCCCCTGAGAACCCTGCAGCTTAACAAGACCCCACCAACGCGTCAGtCGCCGGTGGTGGTTCGCTCCCAGGCCTATCCTATAGTTCAGGAGAAGAAGTTTGACCTCCTATCTGACCTGGGTGGAGACATCTTTGCCACTCCGCCCTCTCAGGCTGCCAGCAACTCCAACTTTGCCAACTTTGCACATTTCCCGAGCCAGTCAGgGCGAGGTGTCCCAGTGCCGTCGGTGGCCGGTGCTGCACCGGCTCCGTCCCAGCTGGGCACTTCAGCAGAGGACCGCTACGCTGCTCTTGCTGAGCTGGACAACGAGCTGAGCTCTTCGGCCCCCACAGGGAGCAGTGTCCAGGGGAATATGTTTGGAGCTGTGTTGGGAACCTCGCCTGCCCAGACTCAGTCAGTATTACCCAGCATGCATGTGCAGCAAGGCTTTGGAGCCATCCCGTCCAATAATCCATTTGTTGCCGCCGCCCCGGATATGGCCACCAACCCCTTCCAGACTAATGCCTCGTTTGGCACAGGCTCTATGAGTATGCCTGCTGGCTTTGGGAACCCCTCCTCTTACTGCCTCCCGACCAGTTTCAGTGGGACATTCCAGCAGCCCTTCCCTGGCCAGGCCCCTTGCCCTTACACCCAGCCGGGGGCCTACCACCCCCAGCAACCCAACGGCCCTGGTGGATACCCAGTCTACGGGCAGACCAAGCCCTCCATGACCCCCTTTGGGCAGCCCATGGCTGGGCCGGGGATGACCAATAACCCATTCATGGCGGGAGCCCCGGCTGGATCCTACCCTGCTGGAGGCTCTTCCACCAACCCCTTCCTGTAGTGCGCCTATCTCCTCGTCAACACCACCAGGGGGCAGCATGCAGCACCTATTCAATGCACCGGCTCCGTCACACCCTGTGATGTGAACGTACAGTTCTGAAACTCTGAATTCAAGTTTTTATTAAAAGCTTAGTTTATGACACTATAAAGGACTATGGGATTTGGGACTGCCATGGAATGATGCCCTTGGACTAAATACATTCtctattcatttattttttttgttcatttgACAGCTCTTTATTGTGCATATCGGCATTTGTAATCACATTAAAATACAAGGTATAATAAGGACTTGACATGGTTGGGCAACATTATGGATGTGCCACTATGTTTGTACCAGTGTGTTTATAGGATAACAATCAGGGTTGTATACAAGTCTAGGAGGGAACTGAGGTGACGTGAAGAGTTTTTGCCTCGAATTATGTGAATTATCAGGCTGGCAGAGGAGATATGCACCTAATTCTATTTGAGGGGCTACTGGTAGTCAAATTCAGTATAATTTAATTCCGTGTAAAATAAACTATGTAATGTGTAACGGTTTCAATGGGCATGACGCCTCCGCCTGTAGGTATGGCATCCGGGAAAGGGACTTTTATTTGGTCCATAATTATTACCACTATTACTGAACGTGGCCCTGTTCTTATTAGGCTCAAAACACCATATAGTGCTATCCCAAGGCGTTGCAACAGCATTTTGCCTAGCGGTTTACAAAACCGTTGAATAACCTTGAATACAACCCAGGTCTTTTACCCttactcttttttttatttatttgttactaGGATAAGTCCCAAGTGTAACAACAGCCCAAAcacactaacgttagctagttttgAGACCGTTTGGAAAGGGAACAAATGcctggtgaaaaaaaaaaagagacccCAGACTCCAGCACTAGCCGTTTGGATGACAGGCAGGTGTCTACTGCAGCAcaaaaagagagggaaggagagtagGGAATAGAGAGGAAAGGTTCTTGTGCTCTCAGCGAGCCCTCTCCATGTAACCTGACCCGCATGTGTGTAAAAACACCTGAGAAGTTTGTTTTTATTTGGAGAGATGGTTACTTGTGGCACCCAATCACTTTTAATGAATTTAAACGTTACTTGCCATTACAGGAATATGTAAGTCAATGtgtacatatataaatatatgtataaaTATTAAAGATTTTTAACTACAA

Function

NR:

description
arf-GAP domain and FG repeat-containing protein 1-like isoform X3

GO: NA

KEGG:

id description
K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612756.2 False 2747 mRNA 0.50 12 49635475 49647848
XM_036985551.1 True 2639 mRNA 0.50 11 49635475 49647848
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530005 NA coding downstream 4706 49629577 ~ 49630769 (-)
LOC110530004 LOC106568703 coding downstream 23246 49601539 ~ 49612229 (-)
LOC118965614 NA coding downstream 56668 49577103 ~ 49578807 (-)
LOC110530002 LOC106568700 coding downstream 105789 49524738 ~ 49529686 (-)
LOC110529999 LOC106568697 coding downstream 144227 49442708 ~ 49491248 (-)
zgc:110269 LOC106568705 coding upstream 85 49647933 ~ 49655158 (-)
LOC110530011 LOC106568709 coding upstream 218424 49866272 ~ 49937001 (-)
LOC118965522 NA coding upstream 233795 49881643 ~ 49886226 (-)
LOC110530012 LOC106568711 coding upstream 317066 49964914 ~ 49970082 (-)
LOC118965625 NA coding upstream 335541 49983389 ~ 49986205 (-)
G717525 NA non-coding downstream 41731 49591230 ~ 49593744 (-)
G717565 NA non-coding downstream 61377 49573848 ~ 49574098 (-)
G717560 NA non-coding downstream 67899 49567369 ~ 49567576 (-)
G717596 NA non-coding upstream 2743 49650591 ~ 49683675 (-)
G717617 NA non-coding upstream 19888 49667736 ~ 49672776 (-)
G717622 NA non-coding upstream 30369 49678217 ~ 49683069 (-)
G718461 LOC106568706 non-coding upstream 93937 49741785 ~ 49742817 (-)
G718537 NA non-coding upstream 202393 49850241 ~ 49850528 (-)
G716488 NA other downstream 846513 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 852960 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 874312 48759912 ~ 48761163 (-)
dlg1l LOC106568684 other downstream 1018952 48356004 ~ 48616588 (-)
G715865 NA other downstream 1345894 48288942 ~ 48289581 (-)
G718489 NA other upstream 137826 49785674 ~ 49837696 (-)
G719151 NA other upstream 1289080 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1604507 51252355 ~ 51259061 (-)
G721275 NA other upstream 3113191 52761039 ~ 52761451 (-)

Expression

LOC110530006(LOC106568704) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110530006(LOC106568704) Expression in each Bioproject

Bar chart with 21 bars.
LOC110530006(LOC106568704) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network