LOC118965615


Basic Information

Item Value
gene id LOC118965615
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49853027 ~ 49854435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986846.1
attcaagatcctattttccctaaacccctaaccctggttctcacccccacacacacacacacgttaatagGCTATAGGCCTTTAATTAGCTGTAACGTTTTTAATTATGGTCCAACATGTTAACTTCTTGTAGAATAGTCAGTATTGCAAATAATATAACAACACGAGTTGTGTTTAGCTTCACCCGTTATATTTTGACCCTTTAATGACTGTTGTAAATTATCTGTCACGTGCTTTAGTGCATCACTAaggacaaatacaatttgagaaCTATCTTCATTACCTCACCCTCATCTTACGCAATACATTGGTTTAAAAAGACCGGGTACCTAGGTAGCTGGAATTTAGTCACAGTATCCTTCCTTATTCAATCTTGGGACATCTCACCTACTAGCTGAAGAGAAATACCAGATGGCCCTCACCGGAGTCTTGTGTGCATTTGCCTTTGTATGTGTCACGCTGTGTCAGGCAGAGAAGATTGACTCTGTCGGAGGTTTGTCGGATCGCAATCTCAACCACCAAGATAAACTAACATGGCTCGAAACATTACAGGAGAAAAGGGTAACCACCGACGACAAATACCACCTCGCCTGGCTGCTATACAAGCTTTTAAAGTCACACAGCGACCAGTTCAAATCCAACTTTCTCCCTCCTGGACCAGAGAGTGGCGGGATACAGGAGAGTAGGCGCGAGACTACGCCACAGAAGGACAAGCGCATTCGCAAAGCCGGATGCAGAATGTTCTTTTGGAAGTCATGGACTGCATGCTGACAAACTTGTCTACTTTTTACTCCAAAATGCAGATGGTTTTCGAATCGAGAGCCTTCATTCCAAATCAGCTTACCAAAGTTTTGTCTGCAATTATTAATGTAACTTATTATTTTTATGAATGGTAACTTATCAACTTATTGACGTGGTTGTGAGGCTACGAATGTCAAGTTGTAATAAAATGTGAGTTATTTATTAATTGTTTGT
>TU815524
TCCTTATTCAATCTTGGGACATCTCACCTACTAGCTGAAGAGAAATACCAGATGGCCCTCACCGGAGTCTTGTGTGCATTTGCCTTTGTATGTGTCACGCTGTGTCAGGCAGAGAAGATTGACTCTGTCGGAGGTTTGTCGGATCGCAATCTCAACCACCAAGATAAACTAACATGGCTCGAAACATTACAGGAGAAAAGGGTAACCACCGACGACAAATACCACCTCGCCTGGCTGCTATACAAGCTTTTAAAGTCACACAGCGACCAGTTCAAATCCAACTTTCTCCCTCCTGGACCAGAGAGTGGCGGGATACAGGAGAGTAGGCGCGAGACTACGCCACAGAAGGACAAGCGCATTCGCAAAGCCGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986846.1 False 975 mRNA 0.41 2 49853027 49854435
TU815524 True 372 TUCP 0.50 2 49853387 49854192

Neighbor

gene id symbol gene type direction distance location
LOC110530010 LOC106568707 coding upstream 6599 49775515 ~ 49846428 (+)
nyap2b LOC106568706 coding upstream 104638 49720662 ~ 49748389 (+)
LOC110530003 LOC106568702 coding upstream 252924 49591230 ~ 49600103 (+)
LOC110530001 LOC106568699 coding upstream 288243 49506784 ~ 49566389 (+)
LOC110529997 LOC106568696 coding upstream 432744 49387165 ~ 49420283 (+)
LOC110529118 LOC106598598 coding downstream 150546 50004981 ~ 50007814 (+)
LOC110530925 LOC106568799 coding downstream 160743 50015178 ~ 50038484 (+)
LOC110530014 LOC107558802 coding downstream 188907 50043342 ~ 50071991 (+)
LOC110530017 LOC106568715 coding downstream 291929 50146364 ~ 50336325 (+)
LOC110530020 LOC106568719 coding downstream 525336 50379771 ~ 50383088 (+)
G717721 NA non-coding upstream 1991 49850806 ~ 49851036 (+)
G717719 NA non-coding upstream 3089 49849639 ~ 49849938 (+)
G717078 NA non-coding upstream 145724 49701688 ~ 49707303 (+)
G717006 NA non-coding upstream 276787 49575963 ~ 49576240 (+)
G716968 NA non-coding upstream 286239 49566554 ~ 49566788 (+)
G717724 NA non-coding downstream 942 49855377 ~ 49855628 (+)
G717726 NA non-coding downstream 1851 49856286 ~ 49856491 (+)
G717728 NA non-coding downstream 3679 49858114 ~ 49858355 (+)
G717678 NA non-coding downstream 5282 49859717 ~ 49863082 (+)
G717732 NA non-coding downstream 12055 49866490 ~ 49869558 (+)
G716993 LOC100136012 other upstream 305942 49546212 ~ 49547085 (+)
G716862 NA other upstream 519255 49332841 ~ 49333772 (+)
G716133 NA other upstream 1092287 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1308863 48537743 ~ 48544164 (+)
G713574 NA other upstream 3083781 46715915 ~ 46769246 (+)
LOC110530019 LOC106568718 other downstream 531111 50384296 ~ 50397007 (+)
LOC110530024 LOC106568723 other downstream 782261 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3522797 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3815961 53670348 ~ 53674103 (+)
rps28 NA other downstream 4071782 53926018 ~ 53927959 (+)

Expression


Co-expression Network