Item | Value |
---|---|
gene id | LOC110530011 |
gene name | LOC106568709 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048572.1 |
NCBI id | CM023226.2 |
chromosome length | 91622588 |
location | 49866272 ~ 49937001 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021612765.2 | False | 5033 | mRNA | 0.46 | 6 | 49866272 | 49909160 |
XM_021612766.2 | False | 4985 | mRNA | 0.46 | 5 | 49866272 | 49909160 |
XM_021612767.2 | False | 4457 | mRNA | 0.45 | 5 | 49866273 | 49921500 |
XM_036985558.1 | False | 3804 | mRNA | 0.44 | 4 | 49866274 | 49937001 |
TU816422 | False | 3385 | TUCP | 0.45 | 6 | 49866630 | 49889252 |
TU816426 | True | 199 | lncRNA | 0.51 | 1 | 49920943 | 49921141 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
zgc:110269 | LOC106568705 | coding | downstream | 211114 | 49647933 ~ 49655158 (-) |
LOC110530006 | LOC106568704 | coding | downstream | 218424 | 49635475 ~ 49647848 (-) |
LOC110530005 | NA | coding | downstream | 235503 | 49629577 ~ 49630769 (-) |
LOC110530004 | LOC106568703 | coding | downstream | 254043 | 49601539 ~ 49612229 (-) |
LOC118965614 | NA | coding | downstream | 287465 | 49577103 ~ 49578807 (-) |
LOC110530012 | LOC106568711 | coding | upstream | 27913 | 49964914 ~ 49970082 (-) |
LOC118965625 | NA | coding | upstream | 46388 | 49983389 ~ 49986205 (-) |
LOC110530015 | LOC106568800 | coding | upstream | 156496 | 50093497 ~ 50095929 (-) |
LOC110530016 | LOC106568717 | coding | upstream | 400730 | 50337731 ~ 50366270 (-) |
LOC110530021 | LOC106568720 | coding | upstream | 475979 | 50412980 ~ 50434788 (-) |
G718546 | NA | non-coding | downstream | 1539 | 49864505 ~ 49864733 (-) |
G718544 | NA | non-coding | downstream | 5489 | 49859964 ~ 49860783 (-) |
G718541 | NA | non-coding | downstream | 10873 | 49855104 ~ 49855399 (-) |
G718537 | NA | non-coding | downstream | 15744 | 49850241 ~ 49850528 (-) |
G718461 | LOC106568706 | non-coding | downstream | 123455 | 49741785 ~ 49742817 (-) |
G718594 | NA | non-coding | upstream | 6715 | 49943716 ~ 49944228 (-) |
G718598 | NA | non-coding | upstream | 10767 | 49947768 ~ 49948123 (-) |
G718625 | NA | non-coding | upstream | 57925 | 49994926 ~ 50001193 (-) |
G718663 | LOC106568713 | non-coding | upstream | 114444 | 50051445 ~ 50059575 (-) |
G718648 | LOC106568713 | non-coding | upstream | 131512 | 50068513 ~ 50071983 (-) |
G718489 | NA | other | downstream | 28576 | 49785674 ~ 49837696 (-) |
G716488 | NA | other | downstream | 1077310 | 48788521 ~ 48788962 (-) |
G716480 | tnk2 | other | downstream | 1083757 | 48782121 ~ 48782515 (-) |
G716463 | LOC106591423 | other | downstream | 1105109 | 48759912 ~ 48761163 (-) |
dlg1l | LOC106568684 | other | downstream | 1249749 | 48356004 ~ 48616588 (-) |
G719151 | NA | other | upstream | 999927 | 50936928 ~ 50939471 (-) |
LOC110530043 | LOC106568739 | other | upstream | 1315354 | 51252355 ~ 51259061 (-) |
G721275 | NA | other | upstream | 2824038 | 52761039 ~ 52761451 (-) |
LOC110529122 | LOC106568971 | other | upstream | 3526181 | 53462034 ~ 53478913 (-) |
G722459 | NA | other | upstream | 3561147 | 53495804 ~ 53499730 (-) |
LOC118965522 | NA | coding | downstream | 34717 | 49881643 ~ 49886226 (-) |
G718580 | NA | non-coding | upstream | 2920 | 49924061 ~ 49924328 (-) |
G718581 | NA | non-coding | upstream | 3501 | 49924642 ~ 49924880 (-) |
G718590 | NA | non-coding | upstream | 13692 | 49934833 ~ 49935036 (-) |
LOC110530011 | LOC106568709 | other | downstream | 31691 | 49866272 ~ 49937001 (-) |