LOC110530012 (LOC106568711)


Basic Information

Item Value
gene id LOC110530012
gene name LOC106568711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49964914 ~ 49970082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612768.2
GGCTCTTTAAAAATGTTACCCTCTCCCATACAGGGGGGCAGTGAGGTAGGGTGTACACACAGCTCGGTTAGCGACACCCACTAAACCAATCAACCCAGAGAGCCACTGGCTCCTTGAGGCCGTACCAGGAGGGCAGAACTTCAGTTGAACAACAGGAAACAGATAAAGCAGAATATGGCGCGGACAGGAAGGCTAATGTTTTCCCTCATATCCACCGGAATTATTGTAGTGTTATTGCCAGAGTTTCTGGGGGCCGGCCCGGTGAGGCAGAATGCGAAGAAGGAGGCATCTGCAGTATCCAGTGATGTCCGCAGCAAGAGGAGTCTTACCGTTCCCATTCCTGTCCTCAAGAGTCTTCCTGACTTCTGGGGATGGTACAAGTTCTTCATGGATACTGGTAACCAGGAAGGGATAGAGCACCTGGACAAGATGTACCTGACCTACCTGCAGAACAAGCACCGTTCCGAGGAGGGTCCCACCTTCACCCATTACCTCACCCACCTCAGTGCTATCTACAAGACTGGCGCCGACTCCGACGACCCAGAGTGTATCGCCGAGTCCACCAGCAAGCCCAAGGCCAAGGTGGTGATGCCCGTGCCTGTCAAGACCGCCACAGTCAAAGTATGCAACCCTTATATCGACCCCTACTGCCCCTTCCCCATGATCCCTAAGATTGCCGCCCCAGCCACAGTCAAGGCCGCCCCAGTGCCTGTCCTGACACCCCTCCCGCCGCACCCTCAGAAGACCCCCACAGGGTTCTACTACTATGCCCCAGTCCTGGAGCCCTTCCTCACCGCCGAGCAGAAGATGGAGCTGCTGCGCATCTGCAACCCCGACGACACCGAGTGTCTGCAGTACCACTTGCGTGCCGCCTATGGCTATAGGCCCGCTCCTGGACCCGCCCCGTCCTACGCCGCCCTGGGCTGCGATCCCACCGAGGACCCCTATTGCCGGCCAAAGCTGGTGAAAAAAGCCCCCTCCAGCTTCTACAACATGTACCCCACCTGCGACCCGGCCACCGATCCCCTGTGCATGGCTAGCATGGCGGCCCCATCTCCCGCTGCCAAGGAAGCCCCCAAGGAGCAGCAATGCAACCCCCTCTTCGACAAGGGCTGCAACCCCCTCACTGCCACCAAGTTGGCCGGCCTCACCAAGCCCGTCCTGGAGAACACACCCAAAGACAAGTCGGCGCCCGGCACTCAGGCGTGTGACCCGCGCTATGACCCATTCTGCCTGCTAGGTGCCACCGCTGCCCTCCATAAGGCTCCCCCCATGCTGCCCCAGTACCGGATCCACTCCCGCCTGGGCGTCCTTGGGAAGACCAAGGAGGGCCATGACTGCTACGTGCACTACGATAAGGGCTGCACGCCCTCGGAGGCCAGTGATGAACCCAACGCCCCCGTCGCACCCCAATGCCACCCCTATGACTTTACCTGCAATGGAATGTCTGCCCCTTCTCCCCTCACCGCTGAGGCCGACAAGCCCAAGAGTGGCGTGATCCTGCCCGATCCTGACTGTGACCCCGAGTACGACTACAGCTGCCGCCTGCGTCGTGCTGAGGATGCCTCCGCCGCAGCAGAACCAGTGGCCAAGGATGAGCCAGTGCAGCAGGATGCTGCCCCCGAGTATGCCGTCCCACAGTTTGAAGACTTCCTCAGAAGCTACATGGCCATGGATCAGTACAGGAAGaagtaaacacaaacacaaatcTCAACTAGATATCTAAATAGCTAGAACCGGAGGAAAGTGATACAAGTTCATAtgttatacatacacacactcagtcCTCCCAAGGTGCTAACACATCTCTAATGGTCAAATACTGCTAAAGCAGGACGACTAGGGTCATCAGAAAAATCCATACCTGCAATAGTGAATCAGATTCGCTCAGTTACATTGCCTGAAGGTGTATTATTTTACCGTCTGTGATATATGTGGGGAACCCAACATGAGTCCCTCTAAGTTTTATGAGCCCATAGAAGACTATGTGAAAGGTGTGCATTAAATACTAGGCTTGTCTCTAGAAAATGTATGTGTTTGTAGAATAGGGGAAGCTAGCATACTTGAAGACTGATCTGTGCCTATGTATGTTTTCTATGGTTGTACATTGTCTATTTCTAGTTTATTGTGAACATAGTGTCTCTTGTGTGTATTTAATGTTGTTTTCATAGCTTTTCTAAAACCTATTAACCTCAAACCCTTCCTctggttagatttttttttaaagttccaaataaaacattttaaaacaa

Function

NR:

description
uncharacterized protein LOC110530012 isoform X1

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0033333 fin development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612768.2 True 2252 mRNA 0.54 5 49964914 49970082
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530011 LOC106568709 coding downstream 27913 49866272 ~ 49937001 (-)
LOC118965522 NA coding downstream 78688 49881643 ~ 49886226 (-)
zgc:110269 LOC106568705 coding downstream 309756 49647933 ~ 49655158 (-)
LOC110530006 LOC106568704 coding downstream 317066 49635475 ~ 49647848 (-)
LOC110530005 NA coding downstream 334145 49629577 ~ 49630769 (-)
LOC118965625 NA coding upstream 13307 49983389 ~ 49986205 (-)
LOC110530015 LOC106568800 coding upstream 123415 50093497 ~ 50095929 (-)
LOC110530016 LOC106568717 coding upstream 367649 50337731 ~ 50366270 (-)
LOC110530021 LOC106568720 coding upstream 442898 50412980 ~ 50434788 (-)
LOC110530027 LOC106568725 coding upstream 695549 50665631 ~ 50674317 (-)
G718598 NA non-coding downstream 16791 49947768 ~ 49948123 (-)
G718594 NA non-coding downstream 20686 49943716 ~ 49944228 (-)
G718590 NA non-coding downstream 29878 49934833 ~ 49935036 (-)
G718581 NA non-coding downstream 40034 49924642 ~ 49924880 (-)
G718580 NA non-coding downstream 40586 49924061 ~ 49924328 (-)
G718625 NA non-coding upstream 24844 49994926 ~ 50001193 (-)
G718663 LOC106568713 non-coding upstream 81363 50051445 ~ 50059575 (-)
G718648 LOC106568713 non-coding upstream 98431 50068513 ~ 50071983 (-)
G718780 NA non-coding upstream 270919 50241001 ~ 50241249 (-)
G718781 NA non-coding upstream 271582 50241664 ~ 50241894 (-)
G718489 NA other downstream 127218 49785674 ~ 49837696 (-)
G716488 NA other downstream 1175952 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1182399 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1203751 48759912 ~ 48761163 (-)
G719151 NA other upstream 966846 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1282273 51252355 ~ 51259061 (-)
G721275 NA other upstream 2790957 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 3493100 53462034 ~ 53478913 (-)
G722459 NA other upstream 3528066 53495804 ~ 53499730 (-)

Expression

LOC110530012(LOC106568711) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

LOC110530012(LOC106568711) Expression in each Bioproject

Bar chart with 7 bars.
LOC110530012(LOC106568711) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network