XLOC_025799


Basic Information

Item Value
gene id XLOC_025799
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56821699 ~ 56822203 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052809
CCAAGACAGGTGACAGGTGAAGAAATTATTGGCAAATTTCATCATTCACATCGACTACCAAAGGTAAGGTAATGCTTGTCATTTCCCCCAAAATACATTAGGCACAATCAACCTTAAAATACAAGACTTTTGTTTTCTTGTGTGTAGGGTGTGAGATGGCTTTTCATCACAGGATCTCGTTGTTACTCATCTTCTCAAGTCCAGTTGGTAAATTGTTCTTGAGCTGCATCTGTTGAGATATAGAgcaaggtttatatatatatatatatatatatatatatatatatatatatattttattttattttttttttttaccgtaaacAGTAAAAGTTTATTAAGTGTTTAATGCAATTTAATTTGGAATATCTTTATCTGCTCTTACAGTTTTACCAGATTCATGTGACAGTCGGTGCCTGGCAAAAAAACTAATTGATAAGAAAGAGATGATTGCGCCACAGAACATTGACTGTTCTGTCACTGTAAACATCACATCAGTGCAGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052809 True 505 lncRNA 0.32 1 56821699 56822203

Neighbor

gene id symbol gene type direction distance location
XLOC_025798 rnf213a coding upstream 7776 56699187 ~ 56813923 (+)
XLOC_025797 CR759836.1 coding upstream 135753 56645710 ~ 56685946 (+)
XLOC_025796 CU019632.1 coding upstream 198827 56619195 ~ 56622872 (+)
XLOC_025795 rac1b coding upstream 227414 56574623 ~ 56594285 (+)
XLOC_025794 cacng5b coding upstream 427681 56366395 ~ 56394018 (+)
XLOC_025800 amn coding downstream 54077 56876280 ~ 56877918 (+)
XLOC_025801 otop2 coding downstream 82900 56905103 ~ 56918442 (+)
XLOC_025802 NA coding downstream 127752 56949955 ~ 56957558 (+)
XLOC_025803 bahcc1a coding downstream 215830 57038033 ~ 57174041 (+)
XLOC_025804 fscn2a coding downstream 411890 57234093 ~ 57257075 (+)
XLOC_025429 BX649540.1 misc upstream 26572663 30248739 ~ 30249036 (+)
XLOC_025793 NA non-coding upstream 461049 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 713790 56099256 ~ 56107909 (+)
XLOC_025790 NA non-coding upstream 1167435 55646873 ~ 55654264 (+)
XLOC_025789 NA non-coding upstream 1333458 55482120 ~ 55488241 (+)
XLOC_025806 NA non-coding downstream 603957 57426160 ~ 57480996 (+)
XLOC_025807 NA non-coding downstream 612058 57434261 ~ 57436304 (+)
XLOC_025808 CT573423.1 non-coding downstream 814171 57636374 ~ 57641090 (+)
XLOC_025809 NA non-coding downstream 944421 57766624 ~ 57768666 (+)

Expression


Co-expression Network