LOC110529118 (LOC106598598)


Basic Information

Item Value
gene id LOC110529118
gene name LOC106598598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50004981 ~ 50007814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611260.2
CCCCACCACCATGCCACccccactccaatacattgaaaTAGGTGTCTGTAACCCACTGAACATTACTGTAACCAGGTTGAGCATCTGAACAAGTAAAGACCCCAAGATGCAGGCTCTACAGGTTTTGTCTCTGACTCTGCTGTCCGTTCTGGCAGCTAACGCCCAGACCTTCCGCCCTGGAAAATGCCCCCAACCCCCCGTCCAGGCAAACTTTGACACCGCCAGGTATCTGGGCAAGTGGTATGAGATCCAGAAGCTCCCTGCCATCTTCCAGAAGGGCGAGTGCAGCACTGCCACCTACTCCTTGAAGAGCCCCGGAGTAGTTGGTGTGCTCAACAGGGAGCTGCTgtctaacaacactgtcaaTGCTATTACTGGCTATGCTAAGGTCAAGGACCCCTCTGAGCCCGCCAAGCTGGAAGTCACCTTCTTCGAGGACTCTTCCCCTGGCCCCTACTGGGTGTTGTCCACTGACTACGAGGGCCACTCTGTGGTCTACAGCTGCACTGAATTCCTGGGTGCCTTCCACGTGGACTTTGCCTGGATCCTGAGCAGAGAGCCAACCCTCTCTAAGGAGAAACTTGGGGAGCTGTACGACGTGTTCACCTCCAACGGCATCAACATCGACGTGATGACCGTCACCGACCAGAGCAAAGAGCTGTGCGTCGACATGCCTCTGCGGGCCTAAGAGACTACCTGATTCAGTCTAGAAAATGCATATGTTTTACATTCATCTCATGGCATGCACATAGAGTCCAAATTATTAGAACATGTAAGCACCTTCATCTGCGTTTCAGCTGTGGATTTGATCTACGCAGGTGCTAGCACCAGCCGAGTGAGCCTCCCTCTTTTAGTGCGAGTGAAGTGAGTTTGGAACAACTGAATGTATGCTCCTTAgaagtagttttcacatacaaacatgtttacaaattaatacaatattaaaagctgaaattgattataagtattcaatccctttgttatggcaagcctaaatcatttcaggagtaaaaatgtgcttaaca
>XM_021611259.2
aggtattactgcaccgttggagctaggaacataagcattacGCTACACCCGTGATTACATCTGCCAaatatgtACCCCAAGATGCAGGCTCTACAGGTTTTGTCTCTGACTCTGCTGTCCGTTCTGGCAGCTAACGCCCAGACCTTCCGCCCTGGAAAATGCCCCCAACCCCCCGTCCAGGCAAACTTTGACACCGCCAGGTATCTGGGCAAGTGGTATGAGATCCAGAAGCTCCCTGCCATCTTCCAGAAGGGCGAGTGCAGCACTGCCACCTACTCCTTGAAGAGCCCCGGAGTAGTTGGTGTGCTCAACAGGGAGCTGCTgtctaacaacactgtcaaTGCTATTACTGGCTATGCTAAGGTCAAGGACCCCTCTGAGCCCGCCAAGCTGGAAGTCACCTTCTTCGAGGACTCTTCCCCTGGCCCCTACTGGGTGTTGTCCACTGACTACGAGGGCCACTCTGTGGTCTACAGCTGCACTGAATTCCTGGGTGCCTTCCACGTGGACTTTGCCTGGATCCTGAGCAGAGAGCCAACCCTCTCTAAGGAGAAACTTGGGGAGCTGTACGACGTGTTCACCTCCAACGGCATCAACATCGACGTGATGACCGTCACCGACCAGAGCAAAGAGCTGTGCGTCGACATGCCTCTGCGGGCCTAAGAGACTACCTGATTCAGTCTAGAAAATGCATATGTTTTACATTCATCTCATGGCATGCACATAGAGTCCAAATTATTAGAACATGTAAGCACCTTCATCTGCGTTTCAGCTGTGGATTTGATCTACGCAGGTGCTAGCACCAGCCGAGTGAGCCTCCCTCTTTTAGTGCGAGTGAAGTGAGTTTGGAACAACTGAATGTATGCTCCTTAgaagtagttttcacatacaaacatgtttacaaattaatacaatattaaaagctgaaattgattataagtattcaatccctttgttatggcaagcctaaatcatttcaggagtaaaaatgtgcttaaca

Function

NR:

description
apolipoprotein D-like isoform X1

GO: NA

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611260.2 False 1025 mRNA 0.49 5 50004981 50007814
XM_021611259.2 True 1000 mRNA 0.49 5 50005327 50007814

Neighbor

gene id symbol gene type direction distance location
LOC118965615 NA coding upstream 150546 49853027 ~ 49854435 (+)
LOC110530010 LOC106568707 coding upstream 158553 49775515 ~ 49846428 (+)
nyap2b LOC106568706 coding upstream 256592 49720662 ~ 49748389 (+)
LOC110530003 LOC106568702 coding upstream 404878 49591230 ~ 49600103 (+)
LOC110530001 LOC106568699 coding upstream 440197 49506784 ~ 49566389 (+)
LOC110530925 LOC106568799 coding downstream 7364 50015178 ~ 50038484 (+)
LOC110530014 LOC107558802 coding downstream 35528 50043342 ~ 50071991 (+)
LOC110530017 LOC106568715 coding downstream 138550 50146364 ~ 50336325 (+)
LOC110530020 LOC106568719 coding downstream 371957 50379771 ~ 50383088 (+)
LOC110530019 LOC106568718 coding downstream 376482 50384296 ~ 50397007 (+)
G717779 NA non-coding upstream 69575 49935196 ~ 49935406 (+)
G717768 NA non-coding upstream 83884 49920708 ~ 49921097 (+)
G717767 NA non-coding upstream 84532 49920234 ~ 49920449 (+)
G717765 NA non-coding upstream 86458 49918307 ~ 49918523 (+)
G717764 NA non-coding upstream 87350 49917375 ~ 49917631 (+)
G717952 NA non-coding downstream 230142 50237956 ~ 50238209 (+)
G717953 LOC100136012 non-coding downstream 230441 50238255 ~ 50238481 (+)
G717954 NA non-coding downstream 233839 50241653 ~ 50242025 (+)
G717955 NA non-coding downstream 235005 50242819 ~ 50243034 (+)
G717970 NA non-coding downstream 270895 50278709 ~ 50278971 (+)
G716993 LOC100136012 other upstream 457896 49546212 ~ 49547085 (+)
G716862 NA other upstream 671209 49332841 ~ 49333772 (+)
G716133 NA other upstream 1244241 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1460817 48537743 ~ 48544164 (+)
LOC110530024 LOC106568723 other downstream 628882 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3369418 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3662582 53670348 ~ 53674103 (+)
rps28 NA other downstream 3918403 53926018 ~ 53927959 (+)

Expression


Co-expression Network