LOC110530925 (LOC106568799)



Basic Information


Item Value
gene id LOC110530925
gene name LOC106568799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50015178 ~ 50038484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036985559.1
GCGGTATTTAAAGTTATTTTTTGGTTAAGGCCTTTAGTTAGTCGTTAGCTATTGACACAGAACAAGGGTGTGGCTGATTGGCTGATCAGTTTGAGTTGTCACTTAACTTTTCAGAGGTGTCTAGCTAGGCTACTATACCAAGGCACTAAGGTGTCTGTCACCATCAGATATTGTGAACTCCTAACCTGAAGATCGAGTGTAGCTTTAAGGTTTTGTACTGCTTTTTATTGTAACGAGATTACCTTCTCGTTCTGTCTACTTCGTTGGGACAAGCCAGTCACAAGCTCTTCTCATTGGTAGGAACTTGAAGAAAGGTCGGGTCATGACCCCAAGGGAGCAGCTGAGGAAGATGTCAGTGATGGGGGAGCAGGGGGCTCTGGACGAGAAACATTGGTACCGCCTGGTCAACGGCATATCTGCTGGAGAGCTATGTCAGAGGCAGGAGATGATGATGAGGAACCAGATAGCCATGGCTCCTCAGATCCTGGCCCAAGGACAGCAGAGGATACAGGGGGTGCCCACCCAGTTTGAGCCTCGCTTCATGGAACGAGAGCTAGTTCCACCCTCGGAGATGGTATCTTCCGAGGCCAGGCAGATGCACATGGGGGGTCACCTGGGTCCGCCCATGCCCCCACACCCTGGAATTTCTGGCAGGGGCTTCCCTGGAGTTGGTTACAGTTTCATGCCCTCAGAGCCCATGGAGACAGTTGCCCGGCGACAGGAGCTCATCCACAAGCAGAATATCGCCAGGATGGAGATGAATGCCATCCTCCACCAGAAGGAGATGGAGAACGCCCATCAGAAGGGTCTGATGGGTATGGATGCGCCCATGATGTACCAGTCCAACGCTATGGCACTCCGGGGGCGCCAACGCCTCCCAGACGGCCACGACTTCTTTGTCCACCGTACCACCCTGGAGGAAATGCAGGCCAACAACCTCCTGATGTCCTCCAGCCCCTATCCACCAATCAGCACGCTGCAGAGGGAGAGGGGCCGCAGGGCTGGTCGCAGGGCAACTAATCACAAGAGTGCAGAGAGCCATGCGTCTGGACACAAGGGCCAATCGGAGGACAAGAGCGTGGAGCAGAGTCCCGGGGGTGCCTCTGGAGATGAGAAAGAGGCAGAGGGGAAAATGGACATGGGAGGGGAGGCAGTCGGCAAACAACATCAAGCCAAAATGGACACAGAGCTCTCGTCGAATGGCAGAAAGAGCTACAAGGAGGCGGCTCAGGGCCTGCGAAAAGCCTGCATAAACAGTCAAGATGGCTGCCCTGACGGTACCAACTGCAACAGTGGCGCCAGCGACAAAGACAGGCCCAGTCAATGCTCTGCGTTCCAGTATCCCTCCGCCAGTGGACCTATCCCAGGCATGCCTTACATGTTCCCTCCTGGGCCACCCAATCTCTTTCTTAACGGACAAGATATGTCCTCTGTTGAAGACCTTAGGAAGTGGACAGTGAATGACGTGTACATCTTCATCAAAAACATGCCCAGCTGCTCTGAGTATGCTCAGACGTTCAAGGACCACATGATAGATGGAGAGACATTGCCATTCCTGACAGAAGACCATCTACTGGACACGATGGGACTGAAGCTGGGCCCGGCACTCAAGATACGATCACAGGTCTCGAGCCGGCTAGGCAGCATGCTCTACATGATGAGCCTCCCACTCTCTGCTGCCGCCGCCCTACAGGCCACATCTGAGAAGGCAGGAGGAGACAGATCGTCAGAGATCAGCTCCCCTGTATACTGTAACAGTGTGGAGATGATGGGCAGCCCCTGCACCAGAGACCCAGAAGGACGGAAACCCACAGACCCCCTCCCAGAGACTGACAACCCCTCTCCCCCCTCGGCCAGCAGTGAAACTGCCTGAGGCATCAATGAGGGAGGTACGAGTCCTCGGGCCAGTGACTCAGTTCCAAGTCGACCCCTAGCTCctaccacatactgtacatatagacACAAACCCCCTAAGGACTTAATGTAGATCTTTAAGCTTTGGGTGGGTATAAGTAATGGATGCATCTTGCCCTCTGATTGGCAAGGTGGAATGTTAATTTAATCTGTCCAATCCTTGCAAACAGTCAGAAGTGCATAGGTAGTAGGAAGTAGGGGTCAATTTGGAATTCAGCAAGTGTTTCAGCCCTAAGAGCTGTTTTTAAGCTGCTTACCATTTCCATCAGGCTattgtgttcaaatcaaatccaattgtatttgttacgtgcgccaaatacaacaggtattacggtgaaatgcttacttacaagcccctaaccaacaatgcagtttttagaaAATACCTATAAAAACCGTAAgaataagaaaaacaaataattaaagagcagcagtaaataacaatagcagggctatatacagggggtatcggtacagagtcaatgtcaatgtgcgggggcagcctcctgggtg

Function


NR:

description
sterile alpha motif domain-containing protein 7-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036985559.1 True 2427 mRNA 0.52 7 50015178 50038484

Neighbor


gene id symbol gene type direction distance location
LOC110529118 LOC106598598 coding upstream 7364 50004981 ~ 50007814 (+)
LOC118965615 NA coding upstream 160743 49853027 ~ 49854435 (+)
LOC110530010 LOC106568707 coding upstream 168750 49775515 ~ 49846428 (+)
nyap2b LOC106568706 coding upstream 266789 49720662 ~ 49748389 (+)
LOC110530003 LOC106568702 coding upstream 415075 49591230 ~ 49600103 (+)
LOC110530014 LOC107558802 coding downstream 4858 50043342 ~ 50071991 (+)
LOC110530017 LOC106568715 coding downstream 107880 50146364 ~ 50336325 (+)
LOC110530020 LOC106568719 coding downstream 341287 50379771 ~ 50383088 (+)
LOC110530019 LOC106568718 coding downstream 345812 50384296 ~ 50397007 (+)
LOC110530022 LOC106568721 coding downstream 396451 50434935 ~ 50441957 (+)
G717779 NA non-coding upstream 79772 49935196 ~ 49935406 (+)
G717768 NA non-coding upstream 94081 49920708 ~ 49921097 (+)
G717767 NA non-coding upstream 94729 49920234 ~ 49920449 (+)
G717765 NA non-coding upstream 96655 49918307 ~ 49918523 (+)
G717764 NA non-coding upstream 97547 49917375 ~ 49917631 (+)
G717952 NA non-coding downstream 199472 50237956 ~ 50238209 (+)
G717953 LOC100136012 non-coding downstream 199771 50238255 ~ 50238481 (+)
G717954 NA non-coding downstream 203169 50241653 ~ 50242025 (+)
G717955 NA non-coding downstream 204335 50242819 ~ 50243034 (+)
G717970 NA non-coding downstream 240225 50278709 ~ 50278971 (+)
G716993 LOC100136012 other upstream 468093 49546212 ~ 49547085 (+)
G716862 NA other upstream 681406 49332841 ~ 49333772 (+)
G716133 NA other upstream 1254438 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1471014 48537743 ~ 48544164 (+)
LOC110530024 LOC106568723 other downstream 598212 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3338748 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3631912 53670348 ~ 53674103 (+)
rps28 NA other downstream 3887733 53926018 ~ 53927959 (+)

Expression



Co-expression Network