LOC110530014 (LOC107558802)


Basic Information

Item Value
gene id LOC110530014
gene name LOC107558802
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50043342 ~ 50071991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612770.2
CGCGATACTACCCGTACGTGAACACACGTCAGACGAGCAGTGTTGGAGGATCATGGCGGAGCGCAGGAGGCATAAGAAACGGATCCAGgagGTGAGCGAGCCCACCAAGGAGGAGAAGGCAGTGGCCAAGTTCCTCCGTTTCAACTGCCCCACCAAATCCACTAACATGATGGGCCATCGGGTGGACTACTTCATTGCCTCCAAGGCAGTAGACTCTCTGCTGGACTCCAAGTGGGCCAAGGCCAAGAAGGGAGAAGAGGCTGTGTTCACCACCAGAGACTCTGTGGTGGACTACTGCAATAGGCTGCTGAAGAAACAGTTCTTCCACCGCGCTCTGAAAGTCATGAAGAAGAAGCCGGAGAAGGACATCAAGAAAgataaggagaaagagaaagagaaagaaaaagagaaggcTAAGGGCGACAGCggcaaggaggaggagaagaaggggaagaaggagaagaaggatgcCAAGGATGCCGAGGCTTCAGATGCAAAGAAGGAGAAGAGTgATGATAGCCCCGGAATgccaaagaagaagaaagatgCGAAGAAGAAGTTCAAACTGGAGCCTCATGAGGACCAGCTCTTCCTGGATGGGAATGAGGTGTTTGTTTGGATCTATGATCCGGTCCATTTTAAAACCTTTGCCATGGGACTGATTCTGGtAATTGCAGTGATTGCGGCCACTCTTTTCCCACTGTGGCCGGCTGAGATGCGTGTGGGTGTGTACTACCTGAGCGTGGCAGCAGGCTGTTTCGTGGCAAGTATACTGCTGTTAGCTGTTGCTCGCTGCATCCTGTTCCTGATCATCTGGCTGGTGACGGGCGGTCGCCACCACTTCTGGTTCCTGCCCAACCTGACTGCCGACGTGGGCTTCATCGACTCCTTCCGCCCGCTCTACACGCACGATTACAAGGGCCCACGGGGCTACAGCAAGAAGAGCCCGGACAAGACGGAAGGCAAATCCACCGATGCAGACGCAGCCAAGGCCCAGAAGTCGGACAGCGAGGAGAAGGGTGAtggtggggaggaagaggaggaaggagaggtggaaaTAGAAGAGGGTGAGGGCACAGCGCCGAAAGGGACGGAAGAAAACGAGGTGACTGAGGCGGCTGGGACGTTGACGAGCGCCGCCGAGCGCCACTCAGACACGGACAGCGACCGCCGGGAGGACGAGGGCTCGCAGCACAGCAACGGAAACGACTTTGAGATGATCACCCGTGAAGAGCTGGAGCAGCACACGGAAGGAGCGGGggaaagaggagtggaggagaagggagacgGTGAGGCAAAGCCCTTGTCTGTTCAAACATAAACAttatcactaccaccacctccttctcctcctctgaaGGATCTCCTCCAGGTCCTCTCTCAACCTCGCTGAGGAGACACCTCCCCATCTTGTCTGCTCCGATCTTCCACTAACTATACTGTACCACGTCTGTCTTGGTATTGACACCGGTGAAACGAAGCAAACGGCTATGACAatggaaaagagaagagaagaaaaaaaacgccTTATTGTGGTTCTGAAATTATTTCAACTGAGAAATGCAAACTAACTTAACAGATGTGCTTGTCTGAGGAAGTTGTCTCGATTGTTCTCCCGATGTTTTCCCAATTTTTTGGTACTTACGTTATGACTTTATCCCATATCATCCTAGTTCAGAAAGACTCATCTGCTCTACATGTTATGTGTACAATGGTCCCTTGTATGTCTTGTTTTTGTACGTGAGGCAAAGTTTTTAGTCAATCTCCACAGATGAGGGAATTCTAGAACAATGGAATCCTTGTTTTGCCAGGATAAATACTGCCATCTTCTCTACCTGTCCCTCAAATCCTGACTGTGGTCTTATGAAAGATGTGTGATTGGTACAATCAAAGTAAAGTTAAGCTCAGTGTTGTGTCCAGTAGGCACGTTTTCCCTACTCAAACCAAACCTTTCCTTTGGACCATTGTCACACAACTGGGCCAAGTGTCCTGTACTAGCAGTGGCAGCTGGCCCTCTACACGGTTCAGCTCTTGTATTTGGACTAAAGCCAGAATCTGATCTCTCGTAGGCAGCCATCAAGTTACAATTGACCAACCGCTGGCTGCGCCAATATAACTAATCTGGAGGGACCAGAATCTGTAGTTTCTCCCCcagccttgtttttttttttttttttgcagtgctTTCTGTTTTCAATGAGAAATGCTTGTTTGTATGGTTGATCATGATCATCGtgcagttctgcacacacataaAATCTGAGTTTCGCAAGAGTCATGTCCATTACATAAGAGTAGTGTCCATGAGCAGTGGCACTAATTTTAAGTGTAAAACTGATCATCTAAAATATTCCTTACTAGAATGACTTTATTTGAGGCCACACATGTGCAGGCAGCAAAGATAGAATGGAAAAAGGGTTTGAGGTTTGTATGcaccattttagaatgaggcgtCAAAATGAAATAGTGCCAAACACGTAAATTGTTGTTGCAATGCATGCTGTTTTCATACGAGAAGACATGTCAAAAGTGTCAGCAAGGGATTTTGGTAcaattattcatttttttttaactagtGTCAAATTCCAAACCTTTTGAATACAGAGCAGTATAGGAGCCAGGGCATTGGTTTGTAGACTTCGATCCCATTCTCCCTTCAGTTCTATTTAAGCCATGCAAAGCAGACAGTGTACTTAATACTATTATAACAAACTATCGTATAATGAAGATGGTAGGCTTGTTGTCAGTTCAACTCGGATGCCCATCCTTTCATGATTGCGTTTGTTGTGTTGCCTTCATTGGTATTCTAGTCAAGCTAACAGACGACGATGAAGACCCCTGTGAATGCATGGAGACTCCATTTGAAACCAAATGGGGTCGTGGTCTAATTCTCCTCAATTGTTGCGATATGTGGGCTGTGGTCCAAGACTGTCCATTCGTAAGGTCACATTTTTTACTCATAGTGAGGATAAAATAGATAAATGTATCATTTATATAATGATATCTATTGATatatcaagtgtgtgtgtgtatatatatatatatatatatatatatatatgtttatataaatatatatatacacacacacaaacttagtCTGAGAAATTATGAACCTACTTTGTTCAACCTGAACAGAAACATTTTTGTTTAGGTTTTTGGTATCAAGACTTATTTTcataatttatttgtatttttattaaacTTTTTTTGCTATAATTTTGACCTCCAATAGGTATATTGTCAAGAGTGTACTGTACTCATTATTGGGTACCTTCAAACACTAGAAATGTGGATTATGTTATGTGTGGATcagattttgttttattttatattgATCGATTTTACACTGTCATTTCTTTGAATGTGTGAAGAGTAATGTAGCTAGTTTGTCCATTTGGCTACTTACTTTAAGTCACGTAAGAATAGTGAATGATTAACTAGTGGTTGAGAAACTCATTGGCAGTGGCTTGCATAACATTTATATTGCTCTTCCACACAAAATGTTCTGGGTGGAATGTTCTCCCCACAGTGGAATGGTAGAGCAGAACGTGTGAGAGCAAGGGGGGGGGAGAGTCACTTGAGGGCTTTGATACCACGCACCCTACACAGATCGACCCAATGTAGTCGACTGAGGAGTATCTTCGAGACGCTCATATCACACTATTTTGTAGTGCCGGCTTGTTCCTGGAACTATGCTGGATGTGTAATCAGACAGGCGGTGCATCTCTGTTCAGGCTCACTAGTGTGAAAAGGGGTACAAGTACTCAGTCTTGCTTTCCTCTTCGAAGAGCATGTTAACCTCCGATTTTTAGGCCTCCAGCTGGTTTCTTCATCAACGTGTTTCCCTGAACTCTTCTCAACAGCGTGTAGCTCTTCTACAGGACACGTATACTACTAACAACTGCACATCGTGtagcttttttttgtctttttctaAGTATGTTTGTTTTAATTGCTTTTCTGTTTCCTGATGTCTTCTGGAAAGCGAGGTGCCAGTAGCTGTATTATGAATTTGGGCTTTTTCATGAAAATCTCTAATTGTTCTTTTGAGTGTTCTTCGTGCACAGTCTGTTGTATATTGTAGTATTAAACTATGCTGCTTTTCCCCTCATCAAAATACATGTTCTATCTGGTCAAAATGTCTTTAGTCATGTAGTTGTCCATATTTGGATCAATATCAGAGAGACTGTCTCTTGCAATATTGGAATATAATTTAATTGTATATCTGTATCTTATCATTGCAATAAATATAGAACGCAATTGA

Function

NR:

description
translocation protein SEC62-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12275 SEC62; translocation protein SEC62

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612770.2 True 4267 mRNA 0.44 8 50043342 50071991

Neighbor

gene id symbol gene type direction distance location
LOC110530925 LOC106568799 coding upstream 4858 50015178 ~ 50038484 (+)
LOC110529118 LOC106598598 coding upstream 35528 50004981 ~ 50007814 (+)
LOC118965615 NA coding upstream 188907 49853027 ~ 49854435 (+)
LOC110530010 LOC106568707 coding upstream 196914 49775515 ~ 49846428 (+)
nyap2b LOC106568706 coding upstream 294953 49720662 ~ 49748389 (+)
LOC110530017 LOC106568715 coding downstream 74373 50146364 ~ 50336325 (+)
LOC110530020 LOC106568719 coding downstream 307780 50379771 ~ 50383088 (+)
LOC110530019 LOC106568718 coding downstream 312305 50384296 ~ 50397007 (+)
LOC110530022 LOC106568721 coding downstream 362944 50434935 ~ 50441957 (+)
LOC110530023 LOC106568722 coding downstream 371713 50443704 ~ 50578861 (+)
G717779 NA non-coding upstream 107936 49935196 ~ 49935406 (+)
G717768 NA non-coding upstream 122245 49920708 ~ 49921097 (+)
G717767 NA non-coding upstream 122893 49920234 ~ 49920449 (+)
G717765 NA non-coding upstream 124819 49918307 ~ 49918523 (+)
G717764 NA non-coding upstream 125711 49917375 ~ 49917631 (+)
G717952 NA non-coding downstream 165965 50237956 ~ 50238209 (+)
G717953 LOC100136012 non-coding downstream 166264 50238255 ~ 50238481 (+)
G717954 NA non-coding downstream 169662 50241653 ~ 50242025 (+)
G717955 NA non-coding downstream 170828 50242819 ~ 50243034 (+)
G717970 NA non-coding downstream 206718 50278709 ~ 50278971 (+)
G716993 LOC100136012 other upstream 496257 49546212 ~ 49547085 (+)
G716862 NA other upstream 709570 49332841 ~ 49333772 (+)
G716133 NA other upstream 1282602 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1499178 48537743 ~ 48544164 (+)
LOC110530024 LOC106568723 other downstream 564705 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3305241 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3598405 53670348 ~ 53674103 (+)
rps28 NA other downstream 3854226 53926018 ~ 53927959 (+)

Expression


Co-expression Network