LOC110530016 (LOC106568717)


Basic Information

Item Value
gene id LOC110530016
gene name LOC106568717
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50337731 ~ 50366270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612772.2
CTATGAGAGGATTCTAAAGAGGTATTTGCCAAGCAGCCACGGCATCCCACTCTCCCTGATGGTACCTCCTtctaggagagagacagacaggcagggctgAGATGAGAGAGAAGTGACTGGAGAAGTACTGGAACTCAGACTGGAGTGGATACTCTGACACCCTCACATCAGGTTACAGTGGAGAACACCAAAATTGTTAAAGGCAATCACCTGATTTACACCACAAGAACAGAGTCACAACACCTGTAGAAGTTGGCAAGAGGGAAGACACACTCCGACTGGCACTCAGACTACCAACAACCAGATAATGTGCCAACAAACAATACTCACAGCTGAAGCCTGCAAATGATGGACAAGCAAAATGGAAATGGGCCCAAAGCCCCAGAGAATAGGGTGACGGGGAAGCCTCCTCTGTACTCGGTGGAGACGCCCTATGGATTCCACCTGGACCTGGACTTCCTCAAGTACGTTGACGACATCGAGAAGGGCCACACCATAAAGAGGGTCCCCATCCAGCGCCGGAGCAGGGGGCAGAGGCCCAACACACTCCCCAGACACCTCAACCTCTCTGGGCTTGGCTATCGGCCTACCCCCTGGGGCTCCACTGGAGCTCTGGCCCCCAGGTCTCGCCTAGCCGACCCCCACTATGGCTCCTGGGCTTATGATGGCAGGTCGTCAGCCTCCTCTGGACGGTATAAGTCTGTGGCTGAGATGGAGGCCAGTATCCGAGCCTTTGATGAGCAGCCCTTGGGGGAGCACATCAGGCCAAATCTCCTGCGGGCCTCCAGCCTACCTCTCACCGTCCTGCTGAGGAAAGATTCCGAGTCAACTGAAAACCCGGCCAGTCTCCGAAGCTCCAGAGACCGTCTCGGAGGAAGGGACATGTCCACAGAAGACAGCTTCTACTCCCTGGACTGCTCATCCGACTTTCGGTCAAACCAGGACTTTTCTGGAACCCTCCGCCGCCTCACCGAAGCCCTGGAGCGCGTTGGCGAGCTGGAGGAGGAGGTCCGGGTCATCCCGGAGCTCAAGGCACAGATCTGCATcctgcaggaggagagggagaggttccGTCTCGGACTGAATCCCCGACCCAGATCCCAAACCCTGGTCAACGGGGCCAAAAACCCCTCTTATGCGACCTCTGACCTCAAAAGACCCAGGAAAGAAAGTCATCTCTTCACCCACAACAACGATGTCACCGATGACGACTCTAACCAGACACACGAATGGAGGACGAGCACAGACCTAGACGAGCTTCTTACAGTGACATCCCTGCAAGCCAAAGTGGCCATGCTGGAGCAAAGGCTTCATGAGAGCAGCTTGGACCTCCAGAACGCCACCTTGCTGCTGAGAGAACAGCAGGAGGAGGGCCGGAGGAAGGAATTGAGGATGAAGCAGCTCACCAGAAACACTGAGGGCTGGGTGAGAGCGGAGAGAGTCCCAGTGGACCAAGATGATGAAGAGACCGATAATTATTCTAGGTGGTCTTTAGCAGGTGCGCATGGTGCGTCCAGTCGAGAAATGTTTAATGAAGGAGAATCTTTGTCGACCAATGCAGTGGCCATCGGAACAAATAGACAAAACGCTGGCACTCAGATCGAGGGCCTTGGAGATCATCACATTTGGGTTTCAGCTAGCGCTTCCATGATGGAGGCCCAAGCTGGTCAACACAATTCAGAAATGGTGCTCAATCGCTTTAACAGAGAACCAGGCCTGGCAGTAACCACGGAGCACATGCCACAGAAAGAAACCTCCTCAGGTGGCATGGAGCAACCTGTGGCAGCCCTCCACGTGAAGAGGATCCAGGTTCTCCTGGAACAGCAGTGGGGGTGTCTATGTGGGGGGACAGCAACAGAGGGGGGCAAGGCCCTGGCGCACCCAGACCCCAAGGTCAATTCGCTACAGGAGGAGATGATGAGTCTGGTTCATACTCTTTCCTCTTACTACAACAACGGATCCAGTGACGGAGAAGCTTTTCAAGGAGCCCCGAAATCTATCATGAGGAGAAATGGCGGTGCTCAGATGTCAAAGAACCTCCACTTTACGGGTGTGAACAGCGGCTTTGAAACAACACCAAATGAGGATTTGGACAGTAAGAGCCATGAGAATGTGGACATCTCCGACCTACAGCAACAGCCAGAAGGACAACTCCACCCTGGGGAGATGGTGGAGAAACCTGCAGAACACGGTGGTTCCAACCATGGAGACCAGAAAGAGGGAGACCCAAGTCAAGAGATGATGGAAGGAACCGATCCAATGGACCAGACTACTCAATATGTACAACCAGACTCACGTACAGATAGTGGTGAAAATCTGAAAGCTGGAGAACCAGAAAAACAGGCCAAGATAGACACCAACAAAGAGGAACCTATGGAGGCAGAACCAGACCCAAACAGAGATTCCAAACATGAACTGAAAGACAGGGACACGGTAGATGGAGAGTTCATAGCAGCGTGTAATTTCCTCAAAGATCACATGGACAACATGGATAACCCCAATGATGAAATGAGGCGGGCTTTGGTGGTGCTGTTCCGAGATTGGTTCCGGGTGGCGGCTGAAGAGGACTCCTTGGCCAATACCGTGTCTGTGTACCTCAGAGAGGTGAGGAAGGCCACGCCCTCGCTCCTCCCCTTCCTTGTTAACATGGCGGACGACAACGGCAACACAGTGCTGCACTACAGCGTATCCCATGCCAACTACCCTATCGTCAGCCTGCTACTGGACACAGgtgtgtgtgaggtggacCTCCAGAACAAGGCAGGGTACACAACGGTGATGCTGGCCTCCCTAACGGCCCCGGACGGCTCTGGGGACATGGAGGTGGTCCGTAGGCTCATGGAGCTGGGGGACGTCAACGCTCGAGCCAGCCAGgggGGTCAGACAGCTCTGATGCTAGCAGTGAGACATGGCCGGGGCCTGATGGTGCGTCTGCTGCTACGCTGCGGGGCAGACCCCAATGTCCAGGACCACCAGGGGGCCACGGCCCTCATGTGTGCCTGTGAGAGGGGCCACACACACGTCGCCTGGCTTCTGCTGGAGAGGGCCGAGTGTGACACCAGCCTCACAGACCAGCGTGGTCGCACGGCCCTCTTCGTGGCCCAGCAGGGGTCCTACGGTGACATCACAGCCCTCATCCAGGCCCACCACACACATGCTGGGACATCTCTCTGAGACCTTGACCCCCCTGTTCCCGTGGATAGGTCAAAGACGCCACAGTGCAAGGAATGTCCAATCCTAAATGGCAACTtattccctactgtatatagtgcacttttGACTACAATCTAACTAGCTAAGTACATCTAAAAGCTATGGTAGAAAACTGTGTTGGTAGCCTTTTGGCTGTCACTTGACTTCTCCAACACTCACCACTTACTGAGCTCAGCATGTCATGTTAGCATTTCTCACTGACTTCAAGTACTAGGCTCtggccaagagtagtgcactCACTATAcagtagggaatagagtgccatttcagacacagccgaAGATCCCTCACCTCTGCCCGTCTGATTCGGAGGTGGCCcgtctctcttctcatctccatcTTGGGCCACTAAGGTTCAGGTTGGGAGGTCAATATCATTCACTATTCCCAACCATGCTTGGAGTTAGCTCTTCAGTCCACTTCCTGTTCCTGGACAGGAAAACATTTGATTTTAAGACTCTTATGTGCCAGTGGAAGTGTTCTTATGGCAAGCGTGCACTGCTCCAAACTTGGAGTGTGATattgtctgctggtttttgtcCTATTAAAATTTATCCAGGTTTCTATTCATACCTGGGCAAATAGCAAAGTGGACTCGTCAGCCGAGTTCCACAATGGGagatttaaaaacatttaaaaaacagccAAACTGCGGCCCTTGAGACCTCGAGCCGTCTAGCCCCGTGTTATTTTCGAAAATGCATTATTACAGTATATGCTGGACCACCAATGGGTGGATGGGTTGATTGCTCTGCTGGTACTGTATACGTTTCAGTGTCATTATCCCCTGTATGGCATTAGGGGAGTGACAATGTTCTATCTGTGTGTCAACGCCTTTACATCTCTTCACATGGCCTTTATTCTGTGATTGTACGGTGGGGCTTCTATTTTTAATTTCTATTATTTTGACTCCGCCTTACACCATCTCTACCATGTGCAACAGGGAAGAGAGCAACTGTGTTGGATAATATAGAAATCTCAGAGAAATCGAATCTAATTGGTATTCAGGTCTGCACCACTACCCTCTGGGCATTTCATTCAGCTAGAGATAATTATTACAGTAAATAGGCAGTACATTTACATTGATGCTTGTCTGGATTGAACTGTTTCCCACTATCAGCAAAATGTTGCATGTATTTTAAAATATCAGTGCGCTATACTGGTAAAGTTTGTTTCCTTATTATCAAAATCCATTATAGACAAACCAGACAGTGGATTTCTCTACTCATTTTGTATGCATTACTCTTAAAGCTAAGCAAAATTGCTGACATATGACAGTTTTAATTAAATGTCTGATGTTTTTGCCAATGATTTTGTATTGATATGGGGCAAAACACATGACATCCATTGTACTCTGTCTATGCAATGACATAAATGGCCAGCGGATGGCGCTACTTT

Function

NR:

description
KN motif and ankyrin repeat domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612772.2 True 4611 mRNA 0.51 10 50337731 50366270
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530015 LOC106568800 coding downstream 241802 50093497 ~ 50095929 (-)
LOC118965625 NA coding downstream 351526 49983389 ~ 49986205 (-)
LOC110530012 LOC106568711 coding downstream 367649 49964914 ~ 49970082 (-)
LOC110530011 LOC106568709 coding downstream 400730 49866272 ~ 49937001 (-)
LOC118965522 NA coding downstream 451505 49881643 ~ 49886226 (-)
LOC110530021 LOC106568720 coding upstream 46710 50412980 ~ 50434788 (-)
LOC110530027 LOC106568725 coding upstream 299361 50665631 ~ 50674317 (-)
LOC110530028 LOC106568726 coding upstream 311902 50678172 ~ 50685258 (-)
hsd17b7 LOC106568727 coding upstream 324077 50690347 ~ 50710421 (-)
LOC110530033 LOC106568728 coding upstream 349858 50716128 ~ 50729934 (-)
G718784 NA non-coding downstream 86675 50250751 ~ 50251056 (-)
G718783 NA non-coding downstream 87615 50249858 ~ 50250116 (-)
G718781 NA non-coding downstream 95837 50241664 ~ 50241894 (-)
G718780 NA non-coding downstream 96482 50241001 ~ 50241249 (-)
G718648 LOC106568713 non-coding downstream 265748 50068513 ~ 50071983 (-)
G718945 NA non-coding upstream 159205 50525475 ~ 50525714 (-)
G718986 NA non-coding upstream 205038 50571308 ~ 50571740 (-)
G718931 NA non-coding upstream 321970 50688240 ~ 50714007 (-)
G719056 NA non-coding upstream 348312 50714582 ~ 50714934 (-)
G718489 NA other downstream 500035 49785674 ~ 49837696 (-)
G716488 NA other downstream 1548769 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1555216 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1576568 48759912 ~ 48761163 (-)
G719151 NA other upstream 570658 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 886085 51252355 ~ 51259061 (-)
G721275 NA other upstream 2394769 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 3096912 53462034 ~ 53478913 (-)
G722459 NA other upstream 3131878 53495804 ~ 53499730 (-)

Expression

LOC110530016(LOC106568717) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC110530016(LOC106568717) Expression in each Bioproject

Bar chart with 18 bars.
LOC110530016(LOC106568717) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network