LOC110530020 (LOC106568719)


Basic Information

Item Value
gene id LOC110530020
gene name LOC106568719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50379771 ~ 50383088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612777.2
AGTACTGTGTCCTGTGGCGTCTTTTCAAGGGAAGAGGGGACTCAAGTGGCCGGCTGGCCAGCTCTACCAACAACACAAGACGGTCTAAAGACAGAAACAACCAACATCATGAAGCTAACGCTAACCTTTATGTTCGTACTTGTGGCTTCTTGGACAATGGTCCTATGCACCAAGGAGGAGCCCATGTCCGAAGACCCTCCCCTCCTTCAGGTTCCCGCCGTCGAGGCCCGCTCCCGTTTCGCCGCTCTGGACGACGTGCGTCTCCTGGCCAATGGTCTCCTCCAGCTTGGCCACAGCCTCAGGGACTTTGTCCACAAGACCAAGGGCCAGATCAATGACATCTTCCAGAAACTCAACATATTCGACCACTCCTTCAACCAGCTCTCTGTGCTGGCTAGCGAGatcaaggaggaagaggaggagttgaAGAAGACTACGGTAGTACTCAAGGCCAACAACGAGGAGATCAAGAGCCTATCGCTGGAGATCAACTCCAAGGTGGAGAGCATACTGCAGGAGCGTAGCCAGCTTCAAAGCAAGGTGGGCGGGCTGGAGGAGAAATTGAGCGGCCTGTCTCAGGGCCTGGTGCCCGCCGAGCAGCTGGCTGAGATCAGCACACTGAAGGATGTGATCCACACCCAGGAGAGAAGCATTGCTGAGCTGCTGAAGGCTGTGAGAGAGCAGAGCGACCAGCTTGTTCAGCAGAGGAGCAAGATCAAGACTCTGGAGGAGAAGCTCCCCTATAACCCTTCCATGCAAGAGACCATTGAGAAACCATCTGACAACTTCCAGTCTGTCACGCCGGACCTCACTGGGTATCTGACCAACACCTCTGCAAATGGCAGCTTCAACATGACAGATCTCCCATCAGACTGCTGTGAGCTATTTACCAGGGGCGAGAGAGCCAGTGGAATGTACACCATCAAGCCTAACCAATCCGAGCCCTTCATGGCCTACTGTGACATGGATCAAGATGGAGGGGCTACTATAATCCAAAGAAGGAAGGATGGGTCCGTGAATTTCGATCAGAATTGGGAGAAGTTTGAAAACGGATTTGGAGACTTTCAAGGGGAGTTCTGGCTGGGTCTGAAGAAGGTCCACTCCCTGGCTAGTCAAGGTGACTCTTTCCTGAACATCCAACTGGAGGACTGGAAACAGGGCAAACGCTTCATCGAATACAACTTCTCTCTGGATGGACCAGAGGCCCACTATACTATCCACCTCTCACAGGCATCCGGAAATCTGCCTGATGCAATGAGCAACCATACCGGTATGAAGTTCTCCACTAAGGACCGGGACAATGACAACCTTGAAGACTCACACTGCGCTTACACCTACACAGGTGGCTGGTGGTTCAACGCTTGTGGAGACACCAATCTGAACGGGAGATACATCCACGTGAGATCCAAGGGACGTTCAGAGTGTAGGAGGGGAATCCACTGGAAGCCCACCAGAGGGGCCTCCTACTACCTCCGATCCACCCAGATCTCCATTCgctccacccccaccactacagccacCTCAGAAACAGGCAACTTCCTCTGAGAACAAACACAAGACGTATGGACAGAAATAAGACATTGACCAAGCTTTGGCAAAGATACATGTGACTGACAGTCCCTGACAACAAGGCCTTAAGGAGATTTAGGAGGCCAGTTTAGTCAGGTCTCTTCTGTCGACTGCACAGTGGGACCACGTAGATTAAATAGACTCTAAGCCACTGTTTATCTTATAGCTAATCTAAAAAGAACTTGCTTCTCCTCTTCAGCATTAAAGGCTTTGGGACACAAGGAACCAAATGAATTGTCAAACATTTTTATACTCCGTTTAGCGTTCTAATTTTTGGGCTAAATTGATTGATAACATCCTCCTATTGTTACATGCATTTGTGGAATCCTATAGAGTTCTTGTTTAAGCATTGGAAACTATGAATTAATGGTGGGCGGTATTCATACCTGTGATCTGCGCACAAACCTCGTAAATATGCAAAACGTACATAATTCTTTCATGTCAAATTTGTGTTAAACGTGCAGATCTTAAGTTTGAATATAACCAGGTATGAAGTTTAGAGGAATTGGATGGACAGCACACAGGCATCCACCTTAATGACAGCAGTTATCACCAGGATCTTAGTCACATTGACTCTCAGCACATctgtactgtaaatactgtattttTGTTACTTGTCACATTTTTACAGTTCTGGAAAATAAATCATATTTATGACA

Function

NR:

description
angiopoietin-related protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612777.2 True 2228 mRNA 0.48 7 50379771 50383088

Neighbor

gene id symbol gene type direction distance location
LOC110530017 LOC106568715 coding upstream 43446 50146364 ~ 50336325 (+)
LOC110530014 LOC107558802 coding upstream 307780 50043342 ~ 50071991 (+)
LOC110530925 LOC106568799 coding upstream 341287 50015178 ~ 50038484 (+)
LOC110529118 LOC106598598 coding upstream 371957 50004981 ~ 50007814 (+)
LOC118965615 NA coding upstream 525336 49853027 ~ 49854435 (+)
LOC110530019 LOC106568718 coding downstream 1208 50384296 ~ 50397007 (+)
LOC110530022 LOC106568721 coding downstream 51847 50434935 ~ 50441957 (+)
LOC110530023 LOC106568722 coding downstream 60616 50443704 ~ 50578861 (+)
LOC110530024 LOC106568723 coding downstream 224313 50607401 ~ 50641183 (+)
mier1b LOC100380719 coding downstream 265630 50648718 ~ 50665624 (+)
G717970 NA non-coding upstream 100800 50278709 ~ 50278971 (+)
G717955 NA non-coding upstream 136737 50242819 ~ 50243034 (+)
G717954 NA non-coding upstream 137746 50241653 ~ 50242025 (+)
G717953 LOC100136012 non-coding upstream 141290 50238255 ~ 50238481 (+)
G717952 NA non-coding upstream 141562 50237956 ~ 50238209 (+)
G718044 NA non-coding downstream 31612 50414700 ~ 50416134 (+)
G718053 LOC106568720 non-coding downstream 47834 50430922 ~ 50434684 (+)
G718060 LOC106568726 non-coding downstream 290775 50673863 ~ 50685225 (+)
G718164 LOC106568727 non-coding downstream 308073 50691161 ~ 50692973 (+)
G718200 NA non-coding downstream 352294 50735382 ~ 50735600 (+)
G716993 LOC100136012 other upstream 832686 49546212 ~ 49547085 (+)
G716862 NA other upstream 1045999 49332841 ~ 49333772 (+)
G716133 NA other upstream 1619031 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1835607 48537743 ~ 48544164 (+)
G721689 LOC106583873 other downstream 2994144 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3287308 53670348 ~ 53674103 (+)
rps28 NA other downstream 3543129 53926018 ~ 53927959 (+)

Expression


Co-expression Network