LOC110530019 (LOC106568718)


Basic Information

Item Value
gene id LOC110530019
gene name LOC106568718
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50384296 ~ 50397007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985562.1
GTGGCTAAGACTTTTCCCTCCCGTTACGCCTGTACAACCTTTTTAACTGTCAGGGGATCACATCTACACAACAGGTTACCCCTCTTtccttgttttttgttgttttgtttttgtaccaCATTGAAACAATGGATGATAGTCCACTGCAAGTTCTGACTCTACCCACAGCCCCTTACCCAGACCAGAGACCAGGTACTAGTGGTCTGAGAAAGAAGGTGTTTGTCTTCCAGTCCAAAAGGAACTACCTTCAGAACTTCGTCCAGAGTATATATTCCTCCATCGATCTGCTAGACCGCCAGGGGTCCACAATGGTAGTTGGGGGAGACGGACGCTACTTCAATCAAACAGCCATCGAGGTCATTGTTCAGATGGCAGCTGCGAACGGGGTTGGACGGCTCGTGATTGGTCATCATGGGATCATGTCCACGCCAGCGGTTTCCTGTGTGATCAGAAAGTACAAGGCCATCGGCGGTATCGTCCTCACAGCCAGTCACAACCCTGGGGGACGCGAAGGAGACTTTGGCATCAAGTTCAACACTGCTAATGGAGGCCCAGCCCAGGATGCGGTCACCAACAGAATCTTCCAGATCAGCAGAACCATAGAGGAGTATGCCATCTGCCCAGAGATCCGGGTAGACTTGGCTACCCTGAGCAAACAGACGTTTGATCTGGAGAACAAGTTCAAACCCTTCACAGTGGAGATAGTGGACTCGGTAGAGTCTTACGCCAACATGCTAAGGAACATCTTTGACTTTGCTGCACTGAAGGAGCTGCTGTCTGGGGAGAACCACATCAAGATCCAGCTAGATGCCATGCATGGAGTGATGGGTCCCTATGTGAAGAGGATACTGTGTGAGGAGCTAGGCTCCCCTGCGAACTCTGCCATTAACTGTGTCCCCCTGCAAGACTTTGGGGGCCAGCACCCTGATCCCAACCTCACCTATGCAGCCGACCTGGTTGAGaccatgaggggtggccagtacgATTTTGGAGCTGCCTTTGATGGTGACGGTGACCGTAGCATGATTCTGGGTAAGCATGGCTTTTTCGTCAACCCCTCGGACTCGGTGGCTGTCATCGCTGCCAATGTCTTCAGCATCCCCTACTTTCAGCACACAGGGGTGAGAGGCTATGCCCGCAGCATGCCCACCAGCGCTGCACTGGACAATGTGGCCAGGGCAACAAAGATTGAACTTTACGAGACCCCCACGGGGTGGAAGTTCTTTGGCAACCTGATGGACGCAGGCAAGCTGTCACTGTGCGGAGAAGAGAGTTTCGGCACAGGCGCTGACCATATCCGTGAGAAGGATGGACTTTGGGCCGTGCTGGCATGGCTGTCAATCCTGGCAACGAGGAAGCAGAGTGTGGAGGATATCATAAAGGACCACTGGCAGACGTTTGGCAGGAACTTCTTTACCAAGTATGACTATGAGGAAGTCGACCTGGATGCAGCCATTCAGATGATGGAGGATCTGGAGCTGAGGATACTGGGGAAGGCCTTTATGGGCCAGCGGTTCGCTGTGGGGGAGAAGCTCTACCAGGTGGAGAAGGCAGACAACTTTGAATACACGGATCCCGTAGACGGGCGCATCTGCAGAAACCAAGTGAGGAAGGCCTGAGGATAATATTCACAGATGGCTCCCGGATCATCTACAGGCTCAGTGGGACAGGGAGTATGGGGGCAACAGTTCGGGTCTACATCGACAGCTATGAGAAAGACCCTGACAAGATCTTCCGAGACCCA
>XM_021612776.2
GGCTAAGACTTTTCCCTCCCGTTACGCCTGTACAACCTTTTTAACTGTCAGGGGATCACATCTACACAACAGGTTACCCCTCTTtccttgttttttgttgttttgtttttgtaccaCATTGAAACAATGGATGATAGTCCACTGCAAGTTCTGACTCTACCCACAGCCCCTTACCCAGACCAGAGACCAGGTACTAGTGGTCTGAGAAAGAAGGTGTTTGTCTTCCAGTCCAAAAGGAACTACCTTCAGAACTTCGTCCAGAGTATATATTCCTCCATCGATCTGCTAGACCGCCAGGGGTCCACAATGGTAGTTGGGGGAGACGGACGCTACTTCAATCAAACAGCCATCGAGGTCATTGTTCAGATGGCAGCTGCGAACGGGGTTGGACGGCTCGTGATTGGTCATCATGGGATCATGTCCACGCCAGCGGTTTCCTGTGTGATCAGAAAGTACAAGGCCATCGGCGGTATCGTCCTCACAGCCAGTCACAACCCTGGGGGACGCGAAGGAGACTTTGGCATCAAGTTCAACACTGCTAATGGAGGCCCAGCCCAGGATGCGGTCACCAACAGAATCTTCCAGATCAGCAGAACCATAGAGGAGTATGCCATCTGCCCAGAGATCCGGGTAGACTTGGCTACCCTGAGCAAACAGACGTTTGATCTGGAGAACAAGTTCAAACCCTTCACAGTGGAGATAGTGGACTCGGTAGAGTCTTACGCCAACATGCTAAGGAACATCTTTGACTTTGCTGCACTGAAGGAGCTGCTGTCTGGGGAGAACCACATCAAGATCCAGCTAGATGCCATGCATGGAGTGATGGGTCCCTATGTGAAGAGGATACTGTGTGAGGAGCTAGGCTCCCCTGCGAACTCTGCCATTAACTGTGTCCCCCTGCAAGACTTTGGGGGCCAGCACCCTGATCCCAACCTCACCTATGCAGCCGACCTGGTTGAGaccatgaggggtggccagtacgATTTTGGAGCTGCCTTTGATGGTGACGGTGACCGTAGCATGATTCTGGGTAAGCATGGCTTTTTCGTCAACCCCTCGGACTCGGTGGCTGTCATCGCTGCCAATGTCTTCAGCATCCCCTACTTTCAGCACACAGGGGTGAGAGGCTATGCCCGCAGCATGCCCACCAGCGCTGCACTGGACAATGTGGCCAGGGCAACAAAGATTGAACTTTACGAGACCCCCACGGGGTGGAAGTTCTTTGGCAACCTGATGGACGCAGGCAAGCTGTCACTGTGCGGAGAAGAGAGTTTCGGCACAGGCGCTGACCATATCCGTGAGAAGGATGGACTTTGGGCCGTGCTGGCATGGCTGTCAATCCTGGCAACGAGGAAGCAGAGTGTGGAGGATATCATAAAGGACCACTGGCAGACGTTTGGCAGGAACTTCTTTACCAAGTATGACTATGAGGAAGTCGACCTGGATGCAGCCATTCAGATGATGGAGGATCTGGAGCTGAGGATACTGGGGAAGGCCTTTATGGGCCAGCGGTTCGCTGTGGGGGAGAAGCTCTACCAGGTGGAGAAGGCAGACAACTTTGAATACACGGATCCCGTAGACGGGCGCATCTGCAGAAACCAAGGCCTGAGGATAATATTCACAGATGGCTCCCGGATCATCTACAGGCTCAGTGGGACAGGGAGTATGGGGGCAACAGTTCGGGTCTACATCGACAGCTATGAGAAAGACCCTGACAAGATCTTCCGAGACCCACAGgtgaTGCTGGAACCCTTGGTTACCGTAGCCCTGAAGGTTTCACAGCTTCATGAGAGGACAGGCCGCAGTGGCCCATCAGTCATCACATGATCATCCATTACCACCCCTGCCCTTCCTAATAAAAGCCTCAAACTACACTGTCTTTTCCCCATCCTACCTTCCCTGAGATGGTCATTTTACCCTTCATCCAAAGCATCTTTGTGCGATTTTGTACTTTCAGATCAACCCCAACTATCACCACTCAGCTTCTTATTAATTGAGAAAGAGTGAACTGTAccaaaaataaaacattctcaACTTTGTATTTAGTTGTTGGTGTTATTAGTGAAATCCCCATTGATCAGGGCTagccaaccttgttcctggagagctgctGTCCTGTAGATATTCACtccaaaaacctacaggagggtatctcacCGGGAACAGAGAGTTGGAGAGTCCTGCCATAGATGGTATAGGTCTACATACAGTAGCATGGGAAATTCCCCAATAAATCGGTAATGAGAAGGCCTTGGTCTTTATAAATCTTGCATCATCAAAATGAAAGAAACATTCCATATCGAAACTATTTCAATACAGAAATATTGATATGCCTGTTCTGTCTTTAAAGTGGGATTTAAGATTAAGCGCTTTCTGTAATACTATCTAGAACTACCATACTATAAATGGGTCGTTTTAGGTACACTACATCAAGTGAAGTTGAGAAGTATGTAGCCTAGGCTAGGACTATTTGTCGGCTGTCTGGCTCCATCCAAAGCAGTTCTTCCCACCAAATTGGCTGACAACAGCTTCGAAACATATCAACTTGCTCCATTGTTCTCCTGTAAAGAATGTGTTCAAGTGTGCCTAGCTCCAATGCAATATTGTACCATGGAAAGCATGCATTTGTTGTATGAAATATTGCCACATACTGCTGTCAAGTTGTGTAGCAATGAAAACAAAACTGCAGACAGCAGATCTAACAGTGAGTTTTTCTAACTTTGTTTACAGCTATTTTACACTTTTCTGTACCCATCATATCTTCAGATATTAGGTCATCCTACCTGTGTGTGCTTGTAAAAGCGTTTTCACTGGAACAAGTGTGTATTCATGTCACCTTCAAATAACCTGTGAGCACTGAAAAGTCATTGTTTTTTATGCAGGTGGAGGCAAAGCCAGTGAGTGACAACTCTGAGTGAATGGGAGGCTAAAGTGGAGGGACTGAAGGACACCTTGTCGGAAGGTGTGATATGGCATGGAGTGTTCAGagcatcccccccaaaaaagtataTTGTTGATGATGATCAgctactgatgatgatgattatatgGTGTCTACACTTGGTGTCTATATATGTGTCTACACTTTATTTTTTTTAGAATCTTTCTGTTCTATAAGGTGTCACAGTTTAGTGAGGCTTATAGCTCTGTCCCCTCAACTGTCGAGTTCAGCATCGTCCCCTTCCACACCAATGGTGAATTGTCAGCAATACTTCATCTATTGCCATGATAGTGTCATAAAAAGGAAACTGTTTCCCTATCTGTTTTGGCTGAAGTGGACAAGGACGCAGGTAGGACCATGTTTCCCCTGCCTGGGCAGCGAGTGGAACCCCAGCATCTCAATTAGCAGCATTCTACTCAGCGTAATACAGTActgcacatttttttaaatataataaaGTCCCCAGAGAGCTAGGGTCGAACATTTGCAGGGAAATATTCATGTCCTTACAGTGTTTTTGTATGCGTATTTAATCAATAGAACTGCAGTTAGTTACATTTTGCTCGTGCAATTCCACTAGTGTTTGTCTTGCAAATCACTTCTGGAGCCTTGAGTCAGCCTACGCAGATTTGTCTGTCCCTAATAACGCGTAGAAGTGTTTATTAACAGCGGTTAGTATATAAAAAGCAGTACTATTTACAATGTTCATAGACTTATAGTATCCACTCTGATGTTGGTCTCCTCTCCTATGTCCCCTCTCCTAACCATGCTGTCCAACCCAGTCCTGGAGGGAGAAGTGAACCCAGAGGCTGCTGACATGCTCTGATCCAGCCCCTCCACCTATCAGTATTTTATAAATGCTTATTTATTGGTTAGAGAggaacagagcctggactctgcgacagagcctggactcgaaccaggttctatagtggcacagctagcactgtgatgcagtgccttaaaccactgcaccactcaggaggccctggGGAGCTCATTAAAGCATTACAGTACGGTGCTCCCCTCTCATCGGGAAGAGCAGGAAACCCCTAAAAGTACAATTGTTTCATTCTAAACAGAACCATTACTTTTCTTGTTCTGTTCCGCTGTTCCGACCAGAGTTTGAGAGCTagaccagagctagctagctagctaacaaccttgTGTGAGCAGAGCGCCACCAAAATAAAAACACGTCTTACCTTTTTATTGATAATAAAGCCAATGTGAAACGTGAaaactatagtatccttaactagcttTGAAAAAAGTGAATCTATTCTTCTCTTGTTAAAAAtctctctccctaatttctgaatcatGCTTGTAACGTCTGTAGCTACAGTAGACTCTGCatcggagggaggggaggggcaggtagcctataCACACACTGGCGAAGATTTTCAGCCGGCAGACAGGCAGATATTGGAATACgttaacattataacattattaacCCGTTCCCATGCTTGTAAAATAATGGTTCAGTTCCGAAACAGTATAGATCAATTTCGTTCTAGGTTCTGGTTCTGTTCCTATTAAAGTTtctggttctgttccctgaacctgTCAAGTACTGTCATAGAGCCCAATGCCTAAGTGGAGACTCATGTAGACCACATCCCCCTGCTCCAGCACATAATTATGTTGATGGTCAGTGTGTACAATATTATGCACAACTTTTTGGTCATTTGTGGTACAGGTTTACTCCCAGGCTTACTCGTTGCAAATTGCGGTATCCCCAGGCAGTGAATCTGAAGTAGTAGACTCTTCACACTGGTGCTTCTAAGTGACCTGTAATTTGGTTGTAGGCCGTGCCAATGTTGGTGATGACTCTCTTGTAGTAGATCAGTTGGGTTTCAGTAATGAATGGTCCTACAATTCCTGAATCAATCAAACCAACAGAGAAGGCCACCTTTGGTCTGTCTTTTCTCCCTCTTCGGCTCCTCCAcctgttgtaactttaatgtgttacagagttaatgtttaagtttattcattgagctgtatctaaatatatttctttacagttatttgcctatgtaattgtattgggttgtgttgaattacgctttttgactgcaagttccagaatgccttgcgagaggaatgagagagataaCACGCCAATTATGTGCAGGTGTTGATTGTGGTTGACTTTCCgatagcatcttacctgcattgctctgtaccaaaacaaagttgttaaatgtaacgtgaacAAGTATTATTACTAAAAAAGAAGCTTTCGTATCAAA
>TU815871
CCTCACAGCCAGTCACAACCCTGGGGGACGCGAAGGAGACTTTGGCATCAAGTTCAACACTGCTAATGGAGGCCCAGCCCAGGATGCGGTCACCAACAGAATCTTCCAGATCAGCAGAACCATAGAGGAGTATGCCATCTGCCCAGAGATCCGGGTAGACTTGGCTACCCTGAGCAAACAGACGTTTGATCTGGAGAACAAGTTCAAACCCTTCACAGTGGAGATAGTGGACTCGGTAGAGTCTTACGCCAACATGCTAAGGAACATCTTTGACTTTGCTGCACTGAAGGAGCTGCTGTCTGGGGAGAACCACATCAAGATCCAGCTAGATGCCATGCATGGAGTGATGGGTCCCTATGTGAAGAGGATACTGTGTGAGGAGCTAGGCTCCCCTGCGAACTCTGCCATTAACTGTGTCCCCCTGCAAGACTTTGGGGGCCAGCACCCTGATCCCAACCTCACCTATGCAGCCGACCTGGTTGAGaccatgaggggtggccagtacgATTTTGGAGCTGCCTTTGATGGTGACGGTGTGCGTGCTAACTCAAACAATAATTTTACTGTCTATATAATAATGATCACCATTTTAAGTAATCATCTTTAATTTGTGAATTTCTCCTTTATATAGAAAAAAAACTAGAACCCCCCCCCAAGAAATATTAAAGTGCTTTAACAGTCAATGCTGACACAACAACTGAAAATCTACTGAGAAACGTTTTATTATTTTTCATCCAAGACAATTAAGGAAATGTTAAAATAGTACCCATCAAGCATCCCAGACAGACTGAAGACTTCTATCACAACTTTAGGGTTAGATGCTTTGAATTGTATTTAGATAAATCACCATGCTGCTAAACcctctcttttttattttttacttaacctttatttaactaggcaagccagttaagaacacattcttatttacaatgacgacctctCTCTTGTcgcctgacctctaacctctgtttGGTTTTCCAGGACCGTAGCATGATTCTGGGTAAGCATGGCTTTTTCGTCAACCCCTCGGACTCGGTGGCTGTCATCGCTGCCAATGTCTTCAGCATCCCCTACTTTCAGCACACAGGGGTGAGAGGCTATGCCCGCAGCATGCCCACCAGCGCTGCACTGGACAATGTGGCCAGGGCAACAAAGATTGAACTTTACGAGACCCCCACGGGGTGGAAGTTCTTTGGCAACCTGATGGACGCAGGCAAGCTGTCACTGTGCGGAGAAGAGAGTTTCGGCACAGGTATCTCATCAGCGCTGACCATATCCGTGAGAAGGATGGACTTTGGGCCGTGCTGGCATGGCTGTCAATCCTGGCAACGAGGAAGCAGAGTGTGGAGGATATCATAAAGGACCACTGGCAGACGTTTGGCAGGAACTTCTTTACCAAGTATGACTATGAGGAAGTCGACCTGGATGCAGCCATTCAGATGATGGAGGATCTGGAGCTGAGGATACTGGGGAAGGCCTTTATGGGCCAGCGGTTCGCTGTGGGGGAGAAGCTCTACCAGGTGGAGAAGGCAGACAACTTTGAATACACGGATCCCGTAGACGGGCGCATCTGCAGAAACCAAGGCCTGAGGATAATATTCACAGATGGCTCCCGGATCATCTACAGGCTCAGTGGGACAGGGAGTATGGGGGCAACAGTTCGGGTCTACATCGACAGCTATGAGAAAGACCCTGACAAGATCTTCCGAGACCCACAGgtgaTGCTGGAACCCTTGGTTACCGTAGCCCTGAAGGTTTCACAGCTTCATGAGAGGACAGGCCGCAGTGGCCCATCAGTCATCACATGATCATCCATTACCACCCCTGCCCTTCCTAATAAAAGCCTCAAACTACACTGTCTTTTCCCCATCCTACCTTCCCTGAGATGGTCATTTTACCCTTCATCCAAAGCATCTTTGTGCGATTTTGTACTTTCAGATCAACCCCAACTATCACCACTCAGCTTCTTATTAATTGAGAAAGAGTGAACTGTAccaaaaataaaacattctcaA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985562.1 False 1744 mRNA 0.53 10 50384296 50393405
XM_021612776.2 False 5205 mRNA 0.45 11 50384298 50397007
TU815871 True 2018 TUCP 0.48 9 50385546 50393836

Neighbor

gene id symbol gene type direction distance location
LOC110530020 LOC106568719 coding upstream 1208 50379771 ~ 50383088 (+)
LOC110530017 LOC106568715 coding upstream 47971 50146364 ~ 50336325 (+)
LOC110530014 LOC107558802 coding upstream 312305 50043342 ~ 50071991 (+)
LOC110530925 LOC106568799 coding upstream 345812 50015178 ~ 50038484 (+)
LOC110529118 LOC106598598 coding upstream 376482 50004981 ~ 50007814 (+)
LOC110530022 LOC106568721 coding downstream 37928 50434935 ~ 50441957 (+)
LOC110530023 LOC106568722 coding downstream 46697 50443704 ~ 50578861 (+)
LOC110530024 LOC106568723 coding downstream 210394 50607401 ~ 50641183 (+)
mier1b LOC100380719 coding downstream 251711 50648718 ~ 50665624 (+)
LOC110530037 LOC106568733 coding downstream 536525 50933532 ~ 50939589 (+)
G717970 NA non-coding upstream 105325 50278709 ~ 50278971 (+)
G717955 NA non-coding upstream 141262 50242819 ~ 50243034 (+)
G717954 NA non-coding upstream 142271 50241653 ~ 50242025 (+)
G717953 LOC100136012 non-coding upstream 145815 50238255 ~ 50238481 (+)
G717952 NA non-coding upstream 146087 50237956 ~ 50238209 (+)
G718044 NA non-coding downstream 17693 50414700 ~ 50416134 (+)
G718053 LOC106568720 non-coding downstream 33915 50430922 ~ 50434684 (+)
G718060 LOC106568726 non-coding downstream 276856 50673863 ~ 50685225 (+)
G718164 LOC106568727 non-coding downstream 294154 50691161 ~ 50692973 (+)
G718200 NA non-coding downstream 338375 50735382 ~ 50735600 (+)
LOC118965615 NA other upstream 530104 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 837211 49546212 ~ 49547085 (+)
G716862 NA other upstream 1050524 49332841 ~ 49333772 (+)
G716133 NA other upstream 1623556 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1840132 48537743 ~ 48544164 (+)
G721689 LOC106583873 other downstream 2980225 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3273389 53670348 ~ 53674103 (+)
rps28 NA other downstream 3529210 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 4227167 54557953 ~ 54670115 (+)

Expression


Co-expression Network