LOC110530022 (LOC106568721)


Basic Information

Item Value
gene id LOC110530022
gene name LOC106568721
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50434935 ~ 50441957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612781.2
AACCGTTCCGCAAAGTAGAAAGCGTTCAAGCGAAATGAGCGCACCCCAGAATTAACCATTGTTGGCAAGCAATAATTATTTCAGAACAACTTTGACTGAATTATTATCCTTACACTTTCAAAAAtactagtcgaataagacatgggagagatttATTAAATCCGCTACAAAAATCAGTAGCGGAATGTAGGCTAAACAGACAAAGGAGCAAAGAGCAGAAATCTGAAGtagcaagcaagtcgcagcaatgaagaaCCCGAAGGGGGGAGAATTCTGGCTGGGggagattttcggcacaacaccggAAAGCCATGCTTTGTTAGTGAGTGGCCACAAAGCTAGCTACAATGAAGCATGTGGGGCATcgtaggtggctcgtttcagctagttGTATCTTGTTCTTCATAACTTgtcttgttttgactgatttcatgtcaatgctagctaactaaccaacactgtaacgatgtatttgagagacaagtgtTCATTGTGcacatttattttttgttttcaataaacattagGAGACGAGATATAGTTTACACGTTGTCAATAATATAAGCCTGAATTGACCCATTGACCCATTGTTGCGCACGCGTCGGTATTAGAAACAGCTCCTTTAGAAAGTCAGTTTGACGCAAATAAAAAGTTCAAAGGAGGAAATAGGAAGTCAGTCTCGAATGTCAACACACCAAACAAAGCACAAAGAAGAGGAACTGACAGAAAATTTAAGACGTTTAAGACAATGGCGGGTATTAAAGCACTGGTTGGGTTGTCCTTCAGTGGAGCCATTGGCTTGACATTCCTCCTGTTGAGCTGTGCCTTGGAGCAATATGGGGTGTACTGGCCCCTCTTCGTCCTTTTCTTCTATGTACTCGCTCCTATCCCCACCTTTATATCCAGAAGGCTCAGTGATGACAGTGATGTGGCCAGCAACGCATGCAGAGAGCTGGCATACTTCTTGACTACGGGAATTGTGGTATCTGCGTTCGCGCTTCCCATCATAATGGCCCGACGTGCAGTAATCCAGTTGGGGGCCTGTGGCCTGGTGATGGCCGGCAACGTTGTCATCTTCCTCACCATCCTTGGCTTCTTCCTGGGGTTTGGAGGGGGAGACGACTTCAgctaggagcagtatagaccgtCTGTGAATCTCTGGCCAAACAGAGCCACAAtcccaaatggacccctagaccctatgcacttgtggagatctgagaggatttgacAGGTGTAAGTAATATGGTAATAGCTCCAtcttgccctctgataggcttGCTAAGTGGAAGTTTCACCATATTGCTTATACCAGTCAAATCTTCTCTGATCTCCACAAGTGCATGCGGTGTAGGATCCAGGGGTCGATTTGAGATTAGGCAATGTGAAGACTGGATAGGTATAAGCATGTGGTGAAATATCACCAAGGGAAGagtggttgtttctggacaggaccCACCTCTCTACAATTGTAATTGTAAGTAAgtaagtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtaatacaAAACTATAGTCtgtgaacaagaaatttgtga
>XR_005052892.1
AACCGTTCCGCAAAGTAGAAAGCGTTCAAGCGAAATGAGCGCACCCCAGAATTAACCATTGTTGGCAAGCAATAATTATTTCAGAACAACTTTGACTGAATTATTATCCTTACACTTTCAAAAAtactagtcgaataagacatgggagagatttATTAAATCCGCTACAAAAATCAGTAGCGGAATGTAGGCTAAACAGACAAAGGAGCAAAGAGCAGAAATCTGAAGtagcaagcaagtcgcagcaatgaagaaCCCGAAGGGGGGAGAATTCTGGCTGGGggagattttcggcacaacaccggAAAGCCATGCTTTGTTAGTGAGTGGCCACAAAGCTAGCTACAATGAAGCATGTGGGGCATcgtaggtggctcgtttcagctagttGTATCTTGTTCTTCATAACTTgtcttgttttgactgatttcatgtcaatgctagctaactaaccaacactgtaacgatgtatttgagagacaagtgtTCATTGTGcacatttattttttgttttcaataaacattagGAGACGAGATATAGTTTACACGTTGTCAATAATATAAGCCTGAATTGACCCATTGACCCATTGTTGCGCACGCGTCGGTATTAGAAACAGCTCCTTTAGAAAGTCAGTTTGACGCAAATAAAAAGTTCAAAGGAGGAAATAGGAAGTCAGTCTCGAATGTCAACACACCAAACAAAGCACAAAGAAGAGGAACTGACAGAAAATTTAAGACGTTTAAGACAATGGCGGGTATTAAAGCACTGGTTGGGTTGTCCTTCAGTGGAGCCATTGGCTTGACATTCCTCCTGTTGAGCTGTGCCTTGGAGCAATATGGGGTGTACTGGCCCCTCTTCGTCCTTTTCTTCTATGTACTCGCTCCTATCCCCACCTTTATATCCAGAAGGCTCAGTGATGACAGTGATGTGGCCAGCAACGCATGCAGAGAGCTGGCATACTTCTTGACTACGGGAATTGTGGTATCTGCGTTCGCGCTTCCCATCATAATGGCCCGACGTGCAGTAATCCAGTTGGGGGCCTGTGGCCTGGTGATGGCCGGCAACGTTGTCATCTTCCTCACCATCCTTGGCTTCTTCCTGGGGTTTGGAGGGGGAGACGACTTCAgctaggagcagtatagaccgtCTGTGAATCTCTGGCCAAACAGAGCCACAAtcccaaatggacccctagaccctatgcacttgtggagatctgagaggatttgacAGGTGTAAGTAATATGGTAATAGCTCCAtcttgccctctgataggcttGCTAAGTGGAAGTTTCACCATATTGCTTATACCAGTCAAATCTTCTCTGATCTCCACAAGTGCATGCGGTGTAGGATCCAGGGGTCGATTTGAGATTAGGCAATGTGAAGACTGGATAGGTATAAGCATGTGGTGAAATATCACCAAGGGAAGagtggttgtttctggacaggaccCACCTCTCTACAATTGTAATTGTAAGTAAGGAGTATTCTGTTTGAAAATGTATCTTGCTTATTTTAAGTATAATCATTTCAAATGATCTACCCATACTCATTCTTGCAGTTGATTACATGTGTACTTTTGTTTATGGTTGTATGTGTTTATCCATATCTATTTTATATGATTTTTGGGTATGACTAGATAATCAGGTCAAGGTGTAGTCCACGTTTTTGTAGTTTGTCATTTTAAACATTTAGCTCCAAGACAAAAAAAAGCCTTATTCTAGGCCTTGATGCAAATGTTTACAGTAACACCAAACGACAGTTAAGAAAATAAGTTAGACACGAGTCACCCACCATGGTTTCTGACGAGTGTCTATGATTATTAAACGCATTATTAATTCCAATTGAGTAATTATGTTACACCCTTATTATTAAGTTAACAAATGTATTTTTGAATTACATGTGTTTAATATGTTTATCTTCACTGAGGACAGAAGCCAAAATGGGGTTTTGTGAACCATGGGCTACATTGGTACAGTAGATGAATGGTGAGTTTTCACACGGAATGTTAATACTATACATTTAGCTGTTTTTTGTTCTAACGAAGTGCCCACTTTTCTGTTCACCCAAAAGTGCCTAGTAAAATGTACTATTTTTACTGATTCAAAAAGTTTGAGTCACTTTTTACATTCTATATTGGTATAGCCTTCTGAGAGCCCATAGTGCATTCTAGAATTATGTTTTGAAATATTCCAATTAATAACCGAATGTAACAACACCACTTCATACTGATTTAATGTTGCTAGAAG
>XR_005052893.1
AACCGTTCCGCAAAGTAGAAAGCGTTCAAGCGAAATGAGCGCACCCCAGAATTAACCATTGTTGGCAAGCAATAATTATTTCAGAACAACTTTGACTGAATTATTATCCTTACACTTTCAAAAAtactagtcgaataagacatgggagagatttATTAAATCCGCTACAAAAATCAGTAGCGGAATGTAGGCTAAACAGACAAAGGAGCAAAGAGCAGAAATCTGAAGtagcaagcaagtcgcagcaatgaagaaCCCGAAGGGGGGAGAATTCTGGCTGGGggagattttcggcacaacaccggAAAGCCATGCTTTGTTAGTGAGTGGCCACAAAGCTAGCTACAATGAAGCATGTGGGGCATcgtaggtggctcgtttcagctagttGTATCTTGTTCTTCATAACTTgtcttgttttgactgatttcatgtcaatgctagctaactaaccaacactgtaacgatgtatttgagagacaagtgtTCATTGTGcacatttattttttgttttcaataaacattagGAGACGAGATATAGTTTACACGTTGTCAATAATATAAGCCTGAATTGACCCATTGACCCATTGTTGCGCACGCGTCGGTATTAGAAACAGCTCCTTTAGAAAGTCAGTTTGACGCAAATAAAAAGTTCAAAGGAGGAAATAGGAAGTCAGTCTCGAATGTCAACACACCAAACAAAGCACAAAGAAGAGGAACTGACAGAAAATTTAAGACGTTTAAGACAATGGCGGGTATTAAAGCACTGGTTGGGTTGTCCTTCAGTGGAGCCATTGGCTTGACATTCCTCCTGTTGAGCTGTGCCTTGGAGCAATATGGGGTGTACTGGCCCCTCTTCGTCCTTTTCTTCTATGTACTCGCTCCTATCCCCACCTTTATATCCAGAAGGCTCAGTGATGACAGTGATGTGGCCAGCAACGCATGCAGAGAGCTGGCATACTTCTTGACTACGGGAATTGTGGTATCTGCGTTCGCGCTTCCCATCATAATGGCCCGACGTGCAGTAATCCAGTTGGGGGCCTGTGGCCTGGTGATGGCCGGCAACGTTGTCATCTTCCTCACCATCCTTGGCTTCTTCCTGGGGTTTGGAGGGGGAGACGACTTCAgctaggagcagtatagaccgtCTGTGAATCTCTGGCCAAACAGAGCCACAAtcccaaatggacccctagaccctatgcacttgtggagatctgagaggatttgacAGGTGTAAGTAATATGGTAATAGCTCCAtcttgccctctgataggcttGCTAAGTGGAAGTTTCACCATATTGCTTATACCAGTCAAATCTTCTCTGATCTCCACAAGTGCATGCGGTGTAGGATCCAGGGGTCGATTTGAGATTAGGCAATGTGAAGACTGGATAGGTATAAGCATGTGGTGAAATATCACCAAGGGAAGagtggttgtttctggacaggaccCACCTCTCTACAATTGTAATTGGAGTATTCTGTTTGAAAATGTATCTTGCTTATTTTAAGTATAATCATTTCAAATGATCTACCCATACTCATTCTTGCAGTTGATTACATGTGTACTTTTGTTTATGGTTGTATGTGTTTATCCATATCTATTTTATATGATTTTTGGGTATGACTAGATAATCAGGTCAAGGTGTAGTCCACGTTTTTGTAGTTTGTCATTTTAAACATTTAGCTCCAAGACAAAAAAAAGCCTTATTCTAGGCCTTGATGCAAATGTTTACAGTAACACCAAACGACAGTTAAGAAAATAAGTTAGACACGAGTCACCCACCATGGTTTCTGACGAGTGTCTATGATTATTAAACGCATTATTAATTCCAATTGAGTAATTATGTTACACCCTTATTATTAAGTTAACAAATGTATTTTTGAATTACATGTGTTTAATATGTTTATCTTCACTGAGGACAGAAGCCAAAATGGGGTTTTGTGAACCATGGGCTACATTGGTACAGTAGATGAATGGTGAGTTTTCACACGGAATGTTAATACTATACATTTAGCTGTTTTTTGTTCTAACGAAGTGCCCACTTTTCTGTTCACCCAAAAGTGCCTAGTAAAATGTACTATTTTTACTGATTCAAAAAGTTTGAGTCACTTTTTACATTCTATATTGGTATAGCCTTCTGAGAGCCCATAGTGCATTCTAGAATTATGTTTTGAAATATTCCAATTAATAACCGAATGTAACAACACCACTTCATACTGATTTAATGTTGCTAGAAG

Function

NR:

description
leptin receptor related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612781.2 False 1568 mRNA 0.44 4 50434935 50439435
XR_005052892.1 False 2253 mRNA 0.40 5 50434935 50441957
XR_005052893.1 True 2245 mRNA 0.40 5 50434935 50441957

Neighbor

gene id symbol gene type direction distance location
LOC110530019 LOC106568718 coding upstream 37928 50384296 ~ 50397007 (+)
LOC110530020 LOC106568719 coding upstream 51847 50379771 ~ 50383088 (+)
LOC110530017 LOC106568715 coding upstream 98610 50146364 ~ 50336325 (+)
LOC110530014 LOC107558802 coding upstream 362944 50043342 ~ 50071991 (+)
LOC110530925 LOC106568799 coding upstream 396451 50015178 ~ 50038484 (+)
LOC110530023 LOC106568722 coding downstream 1747 50443704 ~ 50578861 (+)
LOC110530024 LOC106568723 coding downstream 165444 50607401 ~ 50641183 (+)
mier1b LOC100380719 coding downstream 206761 50648718 ~ 50665624 (+)
LOC110530037 LOC106568733 coding downstream 491575 50933532 ~ 50939589 (+)
LOC110530926 LOC106568801 coding downstream 501168 50943125 ~ 50944659 (+)
G718053 LOC106568720 non-coding upstream 251 50430922 ~ 50434684 (+)
G718044 NA non-coding upstream 18801 50414700 ~ 50416134 (+)
G717970 NA non-coding upstream 155964 50278709 ~ 50278971 (+)
G717955 NA non-coding upstream 191901 50242819 ~ 50243034 (+)
G717954 NA non-coding upstream 192910 50241653 ~ 50242025 (+)
G718060 LOC106568726 non-coding downstream 231906 50673863 ~ 50685225 (+)
G718164 LOC106568727 non-coding downstream 249204 50691161 ~ 50692973 (+)
G718200 NA non-coding downstream 293425 50735382 ~ 50735600 (+)
G718231 NA non-coding downstream 339362 50781319 ~ 50781583 (+)
G718218 NA non-coding downstream 358839 50800796 ~ 50801006 (+)
LOC118965615 NA other upstream 580743 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 887850 49546212 ~ 49547085 (+)
G716862 NA other upstream 1101163 49332841 ~ 49333772 (+)
G716133 NA other upstream 1674195 48760343 ~ 48760740 (+)
G721689 LOC106583873 other downstream 2935275 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3228439 53670348 ~ 53674103 (+)
rps28 NA other downstream 3484260 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 4182217 54557953 ~ 54670115 (+)

Expression


Co-expression Network