LOC110530027 (LOC106568725)


Basic Information

Item Value
gene id LOC110530027
gene name LOC106568725
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50665631 ~ 50674317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612797.2
CAACCCCTCTGACATCGTCATGACGTAGTATTTAGTGAATTATGGAGGAAGTTCGGAAACGTCAACATGTGCAAATTGAAGGGAAAACCTCGGATAAAAGCTCAGTATCCAAGAATGACAGTAAAGGGATGACGAGCGGGAGGTCAGCCGTGTTCCTGAAGCTTTTCGCTGCCGGATTTTACGGCCTGAGCTCGTTTTTAATCGTAGTTGTGAACAAAAGCGTCCTCACCAGTTACAGATTCCCCTCATCAACATGTGTTGGGATCGGTCAAATGCTGGCCACAGTACTAGTACTAGGAGCTGCAAAGTCAATAGGTGTCATCACGTTTCCAGGTTTGGACAGGAGCATCCCAAACAAGATGTTTCCCCTACCGCTTCTGTATGTTGGGAATCAGGTATCAGGACTTCTAGGAACCAAGCGACTCAATTTACCCATGTTTACAGTTTTAAGAAGATTCTCTATTTTGTTAACCATGTTGGCCGAGGGAATCCTACTGAAAAAGACATTCTCTGGGCCTATCAAGGCAACCGTGTTTGCCATGATCTTTGGAGCCTTTGTAGCTGCGAGCACGGATTTGGCCTTTGATCTTCAAGGCTATGTTTTCATAATGCTCAACAACGTTCTGACTGCAGCCAATGGGGCCTATGTGAAGCAGAAACTTGACTCCAAGGAGCTTGGCAAATATGGGCTGCTCTATTACAACGCTTTATTTATGATCATCCCTACCGTGGCATATGCACATTTTGCCGGGGATCTACAAATGGCATTGGAGTTTGAAGGGTGGTCGGACATGCTGTTTTTGTTCCAGTTTGTGCTTTCCTGTGTTATGGGCTTTGTTTTAATGTACTCCATTGTGCTTTGCACTCAGCATAACTCTGCATTGACCACCACCATAGTGGGCTGTATTAAAAATATTTTAGTCACTTATCTTGGTATGGTCTTTGGCGGAGACTATATTTTCACCTGGGTCAACTTCATTGGATTAAACATCAGCATTGCTGGCAGTCTGGTGTACTCCTACATCACATTCACTGATGAACAATCAAAAAAACCTTAATGGGGGTGCCACTGGAAGGTTGGAGCTGGACTTTGTAAGACGTGTGTCGAACATTTATTTGGCCACTATTTCAACATATTCTTAATCATCATCAGCAAGACTGAATCAGTGTTATTGAAGATTTGTGCCTAATCAAGTAAATGCAGTAACTATGGCTGGAATTCAATAAGACACACAGTACTGTAAATGTTTTTTCCTCTTGAGCCAACATCTATAGTGTTTAGCATGAATGCTTTCTCCACAAACCTCTGGGAAATTGCATTTTGTCGGTTCTGCAATGTGCCTCTGATTCTCGAACCTGtttattcaaaaatgtttttgtgAACCTAATTTCTAAGCAAAGCGCTTTTCCTTTTTTTACTATGTTCAACATTGTAAGGTCCAACATTTTAAACCTCATGTTGGTTACATGCATATTTGAAATATTGCTAGGTTTAATTTCCTGTCACACTGatgaaaaatgtatgaaaactcCCCCACATAATTCAAATCAATTTATCATTAAAGTGCCTATTTTGCAGTTAGGCCACAGTAAAATCATGAAATAACAGGT
>XM_036985586.1
CAACCCCTCTGACATCGTCATGACGTAGTATTTAGTGAATTATGGAGGAAGTTCGGAAACGTCAACATGTGCAAATTGAAGGGAAAACCTCGGATAAAAGCTCAGTATCCAAGAATGACAGTAAAGGGATGACGAGCGGGAGGTCAGCCGTGTTCCTGAAGCTTTTCGCTGCCGGATTTTACGGCCTGAGCTCGTTTTTAATCGTAGTTGTGAACAAAAGCGTCCTCACCAGTTACAGATTCCCCTCATCAACATGTGTTGGGATCGGTCAAATGCTGGCCACAGTACTAGTACTAGGAGCTGCAAAGTCAATAGGTGTCATCACGTTTCCAGGTTTGGACAGGAGCATCCCAAACAAGATGTTTCCCCTACCGCTTCTGTATGTTGGGAATCAGGTATCAGGACTTCTAGGAACCAAGCGACTCAATTTACCCATGTTTACAGTTTTAAGAAGATTCTCTATTTTGTTAACCATGTTGGCCGAGGGAATCCTACTGAAAAAGACATTCTCTGGGCCTATCAAGGCAACCGTGTTTGCCATGATCTTTGGAGCCTTTGTAGCTGCGAGCACGGATTTGGCCTTTGATCTTCAAGGCTATGTTTTCATAATGCTCAACAACGTTCTGACTGCAGCCAATGGGGCCTATGTGAAGCAGAAACTTGACTCCAAGCTTGGCAAATATGGGCTGCTCTATTACAACGCTTTATTTATGATCATCCCTACCGTGGCATATGCACATTTTGCCGGGGATCTACAAATGGCATTGGAGTTTGAAGGGTGGTCGGACATGCTGTTTTTGTTCCAGTTTGTGCTTTCCTGTGTTATGGGCTTTGTTTTAATGTACTCCATTGTGCTTTGCACTCAGCATAACTCTGCATTGACCACCACCATAGTGGGCTGTATTAAAAATATTTTAGTCACTTATCTTGGTATGGTCTTTGGCGGAGACTATATTTTCACCTGGGTCAACTTCATTGGATTAAACATCAGCATTGCTGGCAGTCTGGTGTACTCCTACATCACATTCACTGATGAACAATCAAAAAAACCTTAATGGGGGTGCCACTGGAAGGTTGGAGCTGGACTTTGTAAGACGTGTGTCGAACATTTATTTGGCCACTATTTCAACATATTCTTAATCATCATCAGCAAGACTGAATCAGTGTTATTGAAGATTTGTGCCTAATCAAGTAAATGCAGTAACTATGGCTGGAATTCAATAAGACACACAGTACTGTAAATGTTTTTTCCTCTTGAGCCAACATCTATAGTGTTTAGCATGAATGCTTTCTCCACAAACCTCTGGGAAATTGCATTTTGTCGGTTCTGCAATGTGCCTCTGATTCTCGAACCTGtttattcaaaaatgtttttgtgAACCTAATTTCTAAGCAAAGCGCTTTTCCTTTTTTTACTATGTTCAACATTGTAAGGTCCAACATTTTAAACCTCATGTTGGTTACATGCATATTTGAAATATTGCTAGGTTTAATTTCCTGTCACACTGatgaaaaatgtatgaaaactcCCCCACATAATTCAAATCAATTTATCATTAAAGTGCCTATTTTGCA

Function

NR:

description
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter-like

GO: NA

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612797.2 False 1611 mRNA 0.41 13 50665631 50674317
XM_036985586.1 True 1575 mRNA 0.41 13 50665664 50674317

Neighbor

gene id symbol gene type direction distance location
LOC110530021 LOC106568720 coding downstream 230843 50412980 ~ 50434788 (-)
LOC110530016 LOC106568717 coding downstream 299361 50337731 ~ 50366270 (-)
LOC110530015 LOC106568800 coding downstream 569702 50093497 ~ 50095929 (-)
LOC118965625 NA coding downstream 679426 49983389 ~ 49986205 (-)
LOC110530012 LOC106568711 coding downstream 695549 49964914 ~ 49970082 (-)
LOC110530028 LOC106568726 coding upstream 3855 50678172 ~ 50685258 (-)
hsd17b7 LOC106568727 coding upstream 16030 50690347 ~ 50710421 (-)
LOC110530033 LOC106568728 coding upstream 41811 50716128 ~ 50729934 (-)
LOC110530034 LOC106568730 coding upstream 66659 50740976 ~ 50767911 (-)
LOC110530035 LOC106568731 coding upstream 116903 50791220 ~ 50793594 (-)
G718986 NA non-coding downstream 93891 50571308 ~ 50571740 (-)
G718945 NA non-coding downstream 139917 50525475 ~ 50525714 (-)
G718834 NA non-coding downstream 212798 50357313 ~ 50452833 (-)
G718798 LOC106598425 non-coding downstream 282540 50297400 ~ 50383091 (-)
G718784 NA non-coding downstream 414575 50250751 ~ 50251056 (-)
G718931 NA non-coding upstream 13923 50688240 ~ 50714007 (-)
G719056 NA non-coding upstream 40265 50714582 ~ 50714934 (-)
G719068 NA non-coding upstream 59760 50734077 ~ 50734533 (-)
G719069 NA non-coding upstream 61942 50736259 ~ 50738316 (-)
LOC110530011 LOC106568709 other downstream 776379 49866272 ~ 49937001 (-)
G718489 NA other downstream 827935 49785674 ~ 49837696 (-)
G716488 NA other downstream 1876669 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1883116 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1904468 48759912 ~ 48761163 (-)
G719151 NA other upstream 262611 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 578038 51252355 ~ 51259061 (-)
G721275 NA other upstream 2086722 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2788865 53462034 ~ 53478913 (-)
G722459 NA other upstream 2823831 53495804 ~ 53499730 (-)

Expression


Co-expression Network