LOC110530028 (LOC106568726)


Basic Information

Item Value
gene id LOC110530028
gene name LOC106568726
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50678172 ~ 50685258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985589.1
CCATCTTGTGGCAGTATCTAGCGAATTGTTCGCAGCCAGCCTCGTAGAATCGGAGGTAAATCCCGCCGAAGGGGCGCCATCATGCCCGGACAACTGCAAGAAGGCTTCGGCTGCGTCGTAACGAATCGGTTTGACCAGCTATTGGACGATGAATCAGATCCGTTCGAGGTGTTAAAGGCGGCGGAGAACAAGAAGAAAGAGGCGGCCGCAGCTAGTATCACCAAGTCTGCAGCCCAAGCTGCCAAGCAGCCCAAGAAAGAGTCACAGAAGGACAGGAAGAATCCGCTCCTTGACAAAAAAGATGAAACTCAGGCTCCAGTACCTCCGAAGAAAGAAGTCATCTCTGGCCAGTGCTGATTGGCCACATCTAAAGCCTCCATGTGTTGTTGTGGTAGCAGTTATCAGGCGGGTGGGCCGAAGGCCGGACCAGCAGGGCCAGCCTGGCACCCAGGGCGGGCAGGGGGAGGGGCGGCCCACCGGCGACAGGAGGCCGGACAACAGGAGACCCCCACGCGAGCGCCGCTTCGACAAACCCCTTGAGGACAAGCCCGACGGTGGAGAAAGAGGAGAGTTCTCTGTAGACAAGCCTCTAGGAGACCGGCCCCCCAGAGGGCGCGGTGGCAGCCGTGCTGGGCGTGGTGGACGGGGACGGGGCATGGGCCGGGGCGACAGCTTCGACTCCCGCGGCAAACGGGACTTCGACAGACACAGTGGTGGCGACAAACCTCAGAAATCCGAGGAGAAGCGTGGCGGGAGTGGTGTTCACAACCGGGGAAACCCCAAGGACGAAACGAGTGTTGATGCCGAACAGACTACTGCCCCTGAGGAAACCCCTGAGGGAGTGGAACACACCCCTGCTGACTCTGAGAATAAGGAGAACGAAGTAGAGGAACCTAAGGAGGAGGGCCCCAAGGAGATGACCCTGGACGAATGGAAGGCCATGCAGGATAAGGAGCGTGCCAAGGTGGAGTTTAACATCCGCAAGCCCAACGAGGGAGCCGACAGCAAGTGGAACAAGGGCTACATGCTGCACAAGTCCAAGAGCGAAGATGTCAGCGACGAAAAGCCTAAAGATAGACCAGCTGTGATTGATACTCCGGAGATTGAAGAGTTGACCCCCTTGTTCAAGGGCAACCCTGATGAAATCGGCCCGGACCACCACTTCCGCAAGCCCGCCAACGACATCACAGCCCAGCTGGAGATCAACTTTGGAGACCTGGGCCGCCCTGGGCGCGGGCGCGGGGGAGCCCGTGGAGGAAGGGGAGGCCGCGGTGGAGGAGGCGGCCGATCCGACCGTCCGGTTCGCGCAGGGGGAGTTCGACCCGAAAAGCCAGGTGGAGTGTCTGTTCCCAATGTTGACGACCCAGAGGCCTTCCCAGCCCTGGCCTAAGACTTCAGCATCGCCACCAGCCCGCTCCGTCAGCGCCTCCGCCCCCCCTCCTATGAGGCTTGCATGCTTACAACTTCAAGTatatgagagaagaggagaaaaaaaGGAAATGATTTTAACGACGAAAAGAAGACAGTCATCCATACCATTCACAGCTGAGGACTGACATTTTAACCTGTTTTGAAAGGACTgataaaaagacaaaaaaaagaggAAAAATTACTTCTCTTGTTACACTGAAGCAAGTTATTGGTAGAAGTTTTGTATTTAGAGACAAGATAGCAGGGATGTTTTCatatattatttgtttttttcaGAGATTATGCGTATATACTTCATGGATATTTTTTTGTATTGCTGCTTGAATATATGCATTTCCAAGATTGaggttgaagtgtgtgtgttcctccttAGGCTTTGGCTGGCTTTCCTCATGACTTTACCTGAATATTTTGTGGTCATCTTAGacaagcttttattttgaaggggTGACTTTTAAGTCATGCATTACTCAGATGTTAAACTTTAAAATATGTTTTAGTACCTTTGTACTAAATCTATGAACTGTGTTTTTAAAAGTAGTGACTCCTTATAAGTGTAATGTTTCTGCTTGTTATGCAGTGAAAGTTGATGCCTCTGGTTTCCTTTTATTTTCCTATTGATAGCTTGGCTCTTATTTTTCTGGTGGACCAGTGGTTGGTGTGTTTTATCCCTGGTCCAGATGTTACTACCTGTGTCTTTAGGGCAGCCATGGCCCAAATGTGTATCTAGGCTGGTCCTTGTAGGTTGTACAGGCTATACTATTAGTAACCTTAAGACCACTATGCGAATATATTgtattttggtgtgtgtgtgtgtgtgtgtgtgattgggttGACTGTGAACAATAATTACTTAAACACTTGAAGTACTCCCCTGCCACGGACTTGACATTCTCCAGGAACTTGACCGCAAGTTCAAAAGCAGCTCGGTTTGGCCTGAAGTAGTTTTTATTTCTGAGAACATAGAAATGACTATCTAGGTAAGATTGTGGACATATCTTGCAATTAGAGTCTTTGATAAATGTAGTATTTGTAGTCTAATCTTTTAGAGTTTGCAAAGCACTTGGTTCCTATCAGCACCAGAACTCTGAAGTAAAgcccttttttttaaatttttttttattttattttccctcTTGTGATCATCTTTGCTGTTATTTTTGCATTTTGTTATAATTACTACAGCAGCACTACAGCATAATTTGTCTGAAAGAAATGTGCCGTTCAATGTGGAGCAATCGAGTGCTACAGAATGTATGACTGCTAATCGTGCTTGTAGTCATCTGTGTCTTGCATTTCCAGGCTAGGTTTTATTGTACCGAAGTAGGTATACTTCACACATTGGGTTTGGGGAAGGGGTACATTTTACTATTTTAAGTGACTGAAAGCTTTATATTCCAATGCTCTGGAAAGACTTGCTGGTAATACAGGGACACAGGTGACTGGAGCAAACCTTTTGTAGGACTGTTTGAGCCATTTGACGGTAGACTTTTCTGCAAACATCCCTGTTCTAATAAATTGCTTAGAGGTGTTAAATGTATTCTGCCCCTGGCAGTGAGTTGTGTGAGATCATTACTGTGACTTTTAAAAAGAacactcttaaaaaaaaaaaagtgtttttctatA
>XM_036985587.1
TCCCGGATATTCCTCGCACCGGAAGAGAAGGGGTACATTTCCCAGCCATCTTGTGGCAGTATCTAGCGAATTGTTCGCAGCCAGCCTCGTAGAATCGGAGGTAAATCCCGCCGAAGGGGCGCCATCATGCCCGGACAACTGCAAGAAGGCTTCGGCTGCGTCGTAACGAATCGGTTTGACCAGCTATTGGACGATGAATCAGATCCGTTCGAGGTGTTAAAGGCGGCGGAGAACAAGAAGAAAGAGGCGGCCGCAGCTAGTATCACCAAGTCTGCAGCCCAAGCTGCCAAGCAGCCCAAGAAAGAGTCACAGAAGGACAGGAAGAATCCGCTCCTTGACAAAAAAGATGAAACTCAGGCTCCAGTACCTCCGAAGAAAGAAGCAGTTATCAGGCGGGTGGGCCGAAGGCCGGACCAGCAGGGCCAGCCTGGCACCCAGGGCGGGCAGGGGGAGGGGCGGCCCACCGGCGACAGGAGGCCGGACAACAGGAGACCCCCACGCGAGCGCCGCTTCGACAAACCCCTTGAGGACAAGCCCGACGGTGGAGAAAGAGGAGAGTTCTCTGTAGACAAGCCTCTAGGAGACCGGCCCCCCAGAGGGCGCGGTGGCAGCCGTGCTGGGCGTGGTGGACGGGGACGGGGCATGGGCCGGGGCGACAGCTTCGACTCCCGCGGCAAACGGGACTTCGACAGACACAGTGGTGGCGACAAACCTCAGAAATCCGAGGAGAAGCGTGGCGGGAGTGGTGTTCACAACCGGGGAAACCCCAAGGACGAAACGAGTGTTGATGCCGAACAGACTACTGCCCCTGAGGAAACCCCTGAGGGAGTGGAACACACCCCTGCTGACTCTGAGAATAAGGAGAACGAAGTAGAGGAACCTAAGGAGGAGGGCCCCAAGGAGATGACCCTGGACGAATGGAAGGCCATGCAGGATAAGGAGCGTGCCAAGGTGGAGTTTAACATCCGCAAGCCCAACGAGGGAGCCGACAGCAAGTGGAACAAGGGCTACATGCTGCACAAGTCCAAGAGCGAAGATGTCAGCGACGAAAAGCCTAAAGATAGACCAGCTGTGATTGATACTCCGGAGATTGAAGAGTTGACCCCCTTGTTCAAGGGCAACCCTGATGAAATCGGCCCGGACCACCACTTCCGCAAGCCCGCCAACGACATCACAGCCCAGCTGGAGATCAACTTTGGAGACCTGGGCCGCCCTGGGCGCGGGCGCGGGGGAGCCCGTGGAGGAAGGGGAGGCCGCGGTGGAGGAGGCGGCCGATCCGACCGTCCGGTTCGCGCAGGGGGAGTTCGACCCGAAAAGCCAGGTGGAGTGTCTGTTCCCAATGTTGACGACCCAGAGGCCTTCCCAGCCCTGGCCTAAGACTTCAGCATCGCCACCAGCCCGCTCCGTCAGCGCCTCCGCCCCCCCTCCTATGAGGCTTGCATGCTTACAACTTCAAGTatatgagagaagaggagaaaaaaaGGAAATGATTTTAACGACGAAAAGAAGACAGTCATCCATACCATTCACAGCTGAGGACTGACATTTTAACCTGTTTTGAAAGGACTgataaaaagacaaaaaaaagaggAAAAATTACTTCTCTTGTTACACTGAAGCAAGTTATTGGTAGAAGTTTTGTATTTAGAGACAAGATAGCAGGGATGTTTTCatatattatttgtttttttcaGAGATTATGCGTATATACTTCATGGATATTTTTTTGTATTGCTGCTTGAATATATGCATTTCCAAGATTGaggttgaagtgtgtgtgttcctccttAGGCTTTGGCTGGCTTTCCTCATGACTTTACCTGAATATTTTGTGGTCATCTTAGacaagcttttattttgaaggggTGACTTTTAAGTCATGCATTACTCAGATGTTAAACTTTAAAATATGTTTTAGTACCTTTGTACTAAATCTATGAACTGTGTTTTTAAAAGTAGTGACTCCTTATAAGTGTAATGTTTCTGCTTGTTATGCAGTGAAAGTTGATGCCTCTGGTTTCCTTTTATTTTCCTATTGATAGCTTGGCTCTTATTTTTCTGGTGGACCAGTGGTTGGTGTGTTTTATCCCTGGTCCAGATGTTACTACCTGTGTCTTTAGGGCAGCCATGGCCCAAATGTGTATCTAGGCTGGTCCTTGTAGGTTGTACAGGCTATACTATTAGTAACCTTAAGACCACTATGCGAATATATTgtattttggtgtgtgtgtgtgtgtgtgtgtgattgggttGACTGTGAACAATAATTACTTAAACACTTGAAGTACTCCCCTGCCACGGACTTGACATTCTCCAGGAACTTGACCGCAAGTTCAAAAGCAGCTCGGTTTGGCCTGAAGTAGTTTTTATTTCTGAGAACATAGAAATGACTATCTAGGTAAGATTGTGGACATATCTTGCAATTAGAGTCTTTGATAAATGTAGTATTTGTAGTCTAATCTTTTAGAGTTTGCAAAGCACTTGGTTCCTATCAGCACCAGAACTCTGAAGTAAAgcccttttttttaaatttttttttattttattttccctcTTGTGATCATCTTTGCTGTTATTTTTGCATTTTGTTATAATTACTACAGCAGCACTACAGCATAATTTGTCTGAAAGAAATGTGCCGTTCAATGTGGAGCAATCGAGTGCTACAGAATGTATGACTGCTAATCGTGCTTGTAGTCATCTGTGTCTTGCATTTCCAGGCTAGGTTTTATTGTACCGAAGTAGGTATACTTCACACATTGGGTTTGGGGAAGGGGTACATTTTACTATTTTAAGTGACTGAAAGCTTTATATTCCAATGCTCTGGAAAGACTTGCTGGTAATACAGGGACACAGGTGACTGGAGCAAACCTTTTGTAGGACTGTTTGAGCCATTTGACGGTAGACTTTTCTGCAAACATCCCTGTTCTAATAAATTGCTTAGAGGTGTTAAATGTATTCTGCCCCTGGCAGTGAGTTGTGTGAGATCATTACTGTGACTTTTAAAAAGAacactcttaaaaaaaaaaaagtgtttttctatA
>XM_036985588.1
TGTCCCGGATATTCCTCGCACCGGAAGAGAAGGGGTACATTTCCCAGCCATCTTGTGGCAGTATCTAGCGAATTGTTCGCAGCCAGCCTCGTAGAATCGGAGGTAAATCCCGCCGAAGGGGCGCCATCATGCCCGGACAACTGCAAGAAGGCTTCGGCTGCGTCGTAACGAATCGGTTTGACCAGCTATTGGACGATGAATCAGATCCGTTCGAGGTGTTAAAGGCGGCGGAGAACAAGAAGAAAGAGGCGGCCGCAGCTAGTATCACCAAGTCTGCAGCCCAAGCTGCCAAGCAGCCCAAGAAAGAGTCACAGAAGGACAGGAAGAATCCGCTCCTTGACAAAAAAGATGAAACTCAGGCTCCAGTACCTCCGAAGAAAGAAGTTATCAGGCGGGTGGGCCGAAGGCCGGACCAGCAGGGCCAGCCTGGCACCCAGGGCGGGCAGGGGGAGGGGCGGCCCACCGGCGACAGGAGGCCGGACAACAGGAGACCCCCACGCGAGCGCCGCTTCGACAAACCCCTTGAGGACAAGCCCGACGGTGGAGAAAGAGGAGAGTTCTCTGTAGACAAGCCTCTAGGAGACCGGCCCCCCAGAGGGCGCGGTGGCAGCCGTGCTGGGCGTGGTGGACGGGGACGGGGCATGGGCCGGGGCGACAGCTTCGACTCCCGCGGCAAACGGGACTTCGACAGACACAGTGGTGGCGACAAACCTCAGAAATCCGAGGAGAAGCGTGGCGGGAGTGGTGTTCACAACCGGGGAAACCCCAAGGACGAAACGAGTGTTGATGCCGAACAGACTACTGCCCCTGAGGAAACCCCTGAGGGAGTGGAACACACCCCTGCTGACTCTGAGAATAAGGAGAACGAAGTAGAGGAACCTAAGGAGGAGGGCCCCAAGGAGATGACCCTGGACGAATGGAAGGCCATGCAGGATAAGGAGCGTGCCAAGGTGGAGTTTAACATCCGCAAGCCCAACGAGGGAGCCGACAGCAAGTGGAACAAGGGCTACATGCTGCACAAGTCCAAGAGCGAAGATGTCAGCGACGAAAAGCCTAAAGATAGACCAGCTGTGATTGATACTCCGGAGATTGAAGAGTTGACCCCCTTGTTCAAGGGCAACCCTGATGAAATCGGCCCGGACCACCACTTCCGCAAGCCCGCCAACGACATCACAGCCCAGCTGGAGATCAACTTTGGAGACCTGGGCCGCCCTGGGCGCGGGCGCGGGGGAGCCCGTGGAGGAAGGGGAGGCCGCGGTGGAGGAGGCGGCCGATCCGACCGTCCGGTTCGCGCAGGGGGAGTTCGACCCGAAAAGCCAGGTGGAGTGTCTGTTCCCAATGTTGACGACCCAGAGGCCTTCCCAGCCCTGGCCTAAGACTTCAGCATCGCCACCAGCCCGCTCCGTCAGCGCCTCCGCCCCCCCTCCTATGAGGCTTGCATGCTTACAACTTCAAGTatatgagagaagaggagaaaaaaaGGAAATGATTTTAACGACGAAAAGAAGACAGTCATCCATACCATTCACAGCTGAGGACTGACATTTTAACCTGTTTTGAAAGGACTgataaaaagacaaaaaaaagaggAAAAATTACTTCTCTTGTTACACTGAAGCAAGTTATTGGTAGAAGTTTTGTATTTAGAGACAAGATAGCAGGGATGTTTTCatatattatttgtttttttcaGAGATTATGCGTATATACTTCATGGATATTTTTTTGTATTGCTGCTTGAATATATGCATTTCCAAGATTGaggttgaagtgtgtgtgttcctccttAGGCTTTGGCTGGCTTTCCTCATGACTTTACCTGAATATTTTGTGGTCATCTTAGacaagcttttattttgaaggggTGACTTTTAAGTCATGCATTACTCAGATGTTAAACTTTAAAATATGTTTTAGTACCTTTGTACTAAATCTATGAACTGTGTTTTTAAAAGTAGTGACTCCTTATAAGTGTAATGTTTCTGCTTGTTATGCAGTGAAAGTTGATGCCTCTGGTTTCCTTTTATTTTCCTATTGATAGCTTGGCTCTTATTTTTCTGGTGGACCAGTGGTTGGTGTGTTTTATCCCTGGTCCAGATGTTACTACCTGTGTCTTTAGGGCAGCCATGGCCCAAATGTGTATCTAGGCTGGTCCTTGTAGGTTGTACAGGCTATACTATTAGTAACCTTAAGACCACTATGCGAATATATTgtattttggtgtgtgtgtgtgtgtgtgtgtgattgggttGACTGTGAACAATAATTACTTAAACACTTGAAGTACTCCCCTGCCACGGACTTGACATTCTCCAGGAACTTGACCGCAAGTTCAAAAGCAGCTCGGTTTGGCCTGAAGTAGTTTTTATTTCTGAGAACATAGAAATGACTATCTAGGTAAGATTGTGGACATATCTTGCAATTAGAGTCTTTGATAAATGTAGTATTTGTAGTCTAATCTTTTAGAGTTTGCAAAGCACTTGGTTCCTATCAGCACCAGAACTCTGAAGTAAAgcccttttttttaaatttttttttattttattttccctcTTGTGATCATCTTTGCTGTTATTTTTGCATTTTGTTATAATTACTACAGCAGCACTACAGCATAATTTGTCTGAAAGAAATGTGCCGTTCAATGTGGAGCAATCGAGTGCTACAGAATGTATGACTGCTAATCGTGCTTGTAGTCATCTGTGTCTTGCATTTCCAGGCTAGGTTTTATTGTACCGAAGTAGGTATACTTCACACATTGGGTTTGGGGAAGGGGTACATTTTACTATTTTAAGTGACTGAAAGCTTTATATTCCAATGCTCTGGAAAGACTTGCTGGTAATACAGGGACACAGGTGACTGGAGCAAACCTTTTGTAGGACTGTTTGAGCCATTTGACGGTAGACTTTTCTGCAAACATCCCTGTTCTAATAAATTGCTTAGAGGTGTTAAATGTATTCTGCCCCTGGCAGTGAGTTGTGTGAGATCATTACTGTGACTTTTAAAAAGAacactcttaaaaaaaaaaaagtgtttttctatA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985589.1 False 3057 mRNA 0.48 9 50678172 50685211
XM_036985587.1 False 3044 mRNA 0.48 9 50678172 50685256
XM_036985588.1 True 3043 mRNA 0.48 9 50678172 50685258

Neighbor

gene id symbol gene type direction distance location
LOC110530027 LOC106568725 coding downstream 3855 50665631 ~ 50674317 (-)
LOC110530021 LOC106568720 coding downstream 243384 50412980 ~ 50434788 (-)
LOC110530016 LOC106568717 coding downstream 311902 50337731 ~ 50366270 (-)
LOC110530015 LOC106568800 coding downstream 582243 50093497 ~ 50095929 (-)
LOC118965625 NA coding downstream 691967 49983389 ~ 49986205 (-)
hsd17b7 LOC106568727 coding upstream 5089 50690347 ~ 50710421 (-)
LOC110530033 LOC106568728 coding upstream 30870 50716128 ~ 50729934 (-)
LOC110530034 LOC106568730 coding upstream 55718 50740976 ~ 50767911 (-)
LOC110530035 LOC106568731 coding upstream 105962 50791220 ~ 50793594 (-)
LOC110530036 LOC106568732 coding upstream 149282 50834540 ~ 50848805 (-)
G718986 NA non-coding downstream 106432 50571308 ~ 50571740 (-)
G718945 NA non-coding downstream 152458 50525475 ~ 50525714 (-)
G718834 NA non-coding downstream 225339 50357313 ~ 50452833 (-)
G718798 LOC106598425 non-coding downstream 295081 50297400 ~ 50383091 (-)
G718784 NA non-coding downstream 427116 50250751 ~ 50251056 (-)
G718931 NA non-coding upstream 2982 50688240 ~ 50714007 (-)
G719056 NA non-coding upstream 29324 50714582 ~ 50714934 (-)
G719068 NA non-coding upstream 48819 50734077 ~ 50734533 (-)
G719069 NA non-coding upstream 51001 50736259 ~ 50738316 (-)
LOC110530011 LOC106568709 other downstream 788920 49866272 ~ 49937001 (-)
G718489 NA other downstream 840476 49785674 ~ 49837696 (-)
G716488 NA other downstream 1889210 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1895657 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1917009 48759912 ~ 48761163 (-)
G719151 NA other upstream 251670 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 567097 51252355 ~ 51259061 (-)
G721275 NA other upstream 2075781 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2777924 53462034 ~ 53478913 (-)
G722459 NA other upstream 2812890 53495804 ~ 53499730 (-)

Expression


Co-expression Network