XLOC_025801 (otop2)


Basic Information

Item Value
gene id XLOC_025801
gene name otop2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56905103 ~ 56918442 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050677
ATGTCGACAAAGGCAGATCTAGAAGCTATGGAGAACCAGATATCCACCATCCAAATCAGCTCCCATGGAGAGACGCCTAACCGGGGGTTCAAGCCTGTGGAGAAGGGCCGCAATTGGGGATGGCTCCTGTCTGGGTTCATCTCCTTAAACGCTCTGCTTTTGGGAATCGCCATCGTGAGTGGAAGTGTCTTCAACAAGGTCCAGATCACTTCCTCTCACCTTTTGATCTTCCTCATCTTGCTGGTCATCCTGTCCACTGTGTGGATGCTTTACTATAAAGTGCACACTTCCCGGGTGTACCGCGCAGTGCTCTACAAGGACAGTCATGCCGGACCTGTTTGGCTGAGAACTGGACTGGTTTTGTTTGGGATCTGCAGTGTAATCATGGACATCTTCAAGATTATTTTTTACGTGGGTCGAATGAACTGCGAATCGCCTGTCAAAATAGCCTTCCCCGTTGTGCAAGCGGTGTTTGTCATCGTCCAGACATACGTGCTCTGGATTCATGCTAAAGACTGTGTGCAAATCAAGCAAAACATCACACGTTGCGGCCTGATGTTGACTCTGTCCACCAACCTCATGGTGTGGATGATGGCTGTGACTGAGGAGTCGCTCCACCAGACTGTGGCTCCAGTCAAACCTCCGACCAACAACAACAtaggtagtgctgtcgcctcacagcaaggaggtcCCAGTGAATGTGAGTGTCTCCATAACATGTGCGACCTCTTTGAGAAGGCCTACTACTACCTGTACCCCTTCAACATCGAGTACAGCCTCTTCGCCTCCGCCATGACCTACGTGATGTGGAAGAACGTCGGCCGCAAGATGGACGACCACCACAGCCACAAGCTGCACTTCAGCCTGTGGGACGTCCTGGTGGGTCCGCTGGCGGGCCTGATCGTCCTGGTGGCGGGTCTGGCTACGTTTGTGGTGTACGAAGTGGACGTGTCTAAAGACGACCCTAAGAAGAAGGAGGAGGCTCTGATAATGCACTACATCATGAACATAGTGGCCGTCCTGCTCATGTCCAGCTCCGCTCTCGCCGGATGCATCCTCTTCCGCATGGACAAGCGAGAGCAGGTGTCGGGGAAGAACCCAACGCGGAGTCTGGATGTGGGACTCCTGGTGGGAGCGTCATTGGGACAGTTCCTCATCTGCTACTTCACTATAGTCGCTGTTTTGGCGTCTGGCGTCCAAGGCCACACGAATGGGCTCAACCTAGCATGTGCTATGCTAACGGTGATCGAGCTGTGCATTCAGAATGCCTTCCTCATCAAGGGCCTCCATCGGGAGCCCTTTAAGGAGACTGAGGTGGCCACCGTCTTCGCCAACGTCATGGCTGTGAAGGAGCGAGACCCAGAGAGACGGAGCAGCTCCATCGTGCCCGCACACACACTCCCCATCCCGCTGACTCTACTGCAGGGCCGGATGTCCTGGAAGAGGAGGGTCCTGAAGGAGATCTGCGcctttctgttgctctgcaatgtCACGCTCTGGATAATTCCAGCCTTCGGAGCGCGGCCTCAGTTCGACAACACCGTTGGGCCAGACGTTTATGAGTTCCAAACGTGGGCCGCCGTGGTAAACATCGGAATGCCATTTGGGATCTTCTACCGAATGCACTCGGTGGCGAGTCTGTTTGAGGTGTGCCTCGCTGCCTAA
>TCONS_00050678
ATGTCGACAAAGGCAGATCTAGAAGCTATGGAGAACCAGATATCCACCATCCAAATCAGCTCCCATGGAGAGACGCCTAACCGGGGGTTCAAGCCTGTGGAGAAGGGCCGCAATTGGGGATGGCTCCTGTCTGGGTTCATCTCCTTAAACGCTCTGCTTTTGGGAATCGCCATCGTGAGTGGAAGTGTCTTCAACAAGGTCCAGATCACTTCCTCTCACCTTTTGATCTTCCTCATCTTGCTGGTCATCCTGTCCACTGTGTGGATGCTTTACTATAAAGTGCACACTTCCCGGGTGTACCGCGCAGTGCTCTACAAGGACAGTCATGCCGGACCTGTTTGGCTGAGAACTGGACTGGTTTTGTTTGGGATCTGCAGTGTAATCATGGACATCTTCAAGATTATTTTTTACGTGGGTCGAATGAACTGCGAATCGCCTGTCAAAATAGCCTTCCCCGTTGTGCAAGCGGTGTTTGTCATCGTCCAGACATACGTGCTCTGGATTCATGCTAAAGACTGTGTGCAAATCAAGCAAAACATCACACGTTGCGGCCTGATGTTGACTCTGTCCACCAACCTCATGGTGTGGATGATGGCTGTGACTGAGGAGTCGCTCCACCAGACTGTGGCTCCAGTCAAACCTCCGACCAACAACAACAGCTACAACGACACACTTGATGGTCGTGCTGCAGCCAGTGAATGTGAGTGTCTCCATAACATGTGCGACCTCTTTGAGAAGGCCTACTACTACCTGTACCCCTTCAACATCGAGTACAGCCTCTTCGCCTCCGCCATGACCTACGTGATGTGGAAGAACGTCGGCCGCAAGATGGACGACCACCACAGCCACAAGCTGCACTTCAGCCTGTGGGACGTCCTGGTGGGTCCGCTGGCGGGCCTGATCGTCCTGGTGGCGGGTCTGGCTACGTTTGTGGTGTACGAAGTGGACGTGTCTAAAGACGACCCTAAGAAGAAGGAGGAGGCTCTGATAATGCACTACATCATGAACATAGTGGCCGTCCTGCTCATGTCCAGCTCCGCTCTCGCCGGATGCATCCTCTTCCGCATGGACAAGCGAGAGCAGGTGTCGGGGAAGAACCCAACGCGGAGTCTGGATGTGGGACTCCTGGTGGGAGCGTCATTGGGACAGTTCCTCATCTGCTACTTCACTATAGTCGCTGTTTTGGCGTCTGGCGTCCAAGGCCACACGAATGGGCTCAACCTAGCATGTGCTATGCTAACGGTGATCGAGCTGTGCATTCAGAATGCCTTCCTCATCAAGGGCCTCCATCGGGAGCCCTTTAAGGAGACTGAGGTGGCCACCGTCTTCGCCAACGTCATGGCTGTGAAGGAGCGAGACCCAGAGAGACGGAGCAGCTCCATCGTGCCCGCACACACACTCCCCATCCCGCTGACTCTACTGCAGGGCCGGATGTCCTGGAAGAGGAGGGTCCTGAAGGAGATCTGCGcctttctgttgctctgcaatgtCACGCTCTGGATAATTCCAGCCTTCGGAGCGCGGCCTCAGTTCGACAACACCGTTGGGCCAGACGTTTATGAGTTCCAAACGTGGGCCGCCGTGGTAAACATCGGAATGCCATTTGGGATCTTCTACCGAATGCACTCGGTGGCGAGTCTGTTTGAGGTGTGCCTCGCTGCCTAAAGCAGACCACCATCCCAGAACTGTACCACCCCAATGCACATAtctatgtaaaataatatatttttatagactATTTTTGTTTAgccaaatTGCTTTTGAGCTAATTTGGCTTGCCGTATGAGTGCGTGAGAGAGTGTAGATGTAGACCATGTTGAACTGAAATCtttctgaatgtgtgaatatcgATATCTACTGAATTATGGCCTAGCCCTGTTACAGGCGTTCAGCTGTTAGCAATGCAGCATAAAACCCTCCAGAAAAAAAGCGATGCTGTCAAAGATGTCTGTTTGTCGTGTCTGAAAAGTGCGAACACTGCTGTACCCTTTCTGTTGCTGATGGATAAATGAAACGTGGAATAATAA

Function

symbol description
otop2 Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OTOP2 (otopetrin 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050104-2 Predicted to enable proton channel activity. Predicted to be involved in proton transmembrane transport. Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human OTOP2 (otopetrin 2).

Ensembl:

ensembl_id ENSDARG00000006522

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050677 False 1665 mRNA 0.54 7 56905103 56915709
TCONS_00050678 True 2027 mRNA 0.52 7 56905103 56918442

Neighbor

gene id symbol gene type direction distance location
XLOC_025800 amn coding upstream 27185 56876280 ~ 56877918 (+)
XLOC_025799 NA coding upstream 82900 56821699 ~ 56822203 (+)
XLOC_025798 rnf213a coding upstream 91180 56699187 ~ 56813923 (+)
XLOC_025797 CR759836.1 coding upstream 219157 56645710 ~ 56685946 (+)
XLOC_025796 CU019632.1 coding upstream 282231 56619195 ~ 56622872 (+)
XLOC_025802 NA coding downstream 31513 56949955 ~ 56957558 (+)
XLOC_025803 bahcc1a coding downstream 119591 57038033 ~ 57174041 (+)
XLOC_025804 fscn2a coding downstream 315651 57234093 ~ 57257075 (+)
XLOC_025805 NA coding downstream 349921 57268363 ~ 57323496 (+)
XLOC_025806 NA coding downstream 507718 57426160 ~ 57480996 (+)
XLOC_025429 BX649540.1 misc upstream 26656067 30248739 ~ 30249036 (+)
XLOC_025793 NA non-coding upstream 544453 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 797194 56099256 ~ 56107909 (+)
XLOC_025790 NA non-coding upstream 1250839 55646873 ~ 55654264 (+)
XLOC_025807 NA non-coding downstream 515819 57434261 ~ 57436304 (+)
XLOC_025808 CT573423.1 non-coding downstream 717932 57636374 ~ 57641090 (+)
XLOC_025809 NA non-coding downstream 848182 57766624 ~ 57768666 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000112_03095649_03099316 OTOP2 coding CI01000112 null 3095122 ~ 3099316 (-)