LOC110530039


Basic Information

Item Value
gene id LOC110530039
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50990048 ~ 50995826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474475.2
ACAAATTGACGCATAGGGAGGTGTCAGGGGGGTGTTTCCCCAACCATTACTGGCTTTATCAGAACTGATCTGATTGCTCAAAATACTAATCAGTGaaggaaaaaaatatcagaattgggcttcctgtgtaaacgcagcctctGACAAGTAGCACAAGGAATCACATTGACTCTCTTCATAGTTTCCAAGTCGGACATTTCTGAGTTTCCAAGTTCCGAGACGTCTTTAACAAGGCAGAAGGATGAAAAAGTGTACaactggggtgtaatcattacgCCAATTCTATGGCAAAACGTTTGCAAAAGAAACCGTTTACTCCAAACGGTAAACATATTGAAAAGAAAACGAGAGTTTCtactggacaaattcagGCATTCGGCGACAAGGAGAACTCTGAGGGGGTGGTCAAAGTCCTGTCGTACGTGGAAGCGGTTTAGAAGGTCAAAAACACTACTGACGAGATAGAGGTCGCCCATCTGATAAAGGAGCACAGGCTGGAGCGGGAACAACTACTGACAGACCGACCACCTGAAGTCCAAAGAGGTATGGAAAACATTGTTAATGGAGATGCCCATGGCATCAGTGCTAAGAGTCATGGGTAAGATGACACCAGACCAAGTCCTCTAACCAGGAAGGTCAGATGTGGTAGCGGTTTGCGAGATGATCCAGAGTTTAAAAAAGGTTCTTGTGCGGATGGAGGCAGAGACACTCTGAGGGAGCTATAGTTCCTTGCACAATCTCAGCCGACATGTCTCTTCGTGAAGTAACAGCTAAGCTGGTCAAGATAACCAGTGGCTATACAGACTGCTCTCCCCATTCTGTGGGCTTCGGAGAAAGGGATCACTGTGAACATGTTCATCATATTCACCAACAGCGCCTGCTGGCACGGCCAACCCGGCGGAGTGTCTGAGGATGTACAGACATGTAAGTTGGATGCATCAAGGTAATCCTCAGAGAATGATTATGTGGTGTACCACTGTCTTACCCCCACTGCTCTGTCAATGCCAACCTGTGCTGCATTGATTGAAAAATAGACTTTTGGAAAACACTTGCACAGATACCATTTCACAtggaatatattttttaattacatGTGACTACGCTACTAACTACTCTTTAATCACAATTCAATCATGTTTGTGTCATGCACCTTATCTGTGTCATTATGTGCAGCTTGGTCAAGTACATTCTGGGGTCGTTCCTCCTCaaagcacaagaaagaggatttcGACACTCACCAAcgcagattgttctgaaattgtttctgtagttagaaacataAGAAAGCATTTCTACaacattttgttgaaatataatttgcaCTGAGAAATTATGCAAATTGATTTCACCCAAATTGGCAATTTCAAtgtaggattcatataatatacAATAAATATAGTATGCAACATCTGATTTCCACGAAAATAGCTTAGCAATTATTAAAATATGAGGAATCCAAATAAATTATAAAACGACACATACCCACCCCAATTGGTCAGTATATAGTATCAGTTCTCTCTGTTTGAAAAGTTGTATGAAGCTGTGACTTGGAGTATTGTTTATTCATGCTATGTAATCTAGTCAGAGtaaatcattattttattttttcctgTTTAGAGAGATCCTGCTACtgccattttatttttttaatgatggTGTCGTGTTTATCAAATGTATCACAACATTTTCTTTGGAACTTTGGGTAGAAAACCAATAGCTTTTGCTCATGATGAAAAGACGTTGTGGTCATCCACAAttcaagtgtcacgccctgaccatagagagcccttggttctctatggtgttgtaggtcagggcgtgaccaggggggtgttctagttttcctatttctatgttggtgtacttggtatggttcccaattagaggcagctgattatcattgtctctaattggggatcatacttaagttctCCATTGTTCCCACctgggttgtgggatattgtttgtgctTGTGCTAGTTGCAATGCTGAtgtcacgttttttttttttggtttatttgttttattttttgaaGTTTCACCGTAATAAAGATGTAGAACTCTACAcaacgctgtgccttggtccatcCATTATCAAGATCGTAACATCAAGCCAGTCCTCCATGAAAAAAGTTGAGTTTGTCCTTCtcttaggcttaatctgtgtccagaaaACCACCCCTGTGTGTTTGGTGAAGAAGCAAACTACTAGGCTACAGCAGTTCTATTGGTTTCAATGTTATGGTCTCTAAGGGTTTTCAATGGTAAAAgtcccaaacacacacagtaaaggcTTTTGTATTGGGTTAGGTTTAATGGTAAGTGTCACTAATCACACAACATACCATCACCAAATTTACTAAGAATTGGGGTTGTAACAGTTTGCGTTTCGGTACAGTGGGAAAATTAAATGTCATTCACAATGTTCCTGGCATTGTCTGTTGTGACAGGACTTTATGCTGGGACTCTTACATTTCCACTCTGATGCTGCGTTTTTGTAACCATGTGGGAGtttaccagttgtgaagtcgtaaatacAATTTGTGATGCATTAATCACTCTCAAACAATTACTCCGATCAGAATTGGATCAGGCAGCTGTGCTGACG
>XR_002474476.2
ACAAATTGACGCATAGGGAGGTGTCAGGGGGGTGTTTCCCCAACCATTACTGGCTTTATCAGAACTGATCTGATTGCTCAAAATACTAATCAGTGaaggaaaaaaatatcagaattgggcttcctgtgtaaacgcagcctctGACAAGTAGCACAAGGAATCACATTGACTCTCTTCATAGTTTCCAAGTCGGACATTTCTGAGTTTCCAAGTTCCGAGACGTCTTTAACAAGGCAGAAGGATGAAAAAGTGTACaactggggtgtaatcattacgCCAATTCTATGGCAAAACGTTTGCAAAAGAAACCGTTTACTCCAAACGGTAAACATATTGAAAAGAAAACGAGAGTTTCtactggacaaattcagGCATTCGGCGACAAGGAGAACTCTGAGGGGGTGGTCAAAGTCCTGTCGTACGTGGAAGCGGTTTAGAAGGTCAAAAACACTACTGACGAGATAGAGGTCGCCCATCTGATAAAGGAGCACAGGCTGGAGCGGGAACAACTACTGACAGACCGACCACCTGAAGTCCAAAGAGGTATGGAAAACATTGTTAATGGAGATGCCCATGGCATCAGTGCTAAGAGTCATGGGTAAGATGACACCAGACCAAGTCCTCTAACCAGGAAGGTCAGATGTGGTAGCGGTTTGCGAGATGATCCAGAGTTTAAAAAAGGTTCTTGTGCGGATGGAGGCAGAGACACTCTGAGGGAGCTATAGTTCCTTGCACAATCTCAGCCGACATGTCTCTTCGTGAAGTAACAGCTAAGCTGGTCAAGATAACCAGTGGCTATACAGACTGCTCTCCCCATTCTGTGGGCTTCGGAGAAAGGGATCACTGTGAACATGTTCATCATATTCACCAACAGCGCCTGCTGGCACGGCCAACCCGGCGGAGTGTCTGAGGATGTACAGACATCTTGGTCAAGTACATTCTGGGGTCGTTCCTCCTCaaagcacaagaaagaggatttcGACACTCACCAAcgcagattgttctgaaattgtttctgtagttagaaacataAGAAAGCATTTCTACaacattttgttgaaatataatttgcaCTGAGAAATTATGCAAATTGATTTCACCCAAATTGGCAATTTCAAtgtaggattcatataatatacAATAAATATAGTATGCAACATCTGATTTCCACGAAAATAGCTTAGCAATTATTAAAATATGAGGAATCCAAATAAATTATAAAACGACACATACCCACCCCAATTGGTCAGTATATAGTATCAGTTCTCTCTGTTTGAAAAGTTGTATGAAGCTGTGACTTGGAGTATTGTTTATTCATGCTATGTAATCTAGTCAGAGtaaatcattattttattttttcctgTTTAGAGAGATCCTGCTACtgccattttatttttttaatgatggTGTCGTGTTTATCAAATGTATCACAACATTTTCTTTGGAACTTTGGGTAGAAAACCAATAGCTTTTGCTCATGATGAAAAGACGTTGTGGTCATCCACAAttcaagtgtcacgccctgaccatagagagcccttggttctctatggtgttgtaggtcagggcgtgaccaggggggtgttctagttttcctatttctatgttggtgtacttggtatggttcccaattagaggcagctgattatcattgtctctaattggggatcatacttaagttctCCATTGTTCCCACctgggttgtgggatattgtttgtgctTGTGCTAGTTGCAATGCTGAtgtcacgttttttttttttggtttatttgttttattttttgaaGTTTCACCGTAATAAAGATGTAGAACTCTACAcaacgctgtgccttggtccatcCATTATCAAGATCGTAACATCAAGCCAGTCCTCCATGAAAAAAGTTGAGTTTGTCCTTCtcttaggcttaatctgtgtccagaaaACCACCCCTGTGTGTTTGGTGAAGAAGCAAACTACTAGGCTACAGCAGTTCTATTGGTTTCAATGTTATGGTCTCTAAGGGTTTTCAATGGTAAAAgtcccaaacacacacagtaaaggcTTTTGTATTGGGTTAGGTTTAATGGTAAGTGTCACTAATCACACAACATACCATCACCAAATTTACTAAGAATTGGGGTTGTAACAGTTTGCGTTTCGGTACAGTGGGAAAATTAAATGTCATTCACAATGTTCCTGGCATTGTCTGTTGTGACAGGACTTTATGCTGGGACTCTTACATTTCCACTCTGATGCTGCGTTTTTGTAACCATGTGGGAGtttaccagttgtgaagtcgtaaatacAATTTGTGATGCATTAATCACTCTCAAACAATTACTCCGATCAGAATTGGATCAGGCAGCTGTGCTGACG
>XR_005052894.1
ACAAATTGACGCATAGGGAGGTGTCAGGGGGGTGTTTCCCCAACCATTACTGGCTTTATCAGAACTGATCTGATTGCTCAAAATACTAATCAGTGaaggaaaaaaatatcagaattgggcttcctgtgtaaacgcagcctctGACAAGTAGCACAAGGAATCACATTGACTCTCTTCATAGTTTCCAAGTCGGACATTTCTGAGTTTCCAAGTTCCGAGACGTCTTTAACAAGGCAGAAGGATGAAAAAGTGTACaactggggtgtaatcattacgCCAATTCTATGGCAAAACGTTTGCAAAAGAAACCGTTTACTCCAAACGGTAAACATATTGAAAAGAAAACGAGAGTTTCtactggacaaattcagGCATTCGGCGACAAGGAGAACTCTGAGGGGGTGGTCAAAGTCCTGTCGTACGTGGAAGCGGTTTAGAAGGTCAAAAACACTACTGACGAGATAGAGGTCGCCCATCTGATAAAGGAGCACAGGCTGGAGCGGGAACAACTACTGACAGACCGACCACCTGAAGTCCAAAGAGGTATGGAAAACATTGTTAATGGAGATGCCCATGGCATCAGTGCTAAGAGTCATGGGTAAGATGACACCAGACCAAGTCCTCTAACCAGGAAGGTCAGATGTGGTAGCGGTTTGCGAGATGATCCAGAGTTTAAAAAAGTTGGTTGTGTCTGTTACAGGTTCTTGTGCGGATGGAGGCAGAGACACTCTGAGGGAGCTATAGTTCCTTGCACAATCTCAGCCGACATGTCTCTTCGTGAAGTAACAGCTAAGCTGGTCAAGATAACCAGTGGCTATACAGACTGCTCTCCCCATTCTGTGGGCTTCGGAGAAAGGGATCACTGTGAACATGTTCATCATATTCACCAACAGCGCCTGCTGGCACGGCCAACCCGGCGGAGTGTCTGAGGATGTACAGACATGTAAGTTGGATGCATCAAGGTAATCCTCAGAGAATGATTATGTGGTGTACCACTGTCTTACCCCCACTGCTCTGTCAATGCCAACCTGTGCTGCATTGATTGAAAAATAGACTTTTGGAAAACACTTGCACAGATACCATTTCACAtggaatatattttttaattacatGTGACTACGCTACTAACTACTCTTTAATCACAATTCAATCATGTTTGTGTCATGCACCTTATCTGTGTCATTATGTGCAGCTTGGTCAAGTACATTCTGGGGTCGTTCCTCCTCaaagcacaagaaagaggatttcGACACTCACCAAcgcagattgttctgaaattgtttctgtagttagaaacataAGAAAGCATTTCTACaacattttgttgaaatataatttgcaCTGAGAAATTATGCAAATTGATTTCACCCAAATTGGCAATTTCAAtgtaggattcatataatatacAATAAATATAGTATGCAACATCTGATTTCCACGAAAATAGCTTAGCAATTATTAAAATATGAGGAATCCAAATAAATTATAAAACGACACATACCCACCCCAATTGGTCAGTATATAGTATCAGTTCTCTCTGTTTGAAAAGTTGTATGAAGCTGTGACTTGGAGTATTGTTTATTCATGCTATGTAATCTAGTCAGAGtaaatcattattttattttttcctgTTTAGAGAGATCCTGCTACtgccattttatttttttaatgatggTGTCGTGTTTATCAAATGTATCACAACATTTTCTTTGGAACTTTGGGTAGAAAACCAATAGCTTTTGCTCATGATGAAAAGACGTTGTGGTCATCCACAAttcaagtgtcacgccctgaccatagagagcccttggttctctatggtgttgtaggtcagggcgtgaccaggggggtgttctagttttcctatttctatgttggtgtacttggtatggttcccaattagaggcagctgattatcattgtctctaattggggatcatacttaagttctCCATTGTTCCCACctgggttgtgggatattgtttgtgctTGTGCTAGTTGCAATGCTGAtgtcacgttttttttttttggtttatttgttttattttttgaaGTTTCACCGTAATAAAGATGTAGAACTCTACAcaacgctgtgccttggtccatcCATTATCAAGATCGTAACATCAAGCCAGTCCTCCATGAAAAAAGTTGAGTTTGTCCTTCtcttaggcttaatctgtgtccagaaaACCACCCCTGTGTGTTTGGTGAAGAAGCAAACTACTAGGCTACAGCAGTTCTATTGGTTTCAATGTTATGGTCTCTAAGGGTTTTCAATGGTAAAAgtcccaaacacacacagtaaaggcTTTTGTATTGGGTTAGGTTTAATGGTAAGTGTCACTAATCACACAACATACCATCACCAAATTTACTAAGAATTGGGGTTGTAACAGTTTGCGTTTCGGTACAGTGGGAAAATTAAATGTCATTCACAATGTTCCTGGCATTGTCTGTTGTGACAGGACTTTATGCTGGGACTCTTACATTTCCACTCTGATGCTGCGTTTTTGTAACCATGTGGGAGtttaccagttgtgaagtcgtaaatacAATTTGTGATGCATTAATCACTCTCAAACAATTACTCCGATCAGAATTGGATCAGGCAGCTGTGCTGACG

Function

NR:

description
PREDICTED: 60 kDa SS-A/Ro ribonucleoprotein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474475.2 False 2607 mRNA 0.41 5 50990048 50995826
XR_002474476.2 False 2358 mRNA 0.41 6 50990048 50995826
XR_005052894.1 True 2626 mRNA 0.41 5 50990048 50995826

Neighbor

gene id symbol gene type direction distance location
LOC110530038 LOC106568734 coding upstream 32597 50955408 ~ 50957451 (+)
LOC110530926 LOC106568801 coding upstream 45389 50943125 ~ 50944659 (+)
LOC110530037 LOC106568733 coding upstream 50459 50933532 ~ 50939589 (+)
mier1b LOC100380719 coding upstream 324424 50648718 ~ 50665624 (+)
LOC110530024 LOC106568723 coding upstream 348865 50607401 ~ 50641183 (+)
LOC110530041 cdc73 coding downstream 6141 51001967 ~ 51066824 (+)
LOC110530928 LOC106568738 coding downstream 218601 51214427 ~ 51239797 (+)
LOC110530044 LOC106568740 coding downstream 276420 51272246 ~ 51312687 (+)
ephb3a LOC106568743 coding downstream 423906 51419732 ~ 51465235 (+)
LOC110530050 LOC106568745 coding downstream 514300 51510126 ~ 51512502 (+)
G718368 NA non-coding upstream 18570 50969683 ~ 50971478 (+)
G718363 NA non-coding upstream 24401 50965448 ~ 50965647 (+)
G718357 NA non-coding upstream 29632 50960193 ~ 50960416 (+)
G718279 LOC106568732 non-coding upstream 141249 50847528 ~ 50848799 (+)
G718255 NA non-coding upstream 171200 50818507 ~ 50818848 (+)
G718395 NA non-coding downstream 13887 51009713 ~ 51051623 (+)
G718413 LOC106568735 non-coding downstream 35244 51031070 ~ 51034394 (+)
G718444 NA non-coding downstream 112754 51108580 ~ 51108793 (+)
G719353 NA non-coding downstream 233038 51228864 ~ 51229113 (+)
G719339 NA non-coding downstream 255036 51250862 ~ 51251868 (+)
LOC110530019 LOC106568718 other upstream 596212 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 1135856 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 1442963 49546212 ~ 49547085 (+)
G716862 NA other upstream 1656276 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 2381406 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 2674570 53670348 ~ 53674103 (+)
rps28 NA other downstream 2930391 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 3628348 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 4138204 55120291 ~ 55136638 (+)

Expression


Co-expression Network