Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530042 |
| gene name | kcnt2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 51127614 ~ 51189612 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| kcnt2 | Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2). |
| description |
|---|
| PREDICTED: potassium channel subfamily T member 2 isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021612813.2 | False | 5032 | mRNA | 0.48 | 28 | 51127614 | 51189612 |
| TU817607 | False | 480 | lncRNA | 0.37 | 2 | 51128392 | 51128917 |
| TU817608 | True | 328 | lncRNA | 0.47 | 3 | 51136329 | 51141203 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530040 | LOC106568735 | coding | downstream | 59813 | 51032565 ~ 51067801 (-) |
| LOC110530036 | LOC106568732 | coding | downstream | 278809 | 50834540 ~ 50848805 (-) |
| LOC110530035 | LOC106568731 | coding | downstream | 334020 | 50791220 ~ 50793594 (-) |
| LOC110530034 | LOC106568730 | coding | downstream | 359703 | 50740976 ~ 50767911 (-) |
| LOC110530033 | LOC106568728 | coding | downstream | 397680 | 50716128 ~ 50729934 (-) |
| LOC110530043 | LOC106568739 | coding | upstream | 62743 | 51252355 ~ 51259061 (-) |
| LOC110530045 | LOC106568741 | coding | upstream | 126682 | 51316294 ~ 51323600 (-) |
| LOC110530046 | LOC106568804 | coding | upstream | 188292 | 51377904 ~ 51380863 (-) |
| mfsd8l2 | LOC106568744 | coding | upstream | 306468 | 51496080 ~ 51516909 (-) |
| LOC110530051 | LOC106568746 | coding | upstream | 335655 | 51525267 ~ 51546934 (-) |
| G719276 | NA | non-coding | downstream | 3037 | 51124344 ~ 51124577 (-) |
| G719274 | NA | non-coding | downstream | 8128 | 51119235 ~ 51119486 (-) |
| G719263 | NA | non-coding | downstream | 20935 | 51106439 ~ 51106679 (-) |
| G719262 | NA | non-coding | downstream | 21753 | 51105647 ~ 51105861 (-) |
| G719255 | NA | non-coding | downstream | 31964 | 51095376 ~ 51095650 (-) |
| G719696 | LOC106613263 | non-coding | upstream | 34274 | 51223886 ~ 51224406 (-) |
| G719697 | NA | non-coding | upstream | 34917 | 51224529 ~ 51224765 (-) |
| G719701 | NA | non-coding | upstream | 38476 | 51228088 ~ 51228302 (-) |
| G719702 | NA | non-coding | upstream | 38789 | 51228401 ~ 51228671 (-) |
| G719761 | NA | non-coding | upstream | 122277 | 51311889 ~ 51312674 (-) |
| G719151 | NA | other | downstream | 188143 | 50936928 ~ 50939471 (-) |
| LOC110530011 | LOC106568709 | other | downstream | 1238362 | 49866272 ~ 49937001 (-) |
| G718489 | NA | other | downstream | 1289918 | 49785674 ~ 49837696 (-) |
| G716488 | NA | other | downstream | 2338652 | 48788521 ~ 48788962 (-) |
| G716480 | tnk2 | other | downstream | 2345099 | 48782121 ~ 48782515 (-) |
| G721275 | NA | other | upstream | 1571427 | 52761039 ~ 52761451 (-) |
| LOC110529122 | LOC106568971 | other | upstream | 2273570 | 53462034 ~ 53478913 (-) |
| G722459 | NA | other | upstream | 2308536 | 53495804 ~ 53499730 (-) |
| G722602 | NA | other | upstream | 2613831 | 53803443 ~ 53856065 (-) |
