XLOC_025802


Basic Information

Item Value
gene id XLOC_025802
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56949955 ~ 56957558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052810
CAAGTCACCAGTGACGCCATTACACAATCAGCCAATCCCTTGTCGCCCTCGTGTTTACGGCTCCATTTCCGCGCATGCGCTCTAACATGTAAATAACAGCAGACGCGGTGGTTTGTTTTGTGTCGCACAGCCTCATCAAACACGATAAACCGGCATATATTGACAGAGAGCCCCGCTATATCTCCTACGTTTAGGAGAAGACGACAAGAAGAAGAATCTAGCAGTACATTCGTATAAATAAATCGTGATTTTGAAGCTGTTTGAGTGTCAGTTAGCATACAGCTATGATAGAGACTAGCTGGAGGAGTTTGACACGTTTATGACGTAAATGCAGTTGATCAGACACGATCTTCGTTTAGTTTCTCACAACTCTTTAATAATTTAGTGATTGGTAATTTAGTGTTGAACAGGGATGAGAGTGTTTCGCGTGTTTATGTGTCGTTAGCAGAAGTGAGCTGAGAGGAAGGTTAGCATGACACAGCACTGAATCCAGGAGCGAATGTTGCTcagtaaaacacacaaacacacgggaGCTTCATCAGTATCTGCTGGGGGATCCGCAGACATGCTAACAGAGAACAGGAAGCGTCAGAGAGCAGAAGGAGATGATGAAGATGCTCAGATGCCACAAGCTAAAAGACTGAGTTCAGCCCTCCAGAGCTCCGAGACGGCCAGAGACTCATGGGAGTCTGAGTCCTCCAGCAGCGAGAGCAGTTGGATCAGCAGTCCCGATCATGCCGCAGGGAGCACTCATTGCGGAGGCGACGTTATCGGGCCTCCCGGCGGCCCCGGCCCCTGCAGTCCTCACAGTGCCTCCAAGCCATCGGGCCCCATGGACCTGCTGTCCTACCAGCACATCAACCGAGTCCTGAGAGAAGCTCATTTCCACAGCTTACAGAGCCGATCTCAGGCCAAGCACAGGTGATTTCAGGGAGCGCCTGAAGCCCACAGCAACCCCTAAACACAGGGTAAAACCTCTCCATCTGCATCTCCATACAGACCCGCTCCTCCTATCTTTCTCACGTTGATTCTTCATCAGATGGAAAACATGCCCTGGTACTGTACTCTCGACTAACTAGAGCACAAAAGTGTTTGTTGTAAGCAATAACGGCTTGACTACGATGCAAACTTTTGTGACTTTAACACTGTGTATTTTACTCTTGAGAATAGCTGTACAGTTTAGTGGGGATTTGCACTTGGGGGTGTGTTATAATGTCAATCAGATCTCGATGTGGACCATATAGCAGTTTAGATGAGAACAGAATATTCCAGTAGTCCATTGCTGTAATGAATGCACACAGAAGCCAgttgatatacacacacacacacacacacacaccatctgaAGACTGTAGTGTTTTCAGTTTATCCCTCTCTCTTTTCGACCATAGCTAAAGCTGGTTGCTCCTTTATGGCTTCAGGCCGAGCTTTTCTTGTGCGCTCTTCAAACTCAGATAGCATTTTAaagattgttgtttattttactatACCCTTTTTGTATTGAAAGATGTACattgcattttacattcagaTCATCTACATTTCTAAATAAAGATGGATGTTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052810 True 1566 lncRNA 0.46 3 56949955 56957558

Neighbor

gene id symbol gene type direction distance location
XLOC_025801 otop2 coding upstream 31513 56905103 ~ 56918442 (+)
XLOC_025800 amn coding upstream 72037 56876280 ~ 56877918 (+)
XLOC_025799 NA coding upstream 127752 56821699 ~ 56822203 (+)
XLOC_025798 rnf213a coding upstream 136032 56699187 ~ 56813923 (+)
XLOC_025797 CR759836.1 coding upstream 264009 56645710 ~ 56685946 (+)
XLOC_025803 bahcc1a coding downstream 80475 57038033 ~ 57174041 (+)
XLOC_025804 fscn2a coding downstream 276535 57234093 ~ 57257075 (+)
XLOC_025805 NA coding downstream 310805 57268363 ~ 57323496 (+)
XLOC_025806 NA coding downstream 468602 57426160 ~ 57480996 (+)
XLOC_025807 NA coding downstream 476703 57434261 ~ 57436304 (+)
XLOC_025429 BX649540.1 misc upstream 26700919 30248739 ~ 30249036 (+)
XLOC_025796 CU019632.1 non-coding upstream 327083 56619195 ~ 56622872 (+)
XLOC_025793 NA non-coding upstream 589305 56358682 ~ 56360650 (+)
XLOC_025791 FP326652.1 non-coding upstream 842046 56099256 ~ 56107909 (+)
XLOC_025790 NA non-coding upstream 1295691 55646873 ~ 55654264 (+)
XLOC_025808 CT573423.1 non-coding downstream 678816 57636374 ~ 57641090 (+)
XLOC_025809 NA non-coding downstream 809066 57766624 ~ 57768666 (+)
XLOC_025814 NA non-coding downstream 1023700 57981258 ~ 57986847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location