LOC110530046 (LOC106568804)


Basic Information

Item Value
gene id LOC110530046
gene name LOC106568804
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51377904 ~ 51380863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612824.2
ATGGCTCAGTATAACTGTTCCTCTCTGGGTCTACCTGCCACCACTCCTGACCAGCTGGGTTGGAATTTGTCCTGGGCCCTGGGCAACATCAGTGCTGATGACATGGAGGACATGTGCCTGAGTCGGAGTCAGTACCTGGAGAAGTTTCTAGGCTTCCGGCGGTCACCCATGTTCCTGCCTGTCTGCATTACCTTCCTCATCATCTTCATTGTGGGATTGTTTGGGAACATGCTCACCTGCAGCGTCATCGTGCGCAACAAGGTGATGCGGACGCCAACCAACTACTACCTGTTCAGTCTGGCCGTGTCCGACTTATTGGTCCTAGTCCTGGGTATGCCATTGGAACTCTATGAGATGTGGAGCAACTACCCATTCCTGTTCGGTTCTGGCGGCTGCTACTTCAAGACCTTCCTGTTCGAGACTGTCTGCTTTGCGTCCATCCTCATTATAACAGTGCTGAGCGTGGAGCGATACATCGCCGTGATACACCCGCTCAAGGTCAAGCACGTCGCCACTCGTGCCCACGCCAAGCACGTCATCCTGATGCTGTGGGCCATGTCCATGGCGTGCGCCGTGCCCAACACCAGCCTCCATGGGGTGGCCGTGCTAGGAACCCGGTTCGGGCGCCAATTCCCAGAGTCGACCATTTGCATGATGGTGAAGCCCCGGTGGATATACAACCTGATTATCCAGGTGACCACGCTGGTCTTCTTCCTGCTGCCCATGCTCATCATCACCGGGCTGTACCTTCGCATTGGCCTGCAGTTGAGGATGGAGAGGGGCATGCAGGGGCTGGGGACCGGGCCGAGTTTTGGTTCTGACAGACACTGGAGTGTCCACAGGCAGCAGCAGACGGCACGCCACCGACAGGTCACCAAAATGCTATGCGTACTGGTGATCGTCTTCGGCATCTGCTGGGCTCCCTTCCACATTGACCGCCTCATGTGGAGCTTCATAAACTCCTGGACTGGCCACCACCACCTGGTCTTTGAGTACGTCCACATAGTCTCCGGGGTCTTCTTCTACCTCAGCTCGGTGGTCAACCCCATCCTCTACAGCCTCATGTCCACCCGCTTCCGGGAGATGTTCCGGCAGGTCACGTGTCGCTACGGCCCATGTGGGGGTCACGTGCGCAGGCTGACCTCCGGCTGCACCCAACTGACCCTGCGTAGTACTGCCGCAACACAATGGGACCCCAGAGAGGATCACCCCAGACAGAGAGGAGCGCCACGTGTACGTAGACTCCAACCACCAGCCTGTATATGCCAACACAAGCCCGGATTAGATATGGGTGAGGGGGTGGGGGTACCAAAACGAGGCTCAAAAAAAGAACCAGGATTTGGTACCAAAATGACCGTATTTGTGACTGAATGAACGTGTACGGTGAAAGTTTGGATGGAGCGAAAGCAACTGCGTTGACGTTTTGGCCTCGACTTTGGTGTAGAATTCTCACCGGGGATACCAACATGAAACAAGATTAATAACAAATGTATCACTGATTGAATGTGTACAGTGAGAGTGGCTAGAGCGAAAGTTGTCCTTGTTCTTCGTTCGGATATTAATATTCCGGTGGAACACATCATTCATAAAGCTTATCTAATAATTGAACTGTGAAAAAGAAACAGTACCCAGCTTTGTAAATTCGCTTATTGATGTGTAATCCGTGAAGCTTGAATATCTTATTCTGTTCAAATGTTTCAGGAGGCACAATTATAGGTTGTAGCGGTCTTCTTAACTGTCTTCTTCAATGTGTTGTTGTACCGTTTCGGTGTACTAGCTATACCATCAAAATCCCACTCACTATGAATGTATAGCACAGACAATATGGAAGTACAGTACATGGGAGATGGAAAAGACGAAAATGTGACATGCGATTTACGCATAACATCCTTAAAGAAATGGAAAAAGGGGGGGAATTTCCATCGACAGTAAGTGAACACATGTGCTAAACACATGCTATGTGCCTTTGTAGTACTACTCCAAAATGTATAGTATTTAGCTTCAAGTGCTTTCTGGAAACTGCCATCTTTTGTTCCTGTGTAAACTGATTTAGAATTCAACATTTTTACAACGACAACAGTTTCCAGCATCACCTACATTTTCATTGCTAAACAACATGTATCATATTTAGGAATTATTTGCATGCTCCCATTGAGTCTCAAATGTTTTGGAATGGTCTTCAGTATAAAGAGACATGGTTGAGATACCTGTCATGTTGTCATGTGGTTTTAGTAAGGGCTTGATTGTTTACAGAATAATAATTACATTGCTTTTAAGAAGCCTATTGTAAAGCATGCACATTAAACAGTGCTTTAGGTGTCACTACAggcaccctggttcgaatccaggctgtatcacaaccggctgtgattgggag
>TU817790
GGGCCGAGTTTTGGTTCTGACAGACACTGGAGTGTCCACAGGCAGCAGCAGACGGCACGCCACCGACAGGTCACCAAAATGCTATGCGTACTGGTGATCGTCTTCGGCATCTGCTGGGCTCCCTTCCACATTGACCGCCTCATGTGGAGCTTCATAAACTCCTGGACTGGCCACCACCACCTGGTCTTTGAGTACGTCCACATAGTCTCCGGGGTCTTCTTCTACCTCAGCTCGGTGGTCAACCCCATCCTCTACAGCCTC

Function

NR:

description
neuromedin-U receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612824.2 False 2377 mRNA 0.49 2 51377904 51380863
TU817790 True 261 lncRNA 0.57 2 51379219 51380062
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110530045 LOC106568741 coding downstream 54304 51316294 ~ 51323600 (-)
LOC110530043 LOC106568739 coding downstream 118843 51252355 ~ 51259061 (-)
LOC110530042 kcnt2 coding downstream 188292 51127614 ~ 51189612 (-)
LOC110530040 LOC106568735 coding downstream 310103 51032565 ~ 51067801 (-)
LOC110530036 LOC106568732 coding downstream 529099 50834540 ~ 50848805 (-)
mfsd8l2 LOC106568744 coding upstream 115217 51496080 ~ 51516909 (-)
LOC110530051 LOC106568746 coding upstream 144404 51525267 ~ 51546934 (-)
LOC110530052 LOC106568747 coding upstream 179937 51560800 ~ 51582355 (-)
LOC110530053 LOC106568748 coding upstream 202662 51583525 ~ 51591883 (-)
si:dkey-18p12.4 LOC106568750 coding upstream 267675 51648538 ~ 51689345 (-)
G719767 NA non-coding downstream 49472 51328206 ~ 51328432 (-)
G719762 NA non-coding downstream 64367 51313308 ~ 51313537 (-)
G719761 NA non-coding downstream 65230 51311889 ~ 51312674 (-)
G719702 NA non-coding downstream 149233 51228401 ~ 51228671 (-)
G719701 NA non-coding downstream 149602 51228088 ~ 51228302 (-)
G719835 LOC106568743 non-coding upstream 58091 51438954 ~ 51439395 (-)
G719841 LOC106568743 non-coding upstream 64357 51445220 ~ 51445520 (-)
G719842 NA non-coding upstream 65876 51446739 ~ 51446984 (-)
G719854 NA non-coding upstream 85113 51465976 ~ 51466228 (-)
G719886 LOC106568745 non-coding upstream 130424 51511287 ~ 51575248 (-)
G719151 NA other downstream 438433 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 1488652 49866272 ~ 49937001 (-)
G718489 NA other downstream 1540208 49785674 ~ 49837696 (-)
G716488 NA other downstream 2588942 48788521 ~ 48788962 (-)
G721275 NA other upstream 1380176 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2082319 53462034 ~ 53478913 (-)
G722459 NA other upstream 2117285 53495804 ~ 53499730 (-)
G722602 NA other upstream 2422580 53803443 ~ 53856065 (-)
G722670 NA other upstream 2545365 53926228 ~ 53927959 (-)

Expression

LOC110530046(LOC106568804) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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LOC110530046(LOC106568804) Expression in each Bioproject

Bar chart with 12 bars.
LOC110530046(LOC106568804) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network